Factsheet for Bra007814.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY56279	Canola	cytosol	98.31	99.93
CDX76767	Canola	cytosol, nucleus, plastid	96.19	95.42
AT2G25170.3	Thale cress	endoplasmic reticulum	90.33	87.45
Solyc08g029120.1.1	Tomato	nucleus	38.31	74.08
KRH05279	Soybean	nucleus	22.78	68.65
Bra011311.1-P	Field mustard	nucleus	58.02	65.24
VIT_04s0008g05880.t01	Wine grape	nucleus	69.82	64.74
KRH52357	Soybean	nucleus	67.77	64.24
KRH61691	Soybean	nucleus	67.77	64.15
Solyc06g065730.2.1	Tomato	nucleus	63.66	60.47
GSMUA_Achr4P21270_001	Banana	cytosol	58.97	58.38
KXG19483	Sorghum	cytosol	55.16	56.87
Zm00001d045109_P008	Maize	cytosol	54.51	55.77
TraesCS7B01G050100.3	Wheat	nucleus	54.95	55.35
TraesCS7A01G147100.2	Wheat	nucleus	54.87	55.11
TraesCS7D01G148900.4	Wheat	nucleus	54.29	52.74
Bra012099.1-P	Field mustard	cytosol	16.12	28.53
Bra040221.1-P	Field mustard	nucleus	20.81	27.07
Bra020751.1-P	Field mustard	nucleus	20.51	26.59
Bra002173.1-P	Field mustard	nucleus	20.59	26.41
Bra017422.1-P	Field mustard	cytosol	14.14	25.33
Bra023689.1-P	Field mustard	nucleus	20.15	24.98
Bra040237.1-P	Field mustard	nucleus	18.1	22.45
Bra004881.1-P	Field mustard	nucleus	10.55	22.26
Bra037208.1-P	Field mustard	nucleus	24.84	20.11
Bra037150.1-P	Field mustard	nucleus	16.48	18.77
Bra027574.1-P	Field mustard	nucleus	26.01	15.98
Bra014632.1-P	Field mustard	cytosol	17.07	15.39
Bra007318.1-P	Field mustard	nucleus	15.6	14.24
Bra034727.1-P	Field mustard	nucleus	20.15	13.62
Bra000409.1-P	Field mustard	plastid	18.46	11.66
Bra039296.1-P	Field mustard	plastid	18.02	11.51
Bra000114.1-P	Field mustard	nucleus	19.34	8.06

Protein Annotations

Gene3D:1.10.10.60	MapMan:12.4.1.1.5	Gene3D:2.40.50.40	Gene3D:3.30.40.10	Gene3D:3.40.50.10810	Gene3D:3.40.50.300
EnsemblPlantsGene:Bra007814	EnsemblPlants:Bra007814.1	EnsemblPlants:Bra007814.1-P	InterPro:Chromo-like_dom_sf	InterPro:Chromo/chromo_shadow_dom	InterPro:Chromo_domain
ncoils:Coil	InterPro:DUF1086	InterPro:DUF1087	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046872
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR000953	InterPro:IPR001650	InterPro:IPR013083	InterPro:IPR014001
InterPro:IPR019787	InterPro:IPR038718	UniProt:M4CUC0	InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271
PFAM:PF00385	PFAM:PF00628	PFAM:PF06461	PFAM:PF06465	ScanProsite:PS01359	PFscan:PS50013
PFscan:PS50016	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR10799	PANTHER:PTHR10799:SF853	SMART:SM00249
SMART:SM00298	SMART:SM00487	SMART:SM00490	SMART:SM01146	SMART:SM01147	InterPro:SNF2-like_sf
InterPro:SNF2_N	SUPFAM:SSF52540	SUPFAM:SSF54160	UniParc:UPI0002542D00	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_PHD
InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

AT2G25170 (E=0.0) PKL, GYM, CHD3, CHR6, SSL2 | PKL (PICKLE); ATPase/ DNA binding / DNA helicase

Coordinates

chrA09:-:31014044..31021658

Molecular Weight (calculated)

156127.0 Da

IEP (calculated)

5.261

GRAVY (calculated)

-0.638

Length

1365 amino acids

Sequence
(BLAST)

0001: MSSLVERLRL RSDRKPVYNL DESDDEDYAP KKDRTFEQVE AIVRTDAKEN ACQACGESAN LVSCNTCTYA YHAKCLIPPL KDASVENWRC PECVSPLSEM
0101: DKILDCEMRP TISDEQDSSD AAPKPVSVKQ YLVKWKGLSY LHCSWVPEKE FVKAYKTNHR LKTRVNNFHR QKLESSNNNE DDFVAIRPEW TTVDRILAYR
0201: EEDGEEQYLV KYKELSYDEC YWESESDIST FQNEIQRFKD INSRTRRGNK DVDHRRNPKD FQQFDHSPEF LKGLLHPYQL EGLNFLRFSW SKQTHVILAD
0301: EMGLGKTIQS IALLASLFEE NLIPHLVIAP LSTLRNWERE FATWAPQMNV VMYFGTSQAR AVIREHEFYF PKGQQKMKKK KSGQSSSENK QKRIKFDVLL
0401: TSYEMINLDT AVLKPIKWEC MIVDEGHRLK NKDSKLFSSL TQYSSNHRIL LTGTPLQNNL DELFMLMHFL DAGKFGSLEE FQEEFKDINQ EEQISRLHRM
0501: LAPHLLRRVK KDVMKDMPPK KELILRVDLS SEQKEYYKAI LSRNYQVLTK KGGAQISLNN IMMELRKVCC HPYMLEGVEP VIHDANEAFK KLVESCGKLQ
0601: LLDKMMVKLK EQGHRVLIYT QFQHMLDLLE DYCSYKEWSY ERIDGKVGGA ERQIRIDRFN AVNSSRFCFL LSTRAGGLGI NLATADTVII YDSDWNPHAD
0701: LQAMARAHRL GQRNKVMIYR LINRGTIEER MMQLTKKKMV LEHLVVGKLK TQNINQEELD DIIRYGSKEL FASEDDEAGK SGKIHYDDAA IDKLLDRDIV
0801: DAEEVAVDDE EENGFLKAFK VANFEYIDEN EAAALEAQRV AAEKKSSAGE RATYWEELLK DKFEVQQAEE LNALGKRKRS RKQLVSVEED DLAGLEDVSS
0901: DGDESYEADS TDGETPGQGN QTGRRPYRRK GRDNSEPTPL MEGEGRSFRV LGFNQSQRAI FVQTLMRFGV GNYDWKEFVP RLKQKTYDEI KEYGVLFLKH
1001: IAEDIDENSS TFSDGVPKEG LRIEDVLVRI AVLMLVQEKV KLVEDHPGKP VFPNRILERF PGLRSGKVWK EEHDKIMIRA VLKHGYGRWQ AIVDDKGLGI
1101: QELICKELNF PHISLSAAEQ AGLQGQNGSG SSNLGAQNHG GGVTGNSNAS PADAGQVNSM FYYRDMQRRL VEFVKKRVLL LEKALNYEYA EDYYGLGGSS
1201: SVPSEEPEAE PKVTDTVGAS FIEVDDEMLQ ALPKTEPITS EEIMVAAADN NQERVEIAQL YNKMCKDLDE NARESVQAYV NNQPSNGKLG ESFRSIESNI
1301: SRILSAPSDQ LKSTEDTKPN LNNVEMDSVE ETKPLRASVD LNVLEGEENI GEGSGSVDVK MEEAK

Best Arabidopsis Sequence Match ( AT2G25170.4 )
(BLAST)

0001: MSSLVERLRI RSDRKPVYNL DDSDDDDFVP KKDRTFEQVE AIVRTDAKEN ACQACGESTN LVSCNTCTYA FHAKCLVPPL KDASVENWRC PECVSPLNEI
0101: DKILDCEMRP TKSSEQGSSD AEPKPIFVKQ YLVKWKGLSY LHCSWVPEKE FQKAYKSNHR LKTRVNNFHR QMESFNNSED DFVAIRPEWT TVDRILACRE
0201: EDGELEYLVK YKELSYDECY WESESDISTF QNEIQRFKDV NSRTRRSKDV DHKRNPRDFQ QFDHTPEFLK GLLHPYQLEG LNFLRFSWSK QTHVILADEM
0301: GLGKTIQSIA LLASLFEENL IPHLVIAPLS TLRNWEREFA TWAPQMNVVM YFGTAQARAV IREHEFYLSK DQKKIKKKKS GQISSESKQK RIKFDVLLTS
0401: YEMINLDSAV LKPIKWECMI VDEGHRLKNK DSKLFSSLTQ YSSNHRILLT GTPLQNNLDE LFMLMHFLDA GKFGSLEEFQ EEFKDINQEE QISRLHKMLA
0501: PHLLRRVKKD VMKDMPPKKE LILRVDLSSL QKEYYKAIFT RNYQVLTKKG GAQISLNNIM MELRKVCCHP YMLEGVEPVI HDANEAFKQL LESCGKLQLL
0601: DKMMVKLKEQ GHRVLIYTQF QHMLDLLEDY CTHKKWQYER IDGKVGGAER QIRIDRFNAK NSNKFCFLLS TRAGGLGINL ATADTVIIYD SDWNPHADLQ
0701: AMARAHRLGQ TNKVMIYRLI NRGTIEERMM QLTKKKMVLE HLVVGKLKTQ NINQEELDDI IRYGSKELFA SEDDEAGKSG KIHYDDAAID KLLDRDLVEA
0801: EEVSVDDEEE NGFLKAFKVA NFEYIDENEA AALEAQRVAA ESKSSAGNSD RASYWEELLK DKFELHQAEE LNALGKRKRS RKQLVSIEED DLAGLEDVSS
0901: DGDESYEAES TDGEAAGQGV QTGRRPYRRK GRDNLEPTPL MEGEGRSFRV LGFNQSQRAI FVQTLMRYGA GNFDWKEFVP RLKQKTFEEI NEYGILFLKH
1001: IAEEIDENSP TFSDGVPKEG LRIEDVLVRI ALLILVQEKV KFVEDHPGKP VFPSRILERF PGLRSGKIWK EEHDKIMIRA VLKHGYGRWQ AIVDDKELGI
1101: QELICKELNF PHISLSAAEQ AGLQGQNGSG GSNPGAQTNQ NPGSVITGNN NASADGAQVN SMFYYRDMQR RLVEFVKKRV LLLEKAMNYE YAEEYYGLGG
1201: SSSIPTEEPE AEPKIADTVG VSFIEVDDEM LDGLPKTDPI TSEEIMGAAV DNNQARVEIA QHYNQMCKLL DENARESVQA YVNNQPPSTK VNESFRALKS
1301: INGNINTILS ITSDQSKSHE DDTKPDLNNV EMKDTAEETK PLRGGVVDLN VVEGEENIAE ASGSVDVKME EAKEEEKPKN MVVD

Arabidopsis Description

PKLchromatin remodeling factor CHD3 (PICKLE) [Source:TAIR;Acc:AT2G25170]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.