Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G050100.3 | Wheat | nucleus | 91.89 | 95.28 |
| TraesCS7A01G147100.2 | Wheat | nucleus | 91.81 | 94.92 |
| KXG19483 | Sorghum | cytosol | 72.95 | 77.42 |
| Zm00001d045109_P008 | Maize | cytosol | 72.38 | 76.24 |
| Solyc08g029120.1.1 | Tomato | nucleus | 32.1 | 63.88 |
| GSMUA_Achr4P21270_001 | Banana | cytosol | 56.73 | 57.8 |
| KRH05279 | Soybean | nucleus | 18.51 | 57.4 |
| CDY56279 | Canola | cytosol | 52.6 | 55.03 |
| Bra007814.1-P | Field mustard | nucleus | 52.74 | 54.29 |
| VIT_04s0008g05880.t01 | Wine grape | nucleus | 55.94 | 53.4 |
| CDX76767 | Canola | cytosol, nucleus, plastid | 52.03 | 53.12 |
| KRH61691 | Soybean | nucleus | 54.31 | 52.91 |
| AT2G25170.3 | Thale cress | endoplasmic reticulum | 52.88 | 52.7 |
| KRH52357 | Soybean | nucleus | 53.59 | 52.29 |
| CDX75208 | Canola | cytosol | 43.77 | 51.42 |
| Solyc06g065730.2.1 | Tomato | nucleus | 52.03 | 50.87 |
| CDX68802 | Canola | cytosol | 43.91 | 50.82 |
| Bra011311.1-P | Field mustard | nucleus | 43.84 | 50.74 |
| AT4G31900.1 | Thale cress | nucleus | 40.78 | 47.67 |
| TraesCS7D01G069700.1 | Wheat | cytosol | 15.44 | 27.86 |
| TraesCS2D01G365000.1 | Wheat | cytosol | 15.52 | 26.55 |
| TraesCS4D01G053600.2 | Wheat | cytosol | 15.52 | 26.11 |
| TraesCS1D01G099600.1 | Wheat | nucleus | 19.86 | 25.2 |
| TraesCS3D01G068900.1 | Wheat | nucleus | 19.79 | 24.8 |
| TraesCS4D01G364600.1 | Wheat | cytosol, mitochondrion | 15.23 | 24.26 |
| TraesCS1D01G089200.2 | Wheat | nucleus | 18.08 | 22.34 |
| TraesCS3D01G403600.1 | Wheat | nucleus | 19.36 | 22.15 |
| TraesCS2D01G400400.1 | Wheat | cytosol | 13.1 | 20.93 |
| TraesCS2D01G130900.1 | Wheat | nucleus | 23.13 | 18.81 |
| TraesCS2D01G234200.1 | Wheat | nucleus | 25.48 | 15.93 |
| TraesCS4D01G159900.1 | Wheat | nucleus | 16.44 | 15.46 |
| TraesCS7D01G531100.1 | Wheat | nucleus | 18.79 | 12.16 |
| TraesCS6D01G039800.1 | Wheat | nucleus, plastid | 17.22 | 10.94 |
| TraesCS7D01G206700.2 | Wheat | nucleus | 18.43 | 7.69 |
Protein Annotations
| MapMan:12.4.1.1.5 | Gene3D:2.40.50.40 | Gene3D:3.30.40.10 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | InterPro:Chromo-like_dom_sf |
| InterPro:Chromo/chromo_shadow_dom | InterPro:Chromo_domain | ncoils:Coil | InterPro:DUF1086 | InterPro:DUF1087 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR000953 |
| InterPro:IPR001650 | InterPro:IPR013083 | InterPro:IPR014001 | InterPro:IPR019787 | InterPro:IPR038718 | InterPro:P-loop_NTPase |
| PFAM:PF00176 | PFAM:PF00271 | PFAM:PF00385 | PFAM:PF06461 | PFAM:PF06465 | ScanProsite:PS01359 |
| PFscan:PS50013 | PFscan:PS50016 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR10799 | PANTHER:PTHR10799:SF853 |
| SMART:SM00249 | SMART:SM00298 | SMART:SM00487 | SMART:SM00490 | SMART:SM01146 | SMART:SM01147 |
| InterPro:SNF2-like_sf | InterPro:SNF2_N | SUPFAM:SSF52540 | SUPFAM:SSF54160 | EnsemblPlantsGene:TraesCS7D01G148900 | EnsemblPlants:TraesCS7D01G148900.4 |
| InterPro:Zinc_finger_PHD-type_CS | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD | TIGR:cd00024 | TIGR:cd00046 |
| TIGR:cd00079 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr7D:-:96756606..96777587
Molecular Weight (calculated)
160660.0 Da
IEP (calculated)
6.216
GRAVY (calculated)
-0.674
Length
1405 amino acids
Sequence
(BLAST)
(BLAST)
0001: MERLRTRSDR KLRDTLGESD KDLTPDGVRH VMDQYKLTMA TWTTCGPCPQ LSPSTKVMTR SQLKKSMNEC MDHEAPAKRV VHRDAPCPQT PLPTKSNTSP
0101: MRKMMTRSMS ERPRAWVPDL IADHKKEDAC RKCGLSDNLV SCTTCTYAFH RKCLVPCLNI TSDKWSCPEC VSPLTEMEKI LDCETKVASE ETSSSESGSN
0201: KKPVKQYLIK WKGLSHIHCT WVSEDEYFEA AKIHPRLKTR LNNFNRQFES TDKSDDDYVP IRPEWTTVDR VLASRKNSSG EREYYVKWKE LSYDECTWES
0301: ESDISVFQPQ IERYNEILSK RKKSTDKSKN ADRAMRHAEG TPEFLTGGTL HPYQLEGLNF LRYSWSINKR VILGDEMGLG KTIQSIAFLA SVSEDKFGPH
0401: LVVAPLSTLR NWEREFATWA PQMNVIMYFG SGSSRDIIKK YEFYYSKDNP KKLKKNKSSS SNDEKKQSRI KFDVLLTSYE MINMDSAVLK TIEWECMIVD
0501: EGHRLKNKDS KLFGLLKDYH TQHRVLLTGT PVQNNLDELF MLMHFLEGET FGSISDLQEE FKDINQDKQV EKLHGMLKPH LLRRFKKDVM KELPPKKELI
0601: LRVELTSKQK EYYKAILTKN YAVLSRRGGG HVSLINVVME LRKLCCHGFM TDEPDTEPAS PEEGLRRLLD SSGKMQLLDK MMVKLKEQGH RVLIYSQFQH
0701: MLDLLEDYLS YRKWSYERID GKIGGAERQI RIDRFNAKTS TRFCFLLSTR AGGLGINLAT ADTVIIYDSD WNPHADLQAM ARAHRLGQTS KVMIYRLVSR
0801: GTIEERMMQL TKKKMILEHL VVGRLTKASN VNQEELDDII RYGSKELFDD DEDEAGKSRQ IHYDDAAIDR LLDRDQVDEE EYLEDEEDDE FLKGFKVANF
0901: EYIDEAKALA AKEEARKKAE AEAASNKANY WEELLKDRCV EQEVEEIAMG KGKRSRKQMA AADEDDITGL HELSSEDEDY SYDDDVSDND TSLPANVSGR
1001: KAQYSKKNSR NVDSLPLMEG EGRALKVYGF NHVQRTQFLQ TLMRYGFQNY DWKEYLPRLK GKSVEEIQRY GELVMAHLVE DTNDSPTYAD GVPKEMRADE
1101: TLVRLAKISL VEEKVAAMEQ GKITKLFPNY LLHEFTGLSG GRIWKGEHDL LLLKALIKHG YARWQYISDD RDNGLFETAR RELNLPSANE LISSQSNNEA
1201: NGNLENTQEV QVNPTSLSQY RDIQRKIVEF IRKRYHILEK CLDIEYAVIK TNTPVPDDLT EQNVPMGHSP AVPDISEVLR ELPPLVPISA KEVASDGSTD
1301: QAHLSHLYNK MCGVLEDSGP RALNSFCGDK AASASLANSL HQFEKVCEDV DRVLRVQENG AATPKEQVVD ASVEEAKPPQ DAGVVAANGV GPSTVKPEDK
1401: MEIDG
0101: MRKMMTRSMS ERPRAWVPDL IADHKKEDAC RKCGLSDNLV SCTTCTYAFH RKCLVPCLNI TSDKWSCPEC VSPLTEMEKI LDCETKVASE ETSSSESGSN
0201: KKPVKQYLIK WKGLSHIHCT WVSEDEYFEA AKIHPRLKTR LNNFNRQFES TDKSDDDYVP IRPEWTTVDR VLASRKNSSG EREYYVKWKE LSYDECTWES
0301: ESDISVFQPQ IERYNEILSK RKKSTDKSKN ADRAMRHAEG TPEFLTGGTL HPYQLEGLNF LRYSWSINKR VILGDEMGLG KTIQSIAFLA SVSEDKFGPH
0401: LVVAPLSTLR NWEREFATWA PQMNVIMYFG SGSSRDIIKK YEFYYSKDNP KKLKKNKSSS SNDEKKQSRI KFDVLLTSYE MINMDSAVLK TIEWECMIVD
0501: EGHRLKNKDS KLFGLLKDYH TQHRVLLTGT PVQNNLDELF MLMHFLEGET FGSISDLQEE FKDINQDKQV EKLHGMLKPH LLRRFKKDVM KELPPKKELI
0601: LRVELTSKQK EYYKAILTKN YAVLSRRGGG HVSLINVVME LRKLCCHGFM TDEPDTEPAS PEEGLRRLLD SSGKMQLLDK MMVKLKEQGH RVLIYSQFQH
0701: MLDLLEDYLS YRKWSYERID GKIGGAERQI RIDRFNAKTS TRFCFLLSTR AGGLGINLAT ADTVIIYDSD WNPHADLQAM ARAHRLGQTS KVMIYRLVSR
0801: GTIEERMMQL TKKKMILEHL VVGRLTKASN VNQEELDDII RYGSKELFDD DEDEAGKSRQ IHYDDAAIDR LLDRDQVDEE EYLEDEEDDE FLKGFKVANF
0901: EYIDEAKALA AKEEARKKAE AEAASNKANY WEELLKDRCV EQEVEEIAMG KGKRSRKQMA AADEDDITGL HELSSEDEDY SYDDDVSDND TSLPANVSGR
1001: KAQYSKKNSR NVDSLPLMEG EGRALKVYGF NHVQRTQFLQ TLMRYGFQNY DWKEYLPRLK GKSVEEIQRY GELVMAHLVE DTNDSPTYAD GVPKEMRADE
1101: TLVRLAKISL VEEKVAAMEQ GKITKLFPNY LLHEFTGLSG GRIWKGEHDL LLLKALIKHG YARWQYISDD RDNGLFETAR RELNLPSANE LISSQSNNEA
1201: NGNLENTQEV QVNPTSLSQY RDIQRKIVEF IRKRYHILEK CLDIEYAVIK TNTPVPDDLT EQNVPMGHSP AVPDISEVLR ELPPLVPISA KEVASDGSTD
1301: QAHLSHLYNK MCGVLEDSGP RALNSFCGDK AASASLANSL HQFEKVCEDV DRVLRVQENG AATPKEQVVD ASVEEAKPPQ DAGVVAANGV GPSTVKPEDK
1401: MEIDG
0001: MANLLQRLRR RTGPKPDYIE DKLDEYIREE QVEETGGSNQ DCPLGEIEKI LDREWRPTAS NNPNSSDNGT PTLVVVKQYL VKWKGLSYLH CSWVPEQEFE
0101: KAYKSHPHLK LKLRVTRFNA AMDVFIAENG AHEFIAIRPE WKTVDRIIAC REGDDGEEYL VKYKELSYRN SYWESESDIS DFQNEIQRFK DINSSSRRDK
0201: YVENERNREE FKQFDLTPEF LTGTLHTYQL EGLNFLRYSW SKKTNVILAD EMGLGKTIQS IAFLASLFEE NLSPHLVVAP LSTIRNWERE FATWAPHMNV
0301: VMYTGDSEAR DVIWEHEFYF SEGRKSKFDV LLTTYEMVHP GISVLSPIKW TCMIIDEGHR LKNQKSKLYS SLSQFTSKHI VLLTGTPLQN NLNELFALMH
0401: FLDADKFGSL EKFQDINKEE QISRLHQMLA PHLLRRLKKD VLKDKVPPKK ELILRVDMSS QQKEVYKAVI TNNYQVLTKK RDAKISNVLM KLRQVCSHPY
0501: LLPDFEPRFE DANEAFTKLL EASGKLQLLD KMMVKLKEQG HRVLIYTQFQ HTLYLLEDYF TFKNWNYERI DGKISGPERQ VRIDRFNAEN SNRFCFLLST
0601: RAGGIGINLA TADTVIIYDS DWNPHADLQA MARVHRLGQT NKVMIYRLIH KGTVEERMME ITKNKMLLEH LVVGKQHLCQ DELDDIIKYG SKELFSEEND
0701: EAGRSGKIHY DDAAIEQLLD RNHVDAVEVS LDDEEETDFL KNFKVASFEY VDDENEAAAL EEAQAIENNS SVRNADRTSH WKDLLKDKYE VQQAEELSAL
0801: GKRKRNGKQV MYAEDDLDGL EEISDEEDEY CLDDLKVTSD EEEEADEPEA ARQRKPRTVT RPYRKRARDN SEEIPLMEGE GRYLMVLGFN ETERDIFLRT
0901: FKRYGAGNFD WKEFVNPLYM KTYDEINKYG ILFLKHIAEN PTDNSTNFKV ITAMVYADGV PKEGISSDEL LVSMTFMMLV KEKCQFLDNH PTAPVFSNYV
1001: ISKYNLRNGA FSKEEHDRIL IPAVSKHGYG RWVAIVEDEE IGFQEVACKD LNIPFPPDTK SARKRICDHV GKRVKKMEDA IKYEYAEKIL AEQAKAETKG
1101: TSFVDAEKEM LKNDPITSKK NSATAVDNKQ GRVEMAQSYD QSVNEKSGES FQTYLDIQPL NRMPRESFKP LEPINEEIST RLSVGTDHDV EMDAADNIIV
1201: LD
0101: KAYKSHPHLK LKLRVTRFNA AMDVFIAENG AHEFIAIRPE WKTVDRIIAC REGDDGEEYL VKYKELSYRN SYWESESDIS DFQNEIQRFK DINSSSRRDK
0201: YVENERNREE FKQFDLTPEF LTGTLHTYQL EGLNFLRYSW SKKTNVILAD EMGLGKTIQS IAFLASLFEE NLSPHLVVAP LSTIRNWERE FATWAPHMNV
0301: VMYTGDSEAR DVIWEHEFYF SEGRKSKFDV LLTTYEMVHP GISVLSPIKW TCMIIDEGHR LKNQKSKLYS SLSQFTSKHI VLLTGTPLQN NLNELFALMH
0401: FLDADKFGSL EKFQDINKEE QISRLHQMLA PHLLRRLKKD VLKDKVPPKK ELILRVDMSS QQKEVYKAVI TNNYQVLTKK RDAKISNVLM KLRQVCSHPY
0501: LLPDFEPRFE DANEAFTKLL EASGKLQLLD KMMVKLKEQG HRVLIYTQFQ HTLYLLEDYF TFKNWNYERI DGKISGPERQ VRIDRFNAEN SNRFCFLLST
0601: RAGGIGINLA TADTVIIYDS DWNPHADLQA MARVHRLGQT NKVMIYRLIH KGTVEERMME ITKNKMLLEH LVVGKQHLCQ DELDDIIKYG SKELFSEEND
0701: EAGRSGKIHY DDAAIEQLLD RNHVDAVEVS LDDEEETDFL KNFKVASFEY VDDENEAAAL EEAQAIENNS SVRNADRTSH WKDLLKDKYE VQQAEELSAL
0801: GKRKRNGKQV MYAEDDLDGL EEISDEEDEY CLDDLKVTSD EEEEADEPEA ARQRKPRTVT RPYRKRARDN SEEIPLMEGE GRYLMVLGFN ETERDIFLRT
0901: FKRYGAGNFD WKEFVNPLYM KTYDEINKYG ILFLKHIAEN PTDNSTNFKV ITAMVYADGV PKEGISSDEL LVSMTFMMLV KEKCQFLDNH PTAPVFSNYV
1001: ISKYNLRNGA FSKEEHDRIL IPAVSKHGYG RWVAIVEDEE IGFQEVACKD LNIPFPPDTK SARKRICDHV GKRVKKMEDA IKYEYAEKIL AEQAKAETKG
1101: TSFVDAEKEM LKNDPITSKK NSATAVDNKQ GRVEMAQSYD QSVNEKSGES FQTYLDIQPL NRMPRESFKP LEPINEEIST RLSVGTDHDV EMDAADNIIV
1201: LD
Arabidopsis Description
CHR7CHD3-type chromatin-remodeling factor CHR7 [Source:UniProtKB/Swiss-Prot;Acc:F4JTF6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.