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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
  • plastid 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d006428_P002 Maize nucleus 89.34 90.73
Zm00001d021541_P002 Maize nucleus 90.51 90.47
Os07t0497100-01 Rice nucleus 73.07 71.93
TraesCS2B01G251900.1 Wheat nucleus 72.03 71.49
TraesCS2D01G234200.1 Wheat nucleus 72.12 71.38
TraesCS2A01G227900.1 Wheat nucleus 71.99 71.31
CDY67658 Canola cytosol, nucleus 26.98 53.14
CDY68094 Canola nucleus 27.52 49.08
VIT_01s0011g01480.t01 Wine grape nucleus 45.68 47.1
KRH42374 Soybean nucleus 44.78 46.03
GSMUA_Achr9P11210_001 Banana nucleus 41.14 44.46
KRH58495 Soybean nucleus 45.59 43.43
GSMUA_Achr6P29570_001 Banana nucleus 41.32 42.9
Bra027574.1-P Field mustard nucleus 42.0 42.03
AT5G44800.1 Thale cress nucleus 41.95 41.97
Solyc02g068560.2.1 Tomato nucleus 44.15 41.21
EER97913 Sorghum cytosol 10.21 29.18
EER93549 Sorghum cytosol 10.39 27.63
KXG19483 Sorghum cytosol 15.74 26.43
OQU93492 Sorghum cytosol 10.34 25.36
KXG32501 Sorghum nucleus 12.41 24.93
EES19009 Sorghum cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 11.92 23.51
KXG33813 Sorghum nucleus 11.51 22.22
KXG26914 Sorghum nucleus 9.17 21.01
KXG36860 Sorghum nucleus 15.65 20.15
OQU92590 Sorghum nucleus 10.97 17.37
OQU85588 Sorghum nucleus 13.35 14.65
OQU84199 Sorghum nucleus 12.54 13.15
OQU76185 Sorghum nucleus 14.66 8.06
Protein Annotations
Gene3D:1.10.10.60Gene3D:1.20.920.10MapMan:12.4.1.1.5Gene3D:2.40.50.40Gene3D:3.40.50.10810Gene3D:3.40.50.300
UniProt:A0A1B6QEB1InterPro:Bromodomain-like_sfInterPro:Chromo-like_dom_sfInterPro:Chromo/chromo_shadow_domInterPro:Chromo_domainInterPro:DUF1087
GO:GO:0000166GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0005488GO:GO:0005515
GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0009506
GO:GO:0046872InterPro:Helicase_ATP-bdInterPro:Helicase_CInterPro:Homeobox-like_sfInterPro:IPR000953InterPro:IPR001650
InterPro:IPR014001InterPro:IPR017877InterPro:IPR019787InterPro:IPR036427InterPro:IPR038718EnsemblPlants:KXG36264
ProteinID:KXG36264ProteinID:KXG36264.1InterPro:Myb-like_domInterPro:P-loop_NTPasePFAM:PF00176PFAM:PF00271
PFAM:PF00385PFAM:PF00628PFAM:PF06465ScanProsite:PS01359PFscan:PS50013PFscan:PS50016
PFscan:PS50090PFscan:PS51192PFscan:PS51194PANTHER:PTHR10799PANTHER:PTHR10799:SF939SMART:SM00249
SMART:SM00298SMART:SM00487SMART:SM00490SMART:SM01147InterPro:SNF2-like_sfInterPro:SNF2_N
EnsemblPlantsGene:SORBI_3002G308700SUPFAM:SSF46689SUPFAM:SSF52540SUPFAM:SSF54160SUPFAM:SSF57903UniParc:UPI00081AB91A
InterPro:Zinc_finger_PHD-type_CSInterPro:Znf_FYVE_PHDInterPro:Znf_PHDInterPro:Znf_PHD-fingerSEG:seg:
Description
hypothetical protein
Coordinates
chr2:+:68305457..68317492
Molecular Weight (calculated)
247111.0 Da
IEP (calculated)
6.853
GRAVY (calculated)
-0.697
Length
2224 amino acids
Sequence
(BLAST)
0001: MKERSSLCES AADGNWGLKY KRKRSKLTSP SNENEATSPT SDSPMSHAST KKKLKHDTNI SPSAKKIRGH DGYFFECVEC DLGGNLLCCD SCPRVYHLEC
0101: LNPPLKRAPP GNWQCPRCRP KKGSLKLLGN VEADTSKHER STRMYAGTTS DSPPSHTKVS FKTRNSTQDK TGSNEQGKHS SGGTMKGGDS GMKNNEVEKK
0201: KTLILHLKKR STKELSENAK SSKTEFVGEP SEEKTVKHGS VLKLKKHPHR MDLSPNKSKS RRQNSQRESK RSGTKKLKYS TSDDDSVSSS EPSTSLDNSE
0301: SPPKRKPSDG KAPSSSTKKG KKKVKFVEKK HSEEQGVAGD KITTPQEDQQ VDRILGCRLQ TSQINPTSHA SLEQFESANL KVDGMESSRN GTVEDVCADG
0401: SANHSGHSLE MQKDRNSKSH EKETIKQEQA KKILSVCSGD ETSIMKDDQV DRENVSPSKK GEDETRTDLP AEKDDTKLAV TRADTMVRTN QEHTDESKQH
0501: GKIEEITDKD YNDAGYEFLI KWVGKSNIHN SWVAESEVKI LAKRKLENYK AKYGTSLINI CKEQWCQPQR VIALRASVDE VEEALIKWCG LPYDECTWER
0601: IDEPTLMKYS HLVTQFKNFE CQALDKDMVK DYANTRNRQE LNVLVDQPKE LQGGMLFPHQ LEALNWLRKC WYKSKNVILA DEMGLGKTVS ACAFLSSLCC
0701: EFKISLPCLV LVPLSTMPNW MAEFASWAPH LNVVEYHGSA RSRSIIRQYE WHAGDASQIG KTKRSYKFNV LLTTYEMVLV DAAYLRSVSW EVLIVDEGHR
0801: LKNSSSKLFS LLNSLSFQHR VLLTGTPLQN NIGEMYNLLN FLQPTSFPSL SSFEEKFNDL TTAEKVEELK KLVAPHMLRR LKKDAMQNIP PKTERMVPVE
0901: LTSIQAEYYR AMLTKNYQVL RNIGKGGAHQ SLLNIVMQLR KVCNHPYLIP GTEPESGSPE FLHDMRIKAS AKLALLHSML KILHKEGHRV LIFSQMTKLL
1001: DILEDYLTLE FGPKTFERVD GSVSVAERQA AIARFNQDKT RFVFLLSTRS CGLGINLATA DTVIIYDSDF NPHADIQAMN RAHRIGQSNR LLVYRLVVRA
1101: SVEERILQLA KKKLMLDQLF VNKSESQKEV EDIIRWGTEE LFGSSDSVDD KDSNEASGPV ADVEFKHRRK TGGLGDVYED KCIGGSTKLV WDENAILKLL
1201: DRSNLPSSLA EGTDGDLDND MLGTVKSIDW NDELNDDPGA NEDIAPIDND GSEQASESKQ GATNRSEENE WDKLLRVRWE QYQIEEEASL GRGKRLRKAV
1301: SYRETFATLP NEALSEDSDE GDEPKREYTA AGLALKEKYG KLRARQKERI AQRHIIKNYA DDNLEEFMTA YDSIANGPAE NPLIIVEDPN SSQLSGAKRF
1401: SESTGEMRQS SKKSKRYSDI PQDIYARIPG NAASSKHHSK ATDVFNPGTP DHLLPVLGLC APNADQVNSY KNSLCAPSIK EHKRASGDIV NKQLSTSADH
1501: SNEHRNEAQP ASDKAIFPGA SEEALRRISN MIPESYFPFS HIPPVSGKGV DPVENPGPSI ASFQGKLGLP NFSLEDNTPL KHIKPVPDIF PNLSLGAHKD
1601: YIRSSVPELP ESSLLPNFMA DIAGTSKQKS FMSGLLPGLG LSPGQPIHSA MPDNHKKVLD NIMMRAQYAS NKFLKKRSKL DYWSEDELDA LWIGVRRHGR
1701: GNWDAMLRDP KLKFLNNRTS EELASRWILE EQKIIDEPMS TATRRSNSTA FPGISDAMMS RALNESNFSK MRMEQPKLQS HLTDIQLGSS DILSRFPHIE
1801: AANYINSGEG GTPQIPWQDF KHRSSYGGDF HGGAFDKLEK PDVGPIPPFM PNPFMTDSIG SLPINRKNNS SIPHSEIRSS SRENIHLSGV SDGQINLLHE
1901: MQRRVRSGKQ PMEMNLNHID HSNSQLDNTS DLGGLKSNKL PHWLQEAVRA PSSKPPEREL PATVSAIAQS VCLLLGEQEP SIPPFLIPEA PLSRPKDPRI
2001: NSKKRKLRKA QQSTSHVEHS KIGSGEGDCI TTPAPPSLEA IATPSVHCND GAPSLNLNSA SLSSLAGSKG QDELPPTFEE SNQTVDCSEA LAAKLEAPEI
2101: ACQITSSSPV DDKASESSGS PVKDTPDAGV RLQGSDNSAM AFSALPLVDE APGTSSRAAG MPVACDCNDL KEDVPLDNAE STGNLEEPTD ELTLVDTDAV
2201: VASTFLSAKT ANEDRVDEMT SDEH
Best Arabidopsis Sequence Match ( AT5G44800.1 )
(BLAST)
0001: MKDSGSEMIK RDWVMKQKRR KLPSILDILD QKVDSSMAFD SPEYTSSSKP SKQRLKTDST PERNSSKRKG NDGNYFECVI CDLGGDLLCC DSCPRTYHTA
0101: CLNPPLKRIP NGKWICPKCS PNSEALKPVN RLDAIAKRAR TKTKKRNSKA GPKCERASQI YCSSIISGEQ SSEKGKSISA EESKSTGKEV YSSPMDGCST
0201: AELGHASADD RPDSSSHGED DLGKPVIPTA DLPSDAGLTL LSCEDLSESK LSDTEKTHEA PVEKLEHASS EIVENKTVAE METGKGKRKK RKRELNDGES
0301: LERCKTDKKR AKKSLSKVGS SSQTTKSPES SKKKKKKNRV TLKSLSKPQS KTETPEKVKK LPKEERRAVR ATNKSSSCLE DTNSLPVGNL QVHRVLGCRI
0401: QGLTKTSLCS ALSDDLCSDN LQATDQRDSL VQDTNAELVV AEDRIDSSSE TGKSSRDSRL RDKDMDDSAL GTEGMVEVKE EMLSEDISNA TLSRHVDDED
0501: MKVSETHVSV ERELLEEAHQ ETGEKSTVAD EEIEEPVAAK TSDLIGETVS YEFLVKWVDK SNIHNTWISE AELKGLAKRK LENYKAKYGT AVINICEDKW
0601: KQPQRIVALR VSKEGNQEAY VKWTGLAYDE CTWESLEEPI LKHSSHLIDL FHQYEQKTLE RNSKGNPTRE RGEVVTLTEQ PQELRGGALF AHQLEALNWL
0701: RRCWHKSKNV ILADEMGLGK TVSASAFLSS LYFEFGVARP CLVLVPLSTM PNWLSEFSLW APLLNVVEYH GSAKGRAIIR DYEWHAKNST GTTKKPTSYK
0801: FNVLLTTYEM VLADSSHLRG VPWEVLVVDE GHRLKNSESK LFSLLNTFSF QHRVLLTGTP LQNNIGEMYN LLNFLQPSSF PSLSSFEERF HDLTSAEKVE
0901: ELKKLVAPHM LRRLKKDAMQ NIPPKTERMV PVELTSIQAE YYRAMLTKNY QILRNIGKGV AQQSMLNIVM QLRKVCNHPY LIPGTEPESG SLEFLHDMRI
1001: KASAKLTLLH SMLKVLHKEG HRVLIFSQMT KLLDILEDYL NIEFGPKTFE RVDGSVAVAD RQAAIARFNQ DKNRFVFLLS TRACGLGINL ATADTVIIYD
1101: SDFNPHADIQ AMNRAHRIGQ SKRLLVYRLV VRASVEERIL QLAKKKLMLD QLFVNKSGSQ KEFEDILRWG TEELFNDSAG ENKKDTAESN GNLDVIMDLE
1201: SKSRKKGGGL GDVYQDKCTE GNGKIVWDDI AIMKLLDRSN LQSASTDAAD TELDNDMLGS VKPVEWNEET AEEQVGAESP ALVTDDTGEP SSERKDDDVV
1301: NFTEENEWDR LLRMRWEKYQ SEEEAALGRG KRLRKAVSYR EAYAPHTSGP VNESGGEDEK EPEPELKKEY TPAGRALKEK FTKLRERQKN LIARRNSVEE
1401: SLPSGNVDQV TEVANQDEES PTSMDLDDSK ASQQCDAQKR KASSSDPKPD LLSQHHHGAE CLPSLPPNNL PVLGLCAPNF TQSESSRRNY SRPGSRQNRP
1501: ITGPHFPFNL PQTSNLVERE ANDQEPPMGK LKPQNIKEEP FQQPLSNMDG WLPHRQFPPS GDFERPRSSG AAFADFQEKF PLLNLPFDDK LLPRFPFQPR
1601: TMGTSHQDIM ANLSMRKRFE GTGHSMQDLF GGTPMPFLPN MKIPPMDPPV FNQQEKDLPP LGLDQFPSAL SSIPENHRKV LENIMLRTGS GIGHVQKKKT
1701: RVDAWSEDEL DSLWIGIRRH GYGNWETILR DPRLKFSKFK TPEYLAARWE EEQRKFLDSL SSLPSKSSRT DKSTKSSLFP GLPQGIMNRA LHGKYATPPR
1801: FQSHLTDIKL GFGDLASPLP LFEPSDHLGF RSEHFPPMAN LCTDNLPGEP SAGPSERAGT STNIPNEKPF PLNSLGMGNL GSLGLDSLSS LNTLRAEEKR
1901: DAIKRGKLPL FLDMPLPQML DSSNNVFLGR SANPSFLHPN RGLNPSNPMG RDIMGISSSE NKLPHWLRNV VTVPTVKSPE PPTLPPTVSA IAQSVRVLYG
2001: EDSTTIPPFV IPEPPPPAPR DPRHSLRKKR KRKLHSSSQK TTDIGSSSHN AVESSSQGNP QTSATPPLPP PSLAGETSGS SQPKLPPHNL NSTEPLSSEA
2101: IIIPPPEEDS VIAAAPSEAP GPSLEGITGT TKSISLESQS SEPETINQDG DLDPETDEKV ESERTPLHSD EKQEEQESEN ALNKQCEPIE AESQNTNAEE
2201: EAEAQEEDEE SMKMVTGNSL SDD
Arabidopsis Description
CHR4PKR1 [Source:UniProtKB/TrEMBL;Acc:A0A178UKW2]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.