Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX72050 | Canola | cytosol | 81.49 | 85.2 |
| Bra007318.1-P | Field mustard | nucleus | 82.6 | 85.03 |
| Bra014632.1-P | Field mustard | cytosol | 81.56 | 82.96 |
| CDY30994 | Canola | nucleus | 32.4 | 77.97 |
| CDX88940 | Canola | nucleus | 81.17 | 75.57 |
| VIT_08s0007g09020.t01 | Wine grape | nucleus | 68.38 | 67.63 |
| KRH33202 | Soybean | nucleus | 63.77 | 67.31 |
| KRG95191 | Soybean | nucleus | 66.69 | 67.08 |
| CDY06115 | Canola | nucleus | 81.88 | 66.97 |
| KRH66858 | Soybean | nucleus | 66.49 | 66.84 |
| Solyc04g016370.2.1 | Tomato | nucleus | 64.81 | 64.85 |
| GSMUA_Achr8P00120_001 | Banana | nucleus | 58.12 | 61.22 |
| OQU92590 | Sorghum | nucleus | 53.12 | 58.22 |
| TraesCS4D01G159900.1 | Wheat | nucleus | 55.26 | 56.96 |
| TraesCS4B01G162000.1 | Wheat | nucleus | 55.26 | 56.88 |
| TraesCS4A01G147000.1 | Wheat | nucleus | 55.0 | 56.62 |
| HORVU4Hr1G046140.4 | Barley | nucleus | 54.94 | 55.62 |
| Zm00001d029180_P002 | Maize | nucleus | 55.06 | 55.61 |
| Zm00001d047471_P002 | Maize | nucleus | 54.35 | 53.41 |
| AT5G66750.1 | Thale cress | cytosol | 14.87 | 29.97 |
| AT2G02090.1 | Thale cress | cytosol, plastid | 14.03 | 28.31 |
| AT2G44980.2 | Thale cress | cytosol | 14.42 | 25.31 |
| AT3G06400.3 | Thale cress | nucleus | 16.17 | 23.56 |
| AT5G19310.1 | Thale cress | nucleus | 16.17 | 23.4 |
| AT3G06010.1 | Thale cress | nucleus | 16.43 | 22.96 |
| AT5G18620.2 | Thale cress | nucleus | 15.91 | 22.85 |
| AT4G31900.1 | Thale cress | nucleus | 14.09 | 18.05 |
| AT2G25170.3 | Thale cress | endoplasmic reticulum | 15.39 | 16.81 |
| AT3G12810.1 | Thale cress | nucleus | 20.78 | 15.57 |
| AT2G13370.2 | Thale cress | nucleus | 16.17 | 14.44 |
| AT2G46020.3 | Thale cress | plastid | 18.51 | 13.0 |
| AT5G44800.1 | Thale cress | nucleus | 16.23 | 11.25 |
| AT2G28290.5 | Thale cress | nucleus | 16.49 | 7.1 |
Protein Annotations
| MapMan:12.4.3.1 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | EntrezGene:824897 | ProteinID:AEE79638.1 | ArrayExpress:AT3G57300 |
| EnsemblPlantsGene:AT3G57300 | RefSeq:AT3G57300 | TAIR:AT3G57300 | RefSeq:AT3G57300-TAIR-G | EnsemblPlants:AT3G57300.2 | TAIR:AT3G57300.2 |
| Unigene:At.910 | ncoils:Coil | InterPro:DBINO | UniProt:F4J277 | GO:GO:0000003 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006281 | GO:GO:0006338 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0006950 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009791 |
| GO:GO:0009987 | GO:GO:0010228 | GO:GO:0016043 | GO:GO:0016444 | GO:GO:0016787 | GO:GO:0016887 |
| GO:GO:0031011 | GO:GO:0042393 | GO:GO:0045739 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | Symbol:INO80 |
| InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR020838 | InterPro:IPR038718 | InterPro:Ino80 | RefSeq:NP_001190117.1 |
| InterPro:P-loop_NTPase | PFAM:PF00176 | PFAM:PF00271 | PFAM:PF13892 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51413 | PANTHER:PTHR10799 | PANTHER:PTHR10799:SF868 |
| SMART:SM00487 | SMART:SM00490 | InterPro:SNF2-like_sf | InterPro:SNF2_N | SUPFAM:SSF52540 | UniParc:UPI0001E92E5C |
| SEG:seg | : | : | : | : | : |
Description
INO80DNA helicase INO80-like protein [Source:UniProtKB/TrEMBL;Acc:F4J277]
Coordinates
chr3:+:21199488..21207885
Molecular Weight (calculated)
175970.0 Da
IEP (calculated)
9.189
GRAVY (calculated)
-0.607
Length
1540 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDPSRRPPKD SPYANLFDLE PLMKFRIPKP EDEVDYYGSS SQDESRSTQG GVVANYSNGS KSRMNASSKK RKRWTEAEDA EDDDDLYNQH VTEEHYRSML
0101: GEHVQKFKNR SKETQGNPPH LMGFPVLKSN VGSYRGRKPG NDYHGRFYDM DNSPNFAADV TPHRRGSYHD RDITPKIAYE PSYLDIGDGV IYKIPPSYDK
0201: LVASLNLPSF SDIHVEEFYL KGTLDLRSLA ELMASDKRSG VRSRNGMGEP RPQYESLQAR MKALSPSNST PNFSLKVSEA AMNSAIPEGS AGSTARTILS
0301: EGGVLQVHYV KILEKGDTYE IVKRSLPKKL KAKNDPAVIE KTERDKIRKA WINIVRRDIA KHHRIFTTFH RKLSIDAKRF ADGCQREVRM KVGRSYKIPR
0401: TAPIRTRKIS RDMLLFWKRY DKQMAEERKK QEKEAAEAFK REQEQRESKR QQQRLNFLIK QTELYSHFMQ NKTDSNPSEA LPIGDENPID EVLPETSAAE
0501: PSEVEDPEEA ELKEKVLRAA QDAVSKQKQI TDAFDTEYMK LRQTSEMEGP LNDISVSGSS NIDLHNPSTM PVTSTVQTPE LFKGTLKEYQ MKGLQWLVNC
0601: YEQGLNGILA DEMGLGKTIQ AMAFLAHLAE EKNIWGPFLV VAPASVLNNW ADEISRFCPD LKTLPYWGGL QERTILRKNI NPKRVMFFST WIISFDPWAV
0701: RQICICKRAC NVVRFQTLSD MDAGFHILIT SYQLLVTDEK YFRRVKWQYM VLDEAQAIKS SSSIRWKTLL SFNCRNRLLL TGTPIQNNMA ELWALLHFIM
0801: PMLFDNHDQF NEWFSKGIEN HAEHGGTLNE HQLNRLHAIL KPFMLRRVKK DVVSELTTKT EVTVHCKLSS RQQAFYQAIK NKISLAELFD SNRGQFTDKK
0901: VLNLMNIVIQ LRKVCNHPEL FERNEGSSYL YFGVTSNSLL PHPFGELEDV HYSGGQNPII YKIPKLLHQE VLQNSETFCS SVGRGISRES FLKHFNIYSP
1001: EYILKSIFPS DSGVDQVVSG SGAFGFSRLM DLSPSEVGYL ALCSVAERLL FSILRWERQF LDELVNSLME SKDGDLSDNN IERVKTKAVT RMLLMPSKVE
1101: TNFQKRRLST GPTRPSFEAL VISHQDRFLS SIKLLHSAYT YIPKARAPPV SIHCSDRNSA YRVTEELHQP WLKRLLIGFA RTSEANGPRK PNSFPHPLIQ
1201: EIDSELPVVQ PALQLTHRIF GSCPPMQSFD PAKLLTDSGK LQTLDILLKR LRAGNHRVLL FAQMTKMLNI LEDYMNYRKY KYLRLDGSST IMDRRDMVRD
1301: FQHRSDIFVF LLSTRAGGLG INLTAADTVI FYESDWNPTL DLQAMDRAHR LGQTKDVTVY RLICKETVEE KILHRASQKN TVQQLVMTGG HVQGDDFLGA
1401: ADVVSLLMDD AEAAQLEQKF RELPLQVKDR QKKKTKRIRI DAEGDATLEE LEDVDRQDNG QEPLEEPEKP KSSNKKRRAA SNPKARAPQK AKEEANGEDT
1501: PQRTKRVKRQ TKSINESLEP VFSASVTESN KGFDPSSSAN
0101: GEHVQKFKNR SKETQGNPPH LMGFPVLKSN VGSYRGRKPG NDYHGRFYDM DNSPNFAADV TPHRRGSYHD RDITPKIAYE PSYLDIGDGV IYKIPPSYDK
0201: LVASLNLPSF SDIHVEEFYL KGTLDLRSLA ELMASDKRSG VRSRNGMGEP RPQYESLQAR MKALSPSNST PNFSLKVSEA AMNSAIPEGS AGSTARTILS
0301: EGGVLQVHYV KILEKGDTYE IVKRSLPKKL KAKNDPAVIE KTERDKIRKA WINIVRRDIA KHHRIFTTFH RKLSIDAKRF ADGCQREVRM KVGRSYKIPR
0401: TAPIRTRKIS RDMLLFWKRY DKQMAEERKK QEKEAAEAFK REQEQRESKR QQQRLNFLIK QTELYSHFMQ NKTDSNPSEA LPIGDENPID EVLPETSAAE
0501: PSEVEDPEEA ELKEKVLRAA QDAVSKQKQI TDAFDTEYMK LRQTSEMEGP LNDISVSGSS NIDLHNPSTM PVTSTVQTPE LFKGTLKEYQ MKGLQWLVNC
0601: YEQGLNGILA DEMGLGKTIQ AMAFLAHLAE EKNIWGPFLV VAPASVLNNW ADEISRFCPD LKTLPYWGGL QERTILRKNI NPKRVMFFST WIISFDPWAV
0701: RQICICKRAC NVVRFQTLSD MDAGFHILIT SYQLLVTDEK YFRRVKWQYM VLDEAQAIKS SSSIRWKTLL SFNCRNRLLL TGTPIQNNMA ELWALLHFIM
0801: PMLFDNHDQF NEWFSKGIEN HAEHGGTLNE HQLNRLHAIL KPFMLRRVKK DVVSELTTKT EVTVHCKLSS RQQAFYQAIK NKISLAELFD SNRGQFTDKK
0901: VLNLMNIVIQ LRKVCNHPEL FERNEGSSYL YFGVTSNSLL PHPFGELEDV HYSGGQNPII YKIPKLLHQE VLQNSETFCS SVGRGISRES FLKHFNIYSP
1001: EYILKSIFPS DSGVDQVVSG SGAFGFSRLM DLSPSEVGYL ALCSVAERLL FSILRWERQF LDELVNSLME SKDGDLSDNN IERVKTKAVT RMLLMPSKVE
1101: TNFQKRRLST GPTRPSFEAL VISHQDRFLS SIKLLHSAYT YIPKARAPPV SIHCSDRNSA YRVTEELHQP WLKRLLIGFA RTSEANGPRK PNSFPHPLIQ
1201: EIDSELPVVQ PALQLTHRIF GSCPPMQSFD PAKLLTDSGK LQTLDILLKR LRAGNHRVLL FAQMTKMLNI LEDYMNYRKY KYLRLDGSST IMDRRDMVRD
1301: FQHRSDIFVF LLSTRAGGLG INLTAADTVI FYESDWNPTL DLQAMDRAHR LGQTKDVTVY RLICKETVEE KILHRASQKN TVQQLVMTGG HVQGDDFLGA
1401: ADVVSLLMDD AEAAQLEQKF RELPLQVKDR QKKKTKRIRI DAEGDATLEE LEDVDRQDNG QEPLEEPEKP KSSNKKRRAA SNPKARAPQK AKEEANGEDT
1501: PQRTKRVKRQ TKSINESLEP VFSASVTESN KGFDPSSSAN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.