Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
extracellular: 29876421 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_08s0007g09020.t01 | Wine grape | nucleus | 72.71 | 71.87 |
| KRH33202 | Soybean | nucleus | 66.15 | 69.77 |
| KRH66858 | Soybean | nucleus | 69.07 | 69.39 |
| KRG95191 | Soybean | nucleus | 68.88 | 69.24 |
| CDX72050 | Canola | cytosol | 62.57 | 65.38 |
| Bra007318.1-P | Field mustard | nucleus | 63.22 | 65.04 |
| AT3G57300.2 | Thale cress | cytosol | 64.85 | 64.81 |
| GSMUA_Achr8P00120_001 | Banana | nucleus | 61.21 | 64.43 |
| Bra014632.1-P | Field mustard | cytosol | 63.09 | 64.13 |
| CDY30994 | Canola | nucleus | 25.73 | 61.88 |
| OQU92590 | Sorghum | nucleus | 56.14 | 61.49 |
| TraesCS4D01G159900.1 | Wheat | nucleus | 57.12 | 58.84 |
| TraesCS4B01G162000.1 | Wheat | nucleus | 56.99 | 58.62 |
| TraesCS4A01G147000.1 | Wheat | nucleus | 56.86 | 58.49 |
| CDX88940 | Canola | nucleus | 62.77 | 58.4 |
| Zm00001d029180_P002 | Maize | nucleus | 57.24 | 57.77 |
| HORVU4Hr1G046140.4 | Barley | nucleus | 56.92 | 57.59 |
| Zm00001d047471_P002 | Maize | nucleus | 56.92 | 55.9 |
| CDY06115 | Canola | nucleus | 63.09 | 51.57 |
| Solyc01g090650.1.1 | Tomato | cytosol, nucleus, plastid | 13.39 | 33.61 |
| Solyc02g062780.2.1 | Tomato | cytosol | 15.4 | 30.74 |
| Solyc02g085390.2.1 | Tomato | cytosol | 15.59 | 29.59 |
| Solyc02g014770.2.1 | Tomato | nucleus | 13.65 | 28.46 |
| Solyc08g029120.1.1 | Tomato | nucleus | 12.67 | 27.62 |
| Solyc01g079690.2.1 | Tomato | nucleus | 16.76 | 25.93 |
| Solyc06g054560.2.1 | Tomato | nucleus | 16.31 | 23.66 |
| Solyc01g067390.2.1 | Tomato | nucleus | 16.11 | 23.29 |
| Solyc03g063220.1.1 | Tomato | nucleus | 20.08 | 19.22 |
| Solyc06g065730.2.1 | Tomato | nucleus | 16.37 | 17.54 |
| Solyc12g099910.1.1 | Tomato | nucleus | 17.09 | 15.41 |
| Solyc01g094800.2.1 | Tomato | nucleus | 18.78 | 12.92 |
| Solyc02g068560.2.1 | Tomato | nucleus | 17.41 | 11.25 |
| Solyc11g062010.1.1 | Tomato | nucleus | 18.0 | 10.39 |
Protein Annotations
| MapMan:12.4.3.1 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | ncoils:Coil | InterPro:DBINO | GO:GO:0000003 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006281 | GO:GO:0006338 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0006950 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009791 |
| GO:GO:0009987 | GO:GO:0010228 | GO:GO:0016043 | GO:GO:0016444 | GO:GO:0016787 | GO:GO:0016887 |
| GO:GO:0031011 | GO:GO:0042393 | GO:GO:0045739 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR014001 | InterPro:IPR020838 | InterPro:IPR038718 | InterPro:Ino80 | UniProt:K4BQD7 | InterPro:P-loop_NTPase |
| PFAM:PF00176 | PFAM:PF00271 | PFAM:PF13892 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51413 |
| PANTHER:PTHR10799 | PANTHER:PTHR10799:SF868 | SMART:SM00487 | SMART:SM00490 | InterPro:SNF2-like_sf | InterPro:SNF2_N |
| SUPFAM:SSF52540 | EnsemblPlantsGene:Solyc04g016370.2 | EnsemblPlants:Solyc04g016370.2.1 | UniParc:UPI0002767166 | SEG:seg | : |
Description
DNA helicase INO80 [Source:Projected from Arabidopsis thaliana (AT3G57300) UniProtKB/Swiss-Prot;Acc:Q8RXS6]
Coordinates
chr4:-:7168394..7184544
Molecular Weight (calculated)
174201.0 Da
IEP (calculated)
8.452
GRAVY (calculated)
-0.548
Length
1539 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDPKKQYSYS NLFNLESLIN FQLPQLDDDF DYHGNSSQDE SRGSPGGTAG NQINGTMSGR ELKKKRRTSY SSDEDGDRDR AHTTYISEEK YRTMLGEHVQ
0101: KYKRRLGNSS ASPAAIRNGV PVMRGGGGSR DQKSANDHRG GAVRLASTSE FFNNSTQSLG NHIQSDFLGP YGGDRSIYEP AFLDLGEDIT YKIPPPYEKL
0201: ALSLNLPTMS DIQVNEIYLK GTLDLETLAA MMASDKKLGT KRQAGMGDPK PQFESLQARL RAQPTNNAGQ RFSLLVSEAA LEASSMPEGA AGGIRRCILS
0301: DGGVLQVYYV KVLEKGDTYE IIERSLPKKP KLEKDPFAIE KEEMERIGKC WINLARKEIP KHHKIFINFH RRQLTDAKRI AEMCQREVKM KVSRSLKVMR
0401: GAAIRTRKLA RDMLVFWKRV DKEMAEVRKR EEKEAAEALK REQELREAKR QQQRLNFLLS QTELYSHFMQ NKSTLPSEAV TLGDEMINDP EILLASTEVR
0501: PGEEEDPEEA ELRKEALKAA QDAVSKQKMM TSAFDSECLK LRQAAEIEPS QQDVAAADID LLHPSTMPVA STVQAPELFK GTLKDYQLKG LQWLVNCYEQ
0601: GLNGILADEM GLGKTIQAMA FLAHLAEEKN IWGPFLVVAP ASVLNNWADE IGRFCPDLKT LPYWGGLQER VVLRKNINPK RLYRRDAGFH ILITSYQLLV
0701: SDEKYFRRVK WQYMVLDEAQ AIKSANSIRW KTLLSFNCRN RLLLTGTPVQ NNMAELWALL HFIMPTLFDS HEQFNEWFSK GIENHAEHGG SLNEHQLSRL
0801: HAILKPFMLR RVKKDVVSEL TGKTEITVHC KLSSRQQAFY QAIKNKISLA ELIDSSRGHL NEKKILNLMN IVIQLRKVCN HPELFERNEG SSYFYFGDVP
0901: YSLLPAPFGE LEDVFFSGGR SPVTYQMPKL VYRGANRSSM LHSTTGQGVN KELFEKYFNI YSPENIHRSI LQEIHESDVG YIRSGTFGFT RLVDMSPMEV
1001: AFSATGSLLE KLLFSIVRAN RQFLDEILDL MESGDDDLCC SHLGRDKVRA VTRMLLLPSK SEANFLRTRL ATGPGDAPFE ALAMEHQDRL LANVNLLNSI
1101: YSFIPRTRAP PINAHCSDRN FAYEMLEELH HPWIKRLLVG FARTSEYNGP RKPGAAHHLI QEIDSELPIT QPALQLTYQI FGSCPPMQPF DPAKMLTDSG
1201: KLQTLDILLK RLRAGNHRVL IFAQMTKMLD ILEDYMHYRK YRYLRLDGSS TIMDRRDMVK DFQHRNDIFV FLLSTRAGGL GINLTAADTV IFYESDWNPT
1301: LDLQAMDRAH RLGQTKDVTV YRLICKETVE EKILQRASQK NTVQQLVMTG GHVQGDLLAP EDVVSLLIDD AQLEQKMKEI PLQAKERQKR KGGTKGIRIG
1401: ADGDASLEDL TNSEFVGDDA LEPEKAKLSN KKRKGSTDKQ TPRSRPQKNP KNLQSASPNS LLEDDIDGFP QNIGMQQQRP KRQKRPTKSV NESLEPAFTA
1501: TIPMNREGNH NHPLSDISSG GGRGGAEEEG LRHNNPYAG
0101: KYKRRLGNSS ASPAAIRNGV PVMRGGGGSR DQKSANDHRG GAVRLASTSE FFNNSTQSLG NHIQSDFLGP YGGDRSIYEP AFLDLGEDIT YKIPPPYEKL
0201: ALSLNLPTMS DIQVNEIYLK GTLDLETLAA MMASDKKLGT KRQAGMGDPK PQFESLQARL RAQPTNNAGQ RFSLLVSEAA LEASSMPEGA AGGIRRCILS
0301: DGGVLQVYYV KVLEKGDTYE IIERSLPKKP KLEKDPFAIE KEEMERIGKC WINLARKEIP KHHKIFINFH RRQLTDAKRI AEMCQREVKM KVSRSLKVMR
0401: GAAIRTRKLA RDMLVFWKRV DKEMAEVRKR EEKEAAEALK REQELREAKR QQQRLNFLLS QTELYSHFMQ NKSTLPSEAV TLGDEMINDP EILLASTEVR
0501: PGEEEDPEEA ELRKEALKAA QDAVSKQKMM TSAFDSECLK LRQAAEIEPS QQDVAAADID LLHPSTMPVA STVQAPELFK GTLKDYQLKG LQWLVNCYEQ
0601: GLNGILADEM GLGKTIQAMA FLAHLAEEKN IWGPFLVVAP ASVLNNWADE IGRFCPDLKT LPYWGGLQER VVLRKNINPK RLYRRDAGFH ILITSYQLLV
0701: SDEKYFRRVK WQYMVLDEAQ AIKSANSIRW KTLLSFNCRN RLLLTGTPVQ NNMAELWALL HFIMPTLFDS HEQFNEWFSK GIENHAEHGG SLNEHQLSRL
0801: HAILKPFMLR RVKKDVVSEL TGKTEITVHC KLSSRQQAFY QAIKNKISLA ELIDSSRGHL NEKKILNLMN IVIQLRKVCN HPELFERNEG SSYFYFGDVP
0901: YSLLPAPFGE LEDVFFSGGR SPVTYQMPKL VYRGANRSSM LHSTTGQGVN KELFEKYFNI YSPENIHRSI LQEIHESDVG YIRSGTFGFT RLVDMSPMEV
1001: AFSATGSLLE KLLFSIVRAN RQFLDEILDL MESGDDDLCC SHLGRDKVRA VTRMLLLPSK SEANFLRTRL ATGPGDAPFE ALAMEHQDRL LANVNLLNSI
1101: YSFIPRTRAP PINAHCSDRN FAYEMLEELH HPWIKRLLVG FARTSEYNGP RKPGAAHHLI QEIDSELPIT QPALQLTYQI FGSCPPMQPF DPAKMLTDSG
1201: KLQTLDILLK RLRAGNHRVL IFAQMTKMLD ILEDYMHYRK YRYLRLDGSS TIMDRRDMVK DFQHRNDIFV FLLSTRAGGL GINLTAADTV IFYESDWNPT
1301: LDLQAMDRAH RLGQTKDVTV YRLICKETVE EKILQRASQK NTVQQLVMTG GHVQGDLLAP EDVVSLLIDD AQLEQKMKEI PLQAKERQKR KGGTKGIRIG
1401: ADGDASLEDL TNSEFVGDDA LEPEKAKLSN KKRKGSTDKQ TPRSRPQKNP KNLQSASPNS LLEDDIDGFP QNIGMQQQRP KRQKRPTKSV NESLEPAFTA
1501: TIPMNREGNH NHPLSDISSG GGRGGAEEEG LRHNNPYAG
0001: MDPSRRPPKD SPYANLFDLE PLMKFRIPKP EDEVDYYGSS SQDESRSTQG GVVANYSNGS KSRMNASSKK RKRWTEAEDA EDDDDLYNQH VTEEHYRSML
0101: GEHVQKFKNR SKETQGNPPH LMGFPVLKSN VGSYRGRKPG NDYHGRFYDM DNSPNFAADV TPHRRGSYHD RDITPKIAYE PSYLDIGDGV IYKIPPSYDK
0201: LVASLNLPSF SDIHVEEFYL KGTLDLRSLA ELMASDKRSG VRSRNGMGEP RPQYESLQAR MKALSPSNST PNFSLKVSEA AMNSAIPEGS AGSTARTILS
0301: EGGVLQVHYV KILEKGDTYE IVKRSLPKKL KAKNDPAVIE KTERDKIRKA WINIVRRDIA KHHRIFTTFH RKLSIDAKRF ADGCQREVRM KVGRSYKIPR
0401: TAPIRTRKIS RDMLLFWKRY DKQMAEERKK QEKEAAEAFK REQEQRESKR QQQRLNFLIK QTELYSHFMQ NKTDSNPSEA LPIGDENPID EVLPETSAAE
0501: PSEVEDPEEA ELKEKVLRAA QDAVSKQKQI TDAFDTEYMK LRQTSEMEGP LNDISVSGSS NIDLHNPSTM PVTSTVQTPE LFKGTLKEYQ MKGLQWLVNC
0601: YEQGLNGILA DEMGLGKTIQ AMAFLAHLAE EKNIWGPFLV VAPASVLNNW ADEISRFCPD LKTLPYWGGL QERTILRKNI NPKRMYRRDA GFHILITSYQ
0701: LLVTDEKYFR RVKWQYMVLD EAQAIKSSSS IRWKTLLSFN CRNRLLLTGT PIQNNMAELW ALLHFIMPML FDNHDQFNEW FSKGIENHAE HGGTLNEHQL
0801: NRLHAILKPF MLRRVKKDVV SELTTKTEVT VHCKLSSRQQ AFYQAIKNKI SLAELFDSNR GQFTDKKVLN LMNIVIQLRK VCNHPELFER NEGSSYLYFG
0901: VTSNSLLPHP FGELEDVHYS GGQNPIIYKI PKLLHQEVLQ NSETFCSSVG RGISRESFLK HFNIYSPEYI LKSIFPSDSG VDQVVSGSGA FGFSRLMDLS
1001: PSEVGYLALC SVAERLLFSI LRWERQFLDE LVNSLMESKD GDLSDNNIER VKTKAVTRML LMPSKVETNF QKRRLSTGPT RPSFEALVIS HQDRFLSSIK
1101: LLHSAYTYIP KARAPPVSIH CSDRNSAYRV TEELHQPWLK RLLIGFARTS EANGPRKPNS FPHPLIQEID SELPVVQPAL QLTHRIFGSC PPMQSFDPAK
1201: LLTDSGKLQT LDILLKRLRA GNHRVLLFAQ MTKMLNILED YMNYRKYKYL RLDGSSTIMD RRDMVRDFQH RSDIFVFLLS TRAGGLGINL TAADTVIFYE
1301: SDWNPTLDLQ AMDRAHRLGQ TKDVTVYRLI CKETVEEKIL HRASQKNTVQ QLVMTGGHVQ GDDFLGAADV VSLLMDDAEA AQLEQKFREL PLQVKDRQKK
1401: KTKRIRIDAE GDATLEELED VDRQDNGQEP LEEPEKPKSS NKKRRAASNP KARAPQKAKE EANGEDTPQR TKRVKRQTKS INESLEPVFS ASVTESNKGF
1501: DPSSSAN
0101: GEHVQKFKNR SKETQGNPPH LMGFPVLKSN VGSYRGRKPG NDYHGRFYDM DNSPNFAADV TPHRRGSYHD RDITPKIAYE PSYLDIGDGV IYKIPPSYDK
0201: LVASLNLPSF SDIHVEEFYL KGTLDLRSLA ELMASDKRSG VRSRNGMGEP RPQYESLQAR MKALSPSNST PNFSLKVSEA AMNSAIPEGS AGSTARTILS
0301: EGGVLQVHYV KILEKGDTYE IVKRSLPKKL KAKNDPAVIE KTERDKIRKA WINIVRRDIA KHHRIFTTFH RKLSIDAKRF ADGCQREVRM KVGRSYKIPR
0401: TAPIRTRKIS RDMLLFWKRY DKQMAEERKK QEKEAAEAFK REQEQRESKR QQQRLNFLIK QTELYSHFMQ NKTDSNPSEA LPIGDENPID EVLPETSAAE
0501: PSEVEDPEEA ELKEKVLRAA QDAVSKQKQI TDAFDTEYMK LRQTSEMEGP LNDISVSGSS NIDLHNPSTM PVTSTVQTPE LFKGTLKEYQ MKGLQWLVNC
0601: YEQGLNGILA DEMGLGKTIQ AMAFLAHLAE EKNIWGPFLV VAPASVLNNW ADEISRFCPD LKTLPYWGGL QERTILRKNI NPKRMYRRDA GFHILITSYQ
0701: LLVTDEKYFR RVKWQYMVLD EAQAIKSSSS IRWKTLLSFN CRNRLLLTGT PIQNNMAELW ALLHFIMPML FDNHDQFNEW FSKGIENHAE HGGTLNEHQL
0801: NRLHAILKPF MLRRVKKDVV SELTTKTEVT VHCKLSSRQQ AFYQAIKNKI SLAELFDSNR GQFTDKKVLN LMNIVIQLRK VCNHPELFER NEGSSYLYFG
0901: VTSNSLLPHP FGELEDVHYS GGQNPIIYKI PKLLHQEVLQ NSETFCSSVG RGISRESFLK HFNIYSPEYI LKSIFPSDSG VDQVVSGSGA FGFSRLMDLS
1001: PSEVGYLALC SVAERLLFSI LRWERQFLDE LVNSLMESKD GDLSDNNIER VKTKAVTRML LMPSKVETNF QKRRLSTGPT RPSFEALVIS HQDRFLSSIK
1101: LLHSAYTYIP KARAPPVSIH CSDRNSAYRV TEELHQPWLK RLLIGFARTS EANGPRKPNS FPHPLIQEID SELPVVQPAL QLTHRIFGSC PPMQSFDPAK
1201: LLTDSGKLQT LDILLKRLRA GNHRVLLFAQ MTKMLNILED YMNYRKYKYL RLDGSSTIMD RRDMVRDFQH RSDIFVFLLS TRAGGLGINL TAADTVIFYE
1301: SDWNPTLDLQ AMDRAHRLGQ TKDVTVYRLI CKETVEEKIL HRASQKNTVQ QLVMTGGHVQ GDDFLGAADV VSLLMDDAEA AQLEQKFREL PLQVKDRQKK
1401: KTKRIRIDAE GDATLEELED VDRQDNGQEP LEEPEKPKSS NKKRRAASNP KARAPQKAKE EANGEDTPQR TKRVKRQTKS INESLEPVFS ASVTESNKGF
1501: DPSSSAN
Arabidopsis Description
INO80DNA helicase INO80-like protein [Source:UniProtKB/TrEMBL;Acc:F4J277]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.