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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
GSMUA_Achr6P02430_001 Banana cytosol 20.1 59.36
KRH02187 Soybean nucleus 29.92 57.7
CDY14410 Canola nucleus 38.17 40.67
HORVU7Hr1G041450.33 Barley nucleus 35.66 38.01
CDY07678 Canola nucleus 38.28 37.15
Solyc01g079690.2.1 Tomato nucleus 12.86 34.47
Solyc01g090650.1.1 Tomato cytosol, nucleus, plastid 7.91 34.42
Bra000114.1-P Field mustard nucleus 39.07 31.82
Solyc02g062780.2.1 Tomato cytosol 9.15 31.65
KRH50934 Soybean nucleus 44.66 31.43
Solyc02g085390.2.1 Tomato cytosol 9.37 30.83
AT2G28290.5 Thale cress nucleus 39.48 29.45
TraesCS7D01G206700.2 Wheat nucleus 36.97 29.28
TraesCS7B01G110600.1 Wheat nucleus 37.01 29.18
TraesCS7A01G203600.1 Wheat nucleus 37.05 29.14
Solyc06g054560.2.1 Tomato nucleus 11.47 28.84
Solyc01g067390.2.1 Tomato nucleus 11.29 28.26
Solyc02g014770.2.1 Tomato nucleus 7.76 28.05
Solyc08g029120.1.1 Tomato nucleus 7.42 28.05
Zm00001d037346_P007 Maize nucleus 36.41 25.48
OQU76185 Sorghum nucleus 38.32 25.25
VIT_05s0020g02020.t01 Wine grape nucleus 20.51 20.46
Solyc06g065730.2.1 Tomato nucleus 10.42 19.35
Solyc12g099910.1.1 Tomato nucleus 12.19 19.04
Solyc04g016370.2.1 Tomato nucleus 10.39 18.0
Solyc01g094800.2.1 Tomato nucleus 14.92 17.8
Solyc03g063220.1.1 Tomato nucleus 9.94 16.48
Solyc02g068560.2.1 Tomato nucleus 12.26 13.72
Protein Annotations
MapMan:12.4.1.1.3Gene3D:3.40.50.10810Gene3D:3.40.50.300ncoils:CoilGO:GO:0000166GO:GO:0003674
GO:GO:0005488GO:GO:0005515GO:GO:0005524GO:GO:0042393InterPro:HSA_domInterPro:Helicase_ATP-bd
InterPro:Helicase_CInterPro:IPR001650InterPro:IPR014001InterPro:IPR014012InterPro:IPR038718UniProt:K4D913
InterPro:P-loop_NTPasePFAM:PF00176PFAM:PF00271PFAM:PF14619PFscan:PS51192PFscan:PS51194
PFscan:PS51204PANTHER:PTHR10799PANTHER:PTHR10799:SF926SMART:SM00487SMART:SM00490SMART:SM01314
InterPro:SNF2-like_sfInterPro:SNF2_NSUPFAM:SSF52540InterPro:SnACEnsemblPlantsGene:Solyc11g062010.1EnsemblPlants:Solyc11g062010.1.1
UniParc:UPI00027693C7SEG:seg::::
Description
No Description!
Coordinates
chr11:+:48754803..48783488
Molecular Weight (calculated)
291671.0 Da
IEP (calculated)
5.878
GRAVY (calculated)
-0.624
Length
2667 amino acids
Sequence
(BLAST)
0001: MTNPNNVELE AAKFLHKLIQ ESKDEPTKLA TKLYVILQHM RSSGKESSMP YQVISRAMET VVKQHGLDIE ALMSSRLPVS AVAQAGEAAS SQVAGSSQRP
0101: GVTRDSKANF LGNEMGSGPS GSGHGVYQAS APHISGTGVK VPVMASPASN SSQPLEAGIS SPMQFGSPSI DNHGYAAKLH KDGSTEPYSG PTSADLVAGR
0201: TAVGRAIEHE GGSNMLGNAG KISQGGMPNN VPEKSILRSE TIRDAGMLSV AAQAPVSTMP FKEHHLKQLR AQCLVFLAFR NGLMPKKLHL EIALGNFYPK
0301: EDRRELVDHK GREQLVTDQG SASEVTRTFG GAGETDRISS GPTPSGILTD TNSSMEAENA NLMEDKNGQL DPSEHADERR PQRKMRMIQD AEMPIQDAIE
0401: SQASALRGVP TDPKSFPPYN HENAPANTEQ LGMFPQASSV MGTSKQMKPD LSSRSGTEAS KVSPTASANT HGSGLLMRDN HTGQSQNLVD SNAQGNRHAD
0501: SNLPSLPLRQ QWKSVPGVIN QSPTMMQVKD SNITLKNLSQ VQETDQEDDN ISASTDRLSS PRHTMLEKWI LDQRKRKLIS EQKWSKKQQK TEERIAASAE
0601: KLKESVSSSE DISAKTKSVI ELKKLQLLEL QRRLRSEILY DFFKPVATDM ERLKSIKKHR IGRKSKQFER YEQRMKEERQ KRFRERQKEF FSEIEVHRER
0701: LEDVFKMKRE RWKGFNKYAK EFHKRKERIH REKIDRIQRE KINLLKINDV EGYLRMVQDA KSDRVNKLLK ETEKYLQKLG SKLKEAKSIA RKFETDVGDN
0801: RNSGVVEEDE IDFGDEDETD QAKHYLESNE KYYLMAHSVK ETITEQPSSL KGGKLRGYQM NGLRWLVSLY NNHLNGILAD EMGLGKTVQV ISLMCYLMET
0901: KNDRGPFLVV VPSSVLPGWE SEINFWAPDM LKIVYSGPPE ERRKLFKERI VHQKFNVLLT TYEYLMNKHD RPKLSKVHWH YIIIDEGHRI KNASCKLNAD
1001: LKHYRSNHRL LLTGTPLQNN LEELWALLNF LLPNIFNSSE DFSQWFNKPF ESGDSSPDEA LLSEEENLLI INRLHQVLRP FVLRRLKHKV ENELPSKIER
1101: LVRCEASSYQ KLLMKRVEDN LGAFGTSKAR SVHNSVMELR NICNHPYLSQ LHVEEVHELV PKHYLPTFVR ICGKLEMLDR LLPKLKATDH RVLLFSTMTR
1201: LLDVMEDYLC WKQYKYLRLD GHTCGGDRGA LIDKFNQPNS PFFIFLLSIR AGGVGVNLQA ADTVIIFDTD WNPQVDLQAQ ARAHRIGQKK DVLVLRLETV
1301: QTVEEQVRAA AEHKLGVANQ SITAGFFDNN TSAEDRREYL ESLLRESKKE EAAPVLDDDS LNDLIARSEP EIDIFESVDR RRREEEMEIW KKLCLESGTQ
1401: SSELIPPLPS RLLTDDDLKP FYEAMKISDK PVVAPSPGLK RKGQSLGGLD IQHYGRGKRA REVRSYEEQW TEEEFEKMCL AESPQSPSLK EEIQEKNSPS
1501: VSGNCPDPVV ANSELQTRAQ YQPPLQHPVQ ELPQQHIGPI IQQSPVTVTP PSKRGRGRPR RTAIVAEISP SPVVISAIAA SVKVDSNTIA ENTSTSQAIS
1601: GPVSVSFPCA SSIESTSATI LQNVTVVAPS HQSIAPSLAV VSQSGPPCPP TSGQGRGRGR GRGRGRGRKP QTGGEAPGRR GKQQNVTAEA FPAPPTQAVS
1701: EPVSAAQGVS VMSSTHHMPA TPPAVGEPDV PQVVAGLGSK NLGHAPVSMR DASKELNSVV PLATSSSSKD LTPVSTVSVV PSSAASQDPS SISPPGVLQS
1801: SSRNHSDHLS LSAAQTEATL QVNPISVVPH SSPSAGKETS SVSPVPLHSL TSKDSDSVLP SLVPESSSAR VELSSDFPLP AVAPSSSIGH DSLCDSSNLK
1901: STCQQESGAV TAHTSDPVPP LPVISSVSQY STPPTALKPG RGRGRKAQTG SEAPRRRGKR QDLDTAAVTE GLSVQDPKLI EPPQKRTRLS VGRKPTTRSK
2001: RENESQQVVD QSVASQKTPD FADGEIPKNM VSSEVNPHNS AINRDESQSH AIPVPSQMND NLNGDVATAE EDLDDAQQKE NVVQSVTSQS CSSPHVEPQI
2101: NTVNTDNSPS QEQTAIVQSD ASQKIPYPGT GQIPQAMACS EVELHRNAIK SDISQSSGDV ASCEVAATKE VLSEDQQTMK VQSAASQTPS VHSVGKIPED
2201: IGEVATTKEV LTEDQQTMEV QSPASQTRSV HSVGKMPEDI VSNEVLPQCD AIQTDASQSH VTLASSGSMA PVIDCPVEKS ESDSKGDDGE KTETNSIDGS
2301: NMEVPVGALE LTSSDDLNKS GDAEGKTSSS LSGVLPTSSE LVPRPSANTE LKTEDCPLDK SFVSKAEGGS TEHLAGGILG KEQETGVTME ETVVSPAVET
2401: DNLNMKGITS FASSSTVAES LVDEPPVCGS YEQGEDKLEK AAEGTHSDKG AMAEVSEQDK LSVNVSLETT KGLSRVEKEK YRIPETFEKQ VNVAESLTEE
2501: CGKDLAAHGP EMKDSDVSEV APSPRNESQS SFTVGTSQSE PELQAIAEAN LHPSISETSP STESGAQKES LSPRLASNAE TVEALTETFA SRHDTNYVAD
2601: LQGARAADNG AESQLVAERD SETVLNKEVF SGKEEISSIK LAGDEDVPTA IEYGDQELSS ATGAGDD
Best Arabidopsis Sequence Match ( AT2G28290.2 )
(BLAST)
0001: MTSSSHNIEL EAAKFLHKLI QDSKDEPAKL ATKLYVILQH MKTSGKENTM PYQVISRAMD TVVNQHGLDI EALKSSCLPH PGGTQTEDSG SAHLAGSSQA
0101: VGVSNEGKAT LVENEMTKYD AFTSGRQLGG SNSASQTFYQ GSGTQSNRSF DRESPSNLDS TSGISQPHNR SETMNQRDVK SSGKRKRGES SLSWDQNMDN
0201: SQIFDSHKID DQTGEVSKIE MPGNSGDIRN LHVGLSSDAF TTPQCGWQSS EATAIRPAIH KEPGNNVAGE GFLPSGSPFR EQQLKQLRAQ CLVFLALRNG
0301: LVPKKLHVEI ALRNTFREED GFRGELFDPK GRTHTSSDLG GIPDVSALLS RTDNPTGRLD EMDFSSKETE RSRLGEKSFA NTVFSDGQKL LASRIPSSQA
0401: QTQVAVSHSQ LTFSPGLTKN TPSEMVGWTG VIKTNDLSTS AVQLDEFHSS DEEEGNLQPS PKYTMSQKWI MGRQNKRLLV DRSWSLKQQK ADQAIGSRFN
0501: ELKESVSLSD DISAKTKSVI ELKKLQLLNL QRRLRSEFVY NFFKPIATDV EHLKSYKKHK HGRRIKQLEK YEQKMKEERQ RRIRERQKEF FGGLEVHKEK
0601: LEDLFKVRRE RLKGFNRYAK EFHKRKERLH REKIDKIQRE KINLLKINDV EGYLRMVQDA KSDRVKQLLK ETEKYLQKLG SKLKEAKLLT SRFENEADET
0701: RTSNATDDET LIENEDESDQ AKHYLESNEK YYLMAHSIKE NINEQPSSLV GGKLREYQMN GLRWLVSLYN NHLNGILADE MGLGKTVQVI SLICYLMETK
0801: NDRGPFLVVV PSSVLPGWQS EINFWAPSIH KIVYCGTPDE RRKLFKEQIV HQKFNVLLTT YEYLMNKHDR PKLSKIHWHY IIIDEGHRIK NASCKLNADL
0901: KHYVSSHRLL LTGTPLQNNL EELWALLNFL LPNIFNSSED FSQWFNKPFQ SNGESSAEEA LLSEEENLLI INRLHQVLRP FVLRRLKHKV ENELPEKIER
1001: LIRCEASAYQ KLLMKRVEDN LGSIGNAKSR AVHNSVMELR NICNHPYLSQ LHSEEVNNII PKHFLPPIVR LCGKLEMLDR MLPKLKATDH RVLFFSTMTR
1101: LLDVMEDYLT LKGYKYLRLD GQTSGGDRGA LIDGFNKSGS PFFIFLLSIR AGGVGVNLQA ADTVILFDTD WNPQVDLQAQ ARAHRIGQKK DVLVLRFETV
1201: NSVEEQVRAS AEHKLGVANQ SITAGFFDNN TSAEDRKEYL ESLLRESKKE EDAPVLDDDA LNDLIARRES EIDIFESIDK QRKENEMETW NTLVHGPGSD
1301: SFAHIPSIPS RLVTEDDLKL LYETMKLNDV PMVAKESTVG MKRKDGSMGG LDTHQYGRGK RAREVRSYEE KLTEEEFEKL CQTESPDSPQ GKGEGSERSL
1401: ANDTSNIPVE NSSDTLLPTS PTQAITVQPM EPVRPQSHTL KEETQPIKRG RGRPKRTDKA LTPVSLSAVS RTQATGNAIS SAATGLDFVS SDKRLEAASH
1501: PTSSLALTSP DLSGPPGFQS LPASPAPTPI RGRGRGRSRG RGAGRGRRVE GVLHGSNSSI TQRTETATSL ASDAEATKFA LPRSASEIVS RVPKANEGST
1601: SNPDQVSPVH SATTALRSDK AADKDLDAPP GFDSGSHVQT LNVLENSSER KAFAVKKRPL IQGVSSQHPG PNKQPLDLPV STSSTLLGGG PVQNQNAVSS
1701: VCDGSKSPSE GRTYTALQGV TTAPSDATLP MSSQPSDATL PMSSQPVGST VEAQEANVPS LPAALPAKRR VRNLPSRGET PKRQGKRRGQ PLPATDASSA
1801: RSTGLTPQIE VKVGNLSGTK AKFDAVAKEQ PHFSQSVAPD IHSSGSLSQE IRRDTSGTGG SARKQTADVT DVARVMKEIF SETSLLKHKV GEPSATTRTN
1901: VPDAQSPGEM NLHTVETHKA EDSSGLKNQE ALYNLSKADK LVSDIPHPVP GDLTTSGSVA NKDVDIGSSK VAAENELVKI PGGDVDSSVI QLSLGNTLTA
2001: KSSLEKCTAD QLLGEKLSQE GETTPASDGE TCHLAEETAS SLSYVRSEPT ASASTTAEPL PTDKLEKNIS FQDEVKTLNG DKREAILLSS EEQTNVNSKI
2101: ETNSEELQAS RTDEVPHVDG KSVDVANQTV KEDEAKHSVE IQSSMLEPDE LPNAGQKGHS SIDLQPLVLV TSNENAMSLD DKDYDPISKS ADIEQDPEES
2201: VFVQGVGRPK VGTADTQMED TNDAKLLVGC SVESEEKEKT LQSLIPGDDA DTEQDPEESV SDQRPKVGSA YTQMEDTDEA KLLMGCSVES EEKEKTLQSH
2301: IPGDDADTEK NPEESVSVQG VDRPKVGTTD TQMEDTNDAK LLVGCSVASE EKEKTLQSHI PGDDADTEQN PEESVSVQGV NRPKVGNANT QMEDTDEAKV
2401: LVGCSVESEE KEKTLQSHIP GDDADTEQNP EESVSNFDRP KDGTADTHME DIDDAKLLVG CSVESEEKEK SLQSHMPSDD AVLHAPFENT KDSKGDDLHG
2501: ESLVSCPTME VMEQKGFESE THARTDSGGI DRGNEVSENM SDGVKMNISS VQVPDASHDL NVSQDQTDIP LVGGIDPEHV QENVDVPASP HGAAPNIVIF
2601: QSEGHLSPSI LPDDVAGQLE SMSNDEKTNI SSEQVPDVSH DLKVSQDQTD IPPVGGIVPE NLQEIVDVPA SPHGVVPDVV VSQSEEIQSP SILPDDVPGQ
2701: PDDGNCEKMD TMQNNTSIDI GITSGKTCQP SSSTQPEDEN RNSLSHCEPS EVVEQRDSRD QVCIGSVESQ VEISSAILEN RSADIQPPQS ILVDQKDIEE
2801: SKEPGIESAD VSLHQLADIQ AEPSNLVDQM DIEESKEPGT ESADVSLHQL ADIQPGPSIL VDQMDTEKSK EPGTESADVS LHQLADIQPG PSILVDQMDT
2901: EKSKEPGTES ADVSLHQLAD IQPGPSILVD QMDTEEFKNP DVSLHQLADI EPSLSISAVQ KNIEDKDQSH VETAGSELVD VSAECSTEPQ VQLPPSSEPV
3001: GDMHVHLGAS KSEIVAEGTD FSSSLPKTEE ENAKSQLADT EPSSSLTAVQ KNIEDQVETA GCEFVVVSTG CSTEPQVQLP PSAEPVVAEG TEFPSSLLMT
3101: GVDNSSHLMT GVDNAKTHLA DVVPSSSPTT MEKNIEAQDQ DQVTTGGCGL VDVLTECSSE PQLQLPPSAE PVISEGTELA TLPLTEEENA DSQLANIEPS
3201: SSPSVVEKNI EAQDQDQVKT AGCELVSTGC SSEPQVHLPP SAEPDGDIHV HLKETEKSES MVVVGEGTAF PSSLPVTEEG NAESQLADTE PFTSPTVVEK
3301: NIKDQEQVET TGCGLVDDST GCSSEPQVQL PPSAEPMEGG CDLINVPSGC STEPQIQLSS SAEPEEGMHI HLEAAMNSET VVTEGSELPS SLPMTEDENA
3401: DGQLAEVEPS VSLTVEQTNI EEKDHIETAE CELVDVSPGC SSQPEVKFPP SPDAVGGMDV HLETVVTEDT DSNSSLPKTE EKDAENPSDR LDGESDGTTV
3501: ATVEGTCVES NSLVAEESNI EVPKDNEDV
Arabidopsis Description
SYDP-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8B2X1]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.