Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400079102 | Potato | nucleus | 98.11 | 98.39 |
| CDY47176 | Canola | cytosol | 40.06 | 89.66 |
| Solyc01g067390.2.1 | Tomato | nucleus | 87.94 | 87.61 |
| KRH21031 | Soybean | nucleus | 87.56 | 87.07 |
| VIT_05s0020g01780.t01 | Wine grape | nucleus | 88.31 | 86.76 |
| KRH11241 | Soybean | nucleus | 87.56 | 86.66 |
| KRH50913 | Soybean | nucleus | 86.05 | 86.29 |
| KRH02212 | Soybean | nucleus | 85.77 | 85.93 |
| AT3G06400.3 | Thale cress | nucleus | 84.26 | 84.58 |
| Bra040221.1-P | Field mustard | nucleus | 83.6 | 84.56 |
| CDY18857 | Canola | nucleus | 83.51 | 84.46 |
| AT5G18620.2 | Thale cress | nucleus | 84.54 | 83.68 |
| CDY24695 | Canola | nucleus | 82.47 | 83.1 |
| Bra020751.1-P | Field mustard | nucleus | 82.38 | 83.0 |
| CDX92595 | Canola | nucleus | 69.46 | 82.44 |
| CDY13907 | Canola | nucleus | 82.19 | 82.34 |
| GSMUA_Achr8P09960_001 | Banana | nucleus | 83.69 | 82.15 |
| Bra002173.1-P | Field mustard | nucleus | 82.19 | 81.95 |
| GSMUA_Achr3P23910_001 | Banana | nucleus | 81.62 | 81.01 |
| KXG32501 | Sorghum | nucleus | 83.32 | 79.86 |
| Os01t0367900-01 | Rice | nucleus | 83.13 | 79.67 |
| Zm00001d040831_P021 | Maize | nucleus | 82.94 | 78.57 |
| Zm00001d009312_P028 | Maize | nucleus | 83.51 | 78.41 |
| CDY02609 | Canola | nucleus | 77.95 | 78.39 |
| TraesCS1D01G099600.1 | Wheat | nucleus | 81.62 | 78.23 |
| TraesCS1B01G118900.2 | Wheat | nucleus | 81.53 | 78.21 |
| TraesCS1A01G091100.1 | Wheat | nucleus | 81.15 | 77.85 |
| CDY05261 | Canola | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 82.85 | 77.58 |
| Bra023689.1-P | Field mustard | nucleus | 80.4 | 77.47 |
| Os05t0150300-01 | Rice | nucleus | 81.53 | 74.7 |
| TraesCS3D01G068900.1 | Wheat | nucleus | 77.66 | 73.51 |
| HORVU1Hr1G021540.17 | Barley | plasma membrane | 81.43 | 73.16 |
| TraesCS3B01G083400.1 | Wheat | nucleus | 77.95 | 72.93 |
| TraesCS3A01G069900.2 | Wheat | nucleus | 77.38 | 72.65 |
| HORVU3Hr1G012850.1 | Barley | nucleus | 76.15 | 71.32 |
| Solyc02g062780.2.1 | Tomato | cytosol | 26.01 | 35.8 |
| Solyc01g090650.1.1 | Tomato | cytosol, nucleus, plastid | 20.26 | 35.07 |
| Solyc02g085390.2.1 | Tomato | cytosol | 25.26 | 33.05 |
| Solyc01g079690.2.1 | Tomato | nucleus | 27.43 | 29.25 |
| Solyc08g029120.1.1 | Tomato | nucleus | 18.94 | 28.47 |
| Solyc02g014770.2.1 | Tomato | nucleus | 18.47 | 26.56 |
| Solyc12g099910.1.1 | Tomato | nucleus | 33.36 | 20.74 |
| Solyc06g065730.2.1 | Tomato | nucleus | 25.73 | 19.0 |
| Solyc04g016370.2.1 | Tomato | nucleus | 23.66 | 16.31 |
| Solyc03g063220.1.1 | Tomato | nucleus | 24.6 | 16.23 |
| Solyc01g094800.2.1 | Tomato | nucleus | 26.01 | 12.34 |
| Solyc02g068560.2.1 | Tomato | nucleus | 26.77 | 11.92 |
| Solyc11g062010.1.1 | Tomato | nucleus | 28.84 | 11.47 |
Protein Annotations
Description
No Description!
Coordinates
chr6:+:37301837..37311188
Molecular Weight (calculated)
123497.0 Da
IEP (calculated)
5.768
GRAVY (calculated)
-0.828
Length
1061 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGKPSRDRSS SEESVSESSE EEQVRGQVND DEDEEELQAV ARAAEDSDEE EDDDAPSDGA DQEDEDNEEG VAVNEISKRE KARLKEMQRM KKQKIQDMLD
0101: SQNAAIEADM NVKGQGRLKY LLQQTELFAH FAKGEQSTAP KKTKGRGRHA SKVTEEEEDE EYLKDEDELS GNTRLVAQPS CIQGKMRDYQ LAGLNWLIRL
0201: YENGINGILA DEMGLGKTLQ TISLMGYLHE FRGITGPHMV VAPKSTLGNW MNEIKRFCPV LRAVKFLGNP DERRYIREEL LVAGKFDVCV TSFEMVIKEK
0301: SALRRFSWRY IIIDEAHRIK NENSLLSKTM RLYNTNYRLL ITGTPLQNNL HELWALLNFL LPEIFSSAET FDEWFQISGE TDQQEVVQQL HKVLRPFLLR
0401: RLKSDVEKGL PPKKETILKV GMSQMQKQYY KALLQKDLEV VNSGGERKRL LNIAMQLRKC CNHPYLFQGA EPGPPYTTGE HLVENAGKMV LLDKLLPKLK
0501: ERGSRVLIFS QMTRLLDILE DYLLFRGHQY CRIDGNTGGE DRDASIEAFN KPGSEKFAFL LSTRAGGLGI NLATADIVIL YDSDWNPQVD LQAQDRAHRI
0601: GQKKEVQVFR FCTEYTIEEK VIERAYKKLA LDALVIQQGR LAEQKTVNKD ELLQMVRFGA EMVFSAKDST ITDEDIDRII AKGEEATAEL DAKMKKFTED
0701: AIKFKMDDTA ELYDFDDEKE ENKVDFKKIV SDNWIEPPKR ERKRNYSESE YFKQTMRQSA PARPREPRIP RMPQLHDFQF FNTQRLSELY EKEVRYLMTH
0801: QKNQVKDTIE MEESEDAGEP LTAEEQEEKE QLLEEGFSMW SRRDFNTFIR ACEKYGRDDL KSIAAEMEGK TEEEVERYAY VFKERYKELN DYDRIIKNIE
0901: RGEARISRRD EIMKAIGKKL DRYKNPWLEL KIQYGQNKGK LYNEECDRFM ICMVHKLGHG NWDELKAAFR QSTLFKFDWF VKSRTTQELA RRCDALIRLI
1001: ERENQEYDER ERQARKEKKH AKNTTPSKRT LARQAAESPS ALKKRKQLSM DDYVSSGKRR K
0101: SQNAAIEADM NVKGQGRLKY LLQQTELFAH FAKGEQSTAP KKTKGRGRHA SKVTEEEEDE EYLKDEDELS GNTRLVAQPS CIQGKMRDYQ LAGLNWLIRL
0201: YENGINGILA DEMGLGKTLQ TISLMGYLHE FRGITGPHMV VAPKSTLGNW MNEIKRFCPV LRAVKFLGNP DERRYIREEL LVAGKFDVCV TSFEMVIKEK
0301: SALRRFSWRY IIIDEAHRIK NENSLLSKTM RLYNTNYRLL ITGTPLQNNL HELWALLNFL LPEIFSSAET FDEWFQISGE TDQQEVVQQL HKVLRPFLLR
0401: RLKSDVEKGL PPKKETILKV GMSQMQKQYY KALLQKDLEV VNSGGERKRL LNIAMQLRKC CNHPYLFQGA EPGPPYTTGE HLVENAGKMV LLDKLLPKLK
0501: ERGSRVLIFS QMTRLLDILE DYLLFRGHQY CRIDGNTGGE DRDASIEAFN KPGSEKFAFL LSTRAGGLGI NLATADIVIL YDSDWNPQVD LQAQDRAHRI
0601: GQKKEVQVFR FCTEYTIEEK VIERAYKKLA LDALVIQQGR LAEQKTVNKD ELLQMVRFGA EMVFSAKDST ITDEDIDRII AKGEEATAEL DAKMKKFTED
0701: AIKFKMDDTA ELYDFDDEKE ENKVDFKKIV SDNWIEPPKR ERKRNYSESE YFKQTMRQSA PARPREPRIP RMPQLHDFQF FNTQRLSELY EKEVRYLMTH
0801: QKNQVKDTIE MEESEDAGEP LTAEEQEEKE QLLEEGFSMW SRRDFNTFIR ACEKYGRDDL KSIAAEMEGK TEEEVERYAY VFKERYKELN DYDRIIKNIE
0901: RGEARISRRD EIMKAIGKKL DRYKNPWLEL KIQYGQNKGK LYNEECDRFM ICMVHKLGHG NWDELKAAFR QSTLFKFDWF VKSRTTQELA RRCDALIRLI
1001: ERENQEYDER ERQARKEKKH AKNTTPSKRT LARQAAESPS ALKKRKQLSM DDYVSSGKRR K
0001: MARNSNSDEA FSSEEEEERV KDNEEEDEEE LEAVARSSGS DDDEVAAADE SPVSDGEAAP VEDDYEDEED EEKAEISKRE KARLKEMQKL KKQKIQEMLE
0101: SQNASIDADM NNKGKGRLKY LLQQTELFAH FAKSDGSSSQ KKAKGRGRHA SKITEEEEDE EYLKEEEDGL TGSGNTRLLT QPSCIQGKMR DYQLAGLNWL
0201: IRLYENGING ILADEMGLGK TLQTISLLAY LHEYRGINGP HMVVAPKSTL GNWMNEIRRF CPVLRAVKFL GNPEERRHIR EDLLVAGKFD ICVTSFEMAI
0301: KEKTALRRFS WRYIIIDEAH RIKNENSLLS KTMRLFSTNY RLLITGTPLQ NNLHELWALL NFLLPEIFSS AETFDEWFQI SGENDQQEVV QQLHKVLRPF
0401: LLRRLKSDVE KGLPPKKETI LKVGMSQMQK QYYKALLQKD LEAVNAGGER KRLLNIAMQL RKCCNHPYLF QGAEPGPPYT TGDHLITNAG KMVLLDKLLP
0501: KLKERDSRVL IFSQMTRLLD ILEDYLMYRG YLYCRIDGNT GGDERDASIE AYNKPGSEKF VFLLSTRAGG LGINLATADV VILYDSDWNP QVDLQAQDRA
0601: HRIGQKKEVQ VFRFCTESAI EEKVIERAYK KLALDALVIQ QGRLAEQKTV NKDELLQMVR YGAEMVFSSK DSTITDEDID RIIAKGEEAT AELDAKMKKF
0701: TEDAIQFKMD DSADFYDFDD DNKDENKLDF KKIVSDNWND PPKRERKRNY SESEYFKQTL RQGAPAKPKE PRIPRMPQLH DFQFFNIQRL TELYEKEVRY
0801: LMQTHQKNQL KDTIDVEEPE EGGDPLTTEE VEEKEGLLEE GFSTWSRRDF NTFLRACEKY GRNDIKSIAS EMEGKTEEEV ERYAKVFKER YKELNDYDRI
0901: IKNIERGEAR ISRKDEIMKA IGKKLDRYRN PWLELKIQYG QNKGKLYNEE CDRFMICMIH KLGYGNWDEL KAAFRTSSVF RFDWFVKSRT SQELARRCDT
1001: LIRLIEKENQ EFDERERQAR KEKKLAKSAT PSKRPLGRQA SESPSSTKKR KHLSMR
0101: SQNASIDADM NNKGKGRLKY LLQQTELFAH FAKSDGSSSQ KKAKGRGRHA SKITEEEEDE EYLKEEEDGL TGSGNTRLLT QPSCIQGKMR DYQLAGLNWL
0201: IRLYENGING ILADEMGLGK TLQTISLLAY LHEYRGINGP HMVVAPKSTL GNWMNEIRRF CPVLRAVKFL GNPEERRHIR EDLLVAGKFD ICVTSFEMAI
0301: KEKTALRRFS WRYIIIDEAH RIKNENSLLS KTMRLFSTNY RLLITGTPLQ NNLHELWALL NFLLPEIFSS AETFDEWFQI SGENDQQEVV QQLHKVLRPF
0401: LLRRLKSDVE KGLPPKKETI LKVGMSQMQK QYYKALLQKD LEAVNAGGER KRLLNIAMQL RKCCNHPYLF QGAEPGPPYT TGDHLITNAG KMVLLDKLLP
0501: KLKERDSRVL IFSQMTRLLD ILEDYLMYRG YLYCRIDGNT GGDERDASIE AYNKPGSEKF VFLLSTRAGG LGINLATADV VILYDSDWNP QVDLQAQDRA
0601: HRIGQKKEVQ VFRFCTESAI EEKVIERAYK KLALDALVIQ QGRLAEQKTV NKDELLQMVR YGAEMVFSSK DSTITDEDID RIIAKGEEAT AELDAKMKKF
0701: TEDAIQFKMD DSADFYDFDD DNKDENKLDF KKIVSDNWND PPKRERKRNY SESEYFKQTL RQGAPAKPKE PRIPRMPQLH DFQFFNIQRL TELYEKEVRY
0801: LMQTHQKNQL KDTIDVEEPE EGGDPLTTEE VEEKEGLLEE GFSTWSRRDF NTFLRACEKY GRNDIKSIAS EMEGKTEEEV ERYAKVFKER YKELNDYDRI
0901: IKNIERGEAR ISRKDEIMKA IGKKLDRYRN PWLELKIQYG QNKGKLYNEE CDRFMICMIH KLGYGNWDEL KAAFRTSSVF RFDWFVKSRT SQELARRCDT
1001: LIRLIEKENQ EFDERERQAR KEKKLAKSAT PSKRPLGRQA SESPSSTKKR KHLSMR
Arabidopsis Description
CHR11Chromatin-remodeling protein 11 [Source:UniProtKB/TrEMBL;Acc:F4JAV9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.