Factsheet for VIT_05s0020g01780.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH21031	Soybean	nucleus	90.74	91.85
KRH11241	Soybean	nucleus	91.11	91.79
CDY47176	Canola	cytosol	39.44	89.87
KRH50913	Soybean	nucleus	87.5	89.32
PGSC0003DMT400079102	Potato	nucleus	86.94	88.75
PGSC0003DMT400058376	Potato	nucleus	87.31	88.63
KRH02212	Soybean	nucleus	86.67	88.39
Solyc06g054560.2.1	Tomato	nucleus	86.76	88.31
Bra040221.1-P	Field mustard	nucleus	85.56	88.08
CDY18857	Canola	nucleus	85.56	88.08
AT3G06400.3	Thale cress	nucleus	86.11	87.98
Solyc01g067390.2.1	Tomato	nucleus	86.67	87.89
AT5G18620.2	Thale cress	nucleus	86.3	86.94
CDY24695	Canola	nucleus	83.61	85.75
Bra020751.1-P	Field mustard	nucleus	83.52	85.66
CDY13907	Canola	nucleus	83.8	85.46
CDX92595	Canola	nucleus	70.65	85.35
GSMUA_Achr8P09960_001	Banana	nucleus	85.37	85.29
Bra002173.1-P	Field mustard	nucleus	83.7	84.96
GSMUA_Achr3P23910_001	Banana	nucleus	83.61	84.47
KXG32501	Sorghum	nucleus	84.44	82.38
Os01t0367900-01	Rice	nucleus	83.8	81.75
Zm00001d040831_P021	Maize	nucleus	83.8	80.8
Zm00001d009312_P028	Maize	nucleus	84.17	80.44
CDY02609	Canola	nucleus	78.24	80.09
CDY05261	Canola	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	83.89	79.96
TraesCS1D01G099600.1	Wheat	nucleus	81.85	79.86
TraesCS1B01G118900.2	Wheat	nucleus	81.67	79.75
Bra023689.1-P	Field mustard	nucleus	81.11	79.56
TraesCS1A01G091100.1	Wheat	nucleus	81.2	79.29
Os05t0150300-01	Rice	nucleus	83.06	77.46
TraesCS3D01G068900.1	Wheat	nucleus	78.06	75.2
HORVU1Hr1G021540.17	Barley	plasma membrane	81.67	74.68
TraesCS3B01G083400.1	Wheat	nucleus	78.24	74.52
TraesCS3A01G069900.2	Wheat	nucleus	77.96	74.51
HORVU3Hr1G012850.1	Barley	nucleus	76.67	73.08
VIT_04s0023g01610.t01	Wine grape	cytosol	26.02	37.02
VIT_05s0020g02960.t01	Wine grape	nucleus	28.89	28.29
VIT_01s0010g02080.t01	Wine grape	cytosol	18.52	27.47
VIT_15s0021g02180.t01	Wine grape	cytosol	21.39	27.02
VIT_06s0009g03750.t01	Wine grape	nucleus	32.87	20.14
VIT_04s0008g05880.t01	Wine grape	nucleus	26.39	19.36
VIT_08s0007g09020.t01	Wine grape	nucleus	23.43	16.25
VIT_08s0007g06370.t01	Wine grape	nucleus	26.02	13.69
VIT_01s0011g01480.t01	Wine grape	nucleus	27.04	13.54
VIT_15s0046g02290.t01	Wine grape	plastid	27.22	12.99
VIT_05s0020g02020.t01	Wine grape	nucleus	27.78	11.22

Protein Annotations

Gene3D:1.10.10.60	Gene3D:1.10.1040.30	EntrezGene:100244281	wikigene:100244281	MapMan:12.4.1.1.4	Gene3D:3.40.50.10810
Gene3D:3.40.50.300	ProteinID:CBI26103	ProteinID:CBI26103.3	ncoils:Coil	UniProt:D7T6I2	InterPro:DBINO
EMBL:FN595749	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003682
GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006325	GO:GO:0006338	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016043	GO:GO:0016569	GO:GO:0016589	GO:GO:0016787	GO:GO:0016818
GO:GO:0016887	GO:GO:0031491	GO:GO:0043044	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:Homeobox-like_sf
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR017884	InterPro:IPR020838	InterPro:IPR036306	InterPro:IPR038718
InterPro:ISWI	InterPro:ISWI_HAND-dom	InterPro:ISWI_HAND-dom_sf	EntrezGene:LOC100244281	wikigene:LOC100244281	InterPro:P-loop_NTPase
PFAM:PF00176	PFAM:PF00271	PFAM:PF09110	PFAM:PF09111	PFAM:PF13892	PFscan:PS51192
PFscan:PS51194	PFscan:PS51293	PANTHER:PTHR10799	PANTHER:PTHR10799:SF887	InterPro:SANT/Myb	InterPro:SANT_dom
InterPro:SLIDE	SMART:SM00487	SMART:SM00490	SMART:SM00717	InterPro:SNF2-like_sf	InterPro:SNF2_N
SUPFAM:SSF101224	SUPFAM:SSF46689	SUPFAM:SSF52540	TIGR:TC70488	UniParc:UPI00019832B0	ArrayExpress:VIT_05s0020g01780
EnsemblPlantsGene:VIT_05s0020g01780	EnsemblPlants:VIT_05s0020g01780.t01	unigene:Vvi.3408	RefSeq:XP_002275787	RefSeq:XP_002275787.1	RefSeq:XP_003631977
RefSeq:XP_003631977.1	SEG:seg	:	:	:	:

Description

Chromatin-remodeling complex ATPase [Source:UniProtKB/TrEMBL;Acc:D7T6I2]

Coordinates

chr5:-:3495084..3504551

Molecular Weight (calculated)

125080.0 Da

IEP (calculated)

5.788

GRAVY (calculated)

-0.818

Length

1080 amino acids

Sequence
(BLAST)

0001: MAKPSKSQVS SDEALSNGSN SSEEEQLNDQ INDEEDEEEL EAVTRTAVSE DEDEEAADGG NSPATEDDAA GDSSDGEEDE EDGNAVGGTE ISKREKARLK
0101: EMQKMKKQKI QEILDAQNAA IDADMNNRGK GRLKYLLQQT EIFAHFAKGD QSTSQKKTKG RGRHASKVTE EEEDEECLKE EEDGLSGTGN TRLVTQPSCI
0201: QGKMRDYQLA GLNWLIRLYE NGINGILADE MGLGKTLQTI SLLGYLHEFR GITGPHMVVA PKSTLGNWMN EIRRFCPVLR AVKFLGNPDE RRHIRDNLLV
0301: AGKFDVCVTS FEMAIKEKTT LRRFSWRYII IDEAHRIKNE NSLLSKTMRL YSTNYRLLIT GTPLQNNLHE LWSLLNFLLP EIFNSAETFD EWFQISGDND
0401: QQEVVQQLHK VLRPFLLRRL KSDVEKGLPP KKETILKVGM SQLQKQFYRA LLQKDLEVVN AGGERKRLLN IAMQLRKCCN HPYLFQGAEP GPPYTTGEHL
0501: ITNSGKMVLL DKLLPKLKER DSRVLIFSQM TRLLDILEDY LMFRGYLYCR IDGNTGGEDR DASIDAFNKP GSEKFVFLLS TRAGGLGINL ATADVVILYD
0601: SDWNPQVDLQ AQDRAHRIGQ KKEVQVFRFC TEYTIEEKVI ERAYKKLALD ALVIQQGRLA EQKTVNKDEL LQMVRFGAEM VFSSKDSTIT DEDIDRIIAK
0701: GEEATAELDA KMKKFTEDAI KFKMDDTAEL YDFDDEKDEN KFDFKKIVSE NWIEPPKRER KRNYSESEYF KQTMRQGAPA KQREPRIPRM PQLHDFQFFN
0801: TQRLNELYEK EVRYLMQTHQ KNQLKDSIDV DEPEDLGDPL TAEEQEEKER LLEEGFSSWS RRDFNTFIRA CEKYGRNDVK SIASEMEGKT EEEVERYAKA
0901: FKERYKELND YDRIIKNIER GEARISRKDE IMKAIGKKLD RYKNPWLELK IQYGQNKGKL YNEECDRFMI CMVHKLGYGN WDELKAAFRT SPLFRFDWFV
1001: KSRTTQELAR RCDTLIRLVE RENQEFDERE RQARKEKKLA KNMTPSKRAM ARQATESPTS VKKRKQLLMD DYVSSGKRRK

Best Arabidopsis Sequence Match ( AT5G18620.2 )
(BLAST)

0001: MARASKREVS SDEAYSSEEE EQVNDQANVE EDDDELEAVA RSAGSDEEDV APDEAPVSDD EVVPVEDDAE EDEEDEEKAE ISKREKARLK EMQKMKKQKI
0101: QQILDSQNAS IDADMNNKGK GRIKYLLQQT ELFAHFAKSD PSPSQKKGKG RGRHSSKLTE EEEDEECLKE EEGGIVGSGG TRLLTQPACI QGKLRDYQLA
0201: GLNWLIRLYE NGINGILADE MGLGKTLQTI SLLAYLHEYR GINGPHMVVA PKSTLGNWMN EIRRFCPVLR AVKFLGNPEE RRHIREELLV AGKFDICVTS
0301: FEMAIKEKTT LRRFSWRYII IDEAHRIKNE NSLLSKTMRL FSTNYRLLIT GTPLQNNLHE LWALLNFLLP EVFSSAETFD EWFQISGEND QQEVVQQLHK
0401: VLRPFLLRRL KSDVEKGLPP KKETILKVGM SQMQKQYYKA LLQKDLEVVN GGGERKRLLN IAMQLRKCCN HPYLFQGAEP GPPYTTGDHL VTNAGKMVLL
0501: DKLLPKLKDR DSRVLIFSQM TRLLDILEDY LMYRGYQYCR IDGNTGGDER DASIEAYNKP GSEKFVFLLS TRAGGLGINL ATADVVILYD SDWNPQVDLQ
0601: AQDRAHRIGQ KKEVQVFRFC TENAIEAKVI ERAYKKLALD ALVIQQGRLA EQKTVNKDEL LQMVRYGAEM VFSSKDSTIT DEDIDRIIAK GEEATAELDA
0701: KMKKFTEDAI QFKMDDSADF YDFDDDNKDE SKVDFKKIVS ENWNDPPKRE RKRNYSEVEY FKQTLRQGAP AKPKEPRIPR MPQLHDFQFF NIQRLTELYE
0801: KEVRYLMQAH QKTQMKDTIE VDEPEEVGDP LTAEEVEEKE LLLEEGFSTW SRRDFNAFIR ACEKYGRNDI KSIASEMEGK TEEEVERYAQ VFQVRYKELN
0901: DYDRIIKNIE RGEARISRKD EIMKAIGKKL DRYRNPWLEL KIQYGQNKGK LYNEECDRFM ICMVHKLGYG NWDELKAAFR TSPLFRFDWF VKSRTTQELA
1001: RRCDTLIRLI EKENQEFDER ERQARKEKKL SKSATPSKRP SGRQANESPS SLLKKRKQLS MDDYVSSGKR RK

Arabidopsis Description

CHR17Chromatin remodeling factor17 [Source:UniProtKB/TrEMBL;Acc:F4JY25]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.