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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 1
  • plastid 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:cytosol
YLoc:nucleus
 nucleus: 21132161
nucleus: 27291164
nucleus: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27291164 doi
X Yin, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH11241 Soybean nucleus 98.69 98.23
KRH50913 Soybean nucleus 91.1 91.87
KRH02212 Soybean nucleus 90.07 90.75
VIT_05s0020g01780.t01 Wine grape nucleus 91.85 90.74
CDY47176 Canola cytosol 39.74 89.45
PGSC0003DMT400079102 Potato nucleus 87.54 88.28
Bra040221.1-P Field mustard nucleus 86.6 88.08
AT3G06400.3 Thale cress nucleus 87.25 88.08
CDY18857 Canola nucleus 86.5 87.99
PGSC0003DMT400058376 Potato nucleus 87.35 87.59
Solyc06g054560.2.1 Tomato nucleus 87.07 87.56
Solyc01g067390.2.1 Tomato nucleus 86.88 87.04
AT5G18620.2 Thale cress nucleus 86.97 86.57
CDY24695 Canola nucleus 85.1 86.23
Bra020751.1-P Field mustard nucleus 85.0 86.13
GSMUA_Achr8P09960_001 Banana nucleus 85.57 84.46
CDY13907 Canola nucleus 83.79 84.42
Bra002173.1-P Field mustard nucleus 83.79 84.02
CDX92595 Canola nucleus 70.38 84.0
GSMUA_Achr3P23910_001 Banana nucleus 83.69 83.54
KXG32501 Sorghum nucleus 84.72 81.66
Os01t0367900-01 Rice nucleus 83.79 80.76
Zm00001d040831_P021 Maize nucleus 84.54 80.54
CDY05261 Canola endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole 85.38 80.41
CDY02609 Canola nucleus 79.29 80.19
Zm00001d009312_P028 Maize nucleus 84.82 80.09
TraesCS1B01G118900.2 Wheat nucleus 82.57 79.66
TraesCS1D01G099600.1 Wheat nucleus 82.29 79.31
Bra023689.1-P Field mustard nucleus 81.82 79.29
TraesCS1A01G091100.1 Wheat nucleus 81.91 79.02
Os05t0150300-01 Rice nucleus 84.16 77.55
TraesCS3D01G068900.1 Wheat nucleus 79.76 75.91
TraesCS3A01G069900.2 Wheat nucleus 79.94 75.49
TraesCS3B01G083400.1 Wheat nucleus 80.13 75.4
HORVU1Hr1G021540.17 Barley plasma membrane 82.38 74.43
HORVU3Hr1G012850.1 Barley nucleus 77.6 73.08
KRH76800 Soybean cytosol 25.3 35.43
KRH28662 Soybean cytosol 25.21 35.26
KRH35559 Soybean nucleus 27.93 27.8
KRH27613 Soybean nucleus 27.65 27.75
KRG91253 Soybean nucleus 27.74 27.59
KRG89166 Soybean nucleus 19.12 27.13
KRH49484 Soybean nucleus 19.12 27.06
KRH75253 Soybean cytosol, nucleus, plastid 22.02 26.77
KRH05279 Soybean nucleus 9.47 22.3
KRH14560 Soybean nucleus 33.46 20.24
KRH73568 Soybean nucleus 18.37 20.12
KRH52357 Soybean nucleus 26.8 19.86
KRH61691 Soybean nucleus 26.71 19.76
KRH33202 Soybean nucleus 22.68 16.59
KRG95191 Soybean nucleus 23.15 16.13
KRH66858 Soybean nucleus 23.15 16.12
KRH02187 Soybean nucleus 19.96 15.4
KRH71872 Soybean nucleus 28.02 14.65
KRH38118 Soybean nucleus 28.02 14.59
KRH42374 Soybean nucleus 27.55 13.59
KRH48113 Soybean nucleus 27.18 13.03
KRH00799 Soybean nucleus 27.09 13.01
KRH40427 Soybean nucleus 26.9 12.92
KRH06623 Soybean nucleus 26.43 12.8
KRH58495 Soybean nucleus 27.74 12.68
KRH50934 Soybean nucleus 29.43 8.29
Protein Annotations
Gene3D:1.10.10.60Gene3D:1.10.1040.30EntrezGene:100782649MapMan:12.4.1.1.4Gene3D:3.40.50.10810Gene3D:3.40.50.300
EMBL:ACUP02008334ncoils:CoilInterPro:DBINOEnsemblPlantsGene:GLYMA_13G215900GO:GO:0000166GO:GO:0003674
GO:GO:0003676GO:GO:0003677GO:GO:0003682GO:GO:0003824GO:GO:0004386GO:GO:0005488
GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006325
GO:GO:0006338GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016043GO:GO:0016569
GO:GO:0016589GO:GO:0016787GO:GO:0016818GO:GO:0016887GO:GO:0031491GO:GO:0043044
InterPro:Helicase_ATP-bdInterPro:Helicase_CInterPro:Homeobox-like_sfUniProt:I1M1D0InterPro:IPR001650InterPro:IPR014001
InterPro:IPR017884InterPro:IPR020838InterPro:IPR036306InterPro:IPR038718InterPro:ISWIInterPro:ISWI_HAND-dom
InterPro:ISWI_HAND-dom_sfEnsemblPlants:KRH21031ProteinID:KRH21031ProteinID:KRH21031.1InterPro:P-loop_NTPasePFAM:PF00176
PFAM:PF00271PFAM:PF09110PFAM:PF09111PFAM:PF13892PFscan:PS51192PFscan:PS51194
PFscan:PS51293PANTHER:PTHR10799PANTHER:PTHR10799:SF887InterPro:SANT/MybInterPro:SANT_domInterPro:SLIDE
SMART:SM00487SMART:SM00490SMART:SM00717InterPro:SNF2-like_sfInterPro:SNF2_NSUPFAM:SSF101224
SUPFAM:SSF46689SUPFAM:SSF52540UniParc:UPI00023CF16ESEG:seg::
Description
hypothetical protein
Coordinates
chr13:+:32917010..32925572
Molecular Weight (calculated)
123997.0 Da
IEP (calculated)
6.034
GRAVY (calculated)
-0.823
Length
1067 amino acids
Sequence
(BLAST)
0001: MARPSKPHSS SEEALSNASS SSEEEEQVNE QINEEEDEEE LEAVARPASS DDDEVAGDNP PDSDEDPAAD DDQDGDNVNP EISKREKTRL KEMQKMKKQK
0101: ILEILDAQNA AIDADMNNRG KGRLKYLLQQ TELFAHFAKG DQSSSQKKSR GRGRHASNFT EEEEDEEYLK GEEDGLANTR LVTQPSCIQG KMRDYQLAGL
0201: NWLIRLYENG INGILADEMG LGKTLQTISL LGYLHEFRGI KGPHMVVAPK STLGNWMNEI RRFCPILRAI KFLGNPDERR HIRDELLVAG KFDVCVTSFE
0301: MAIKEKSALR RFSWRYIIID EAHRIKNENS LLSKTMRLYS TNYRLLITGT PLQNNLHELW SLLNFLLPEI FSSAETFDEW FQISGENDQQ EVVQQLHKVL
0401: RPFLLRRLKS DVEKGLPPKK ETILKVGMSQ MQKQYYRALL QKDLEVVNAG GERKRLLNIA MQLRKCCNHP YLFQGAEPGP PFTTGDHLIE NAGKMVLLDK
0501: LLPKLKERDS RVLIFSQMTR LLDILEDYLV FRGYQYCRID GNTGGDDRDA SIDAFNKPGS EKFVFLLSTR AGGLGINLAT ADVVILYDSD WNPQVDLQAQ
0601: DRAHRIGQKK EVQVFRFCTE YTIEEKVIER AYKKLALDAL VIQQGRLAEQ KTVNKDELLQ MVRFGAEMVF SSKDSTITDE DIDRIIAKGE EATAELDAKM
0701: KKFTEDAIKF KMDDTAELYD FDDEKDENRF DIKKIVSENW IEPPKRERKR NYSESEYFKQ TMRQGGPTKP KEPRIPRMPQ LHDFQFFNTQ RLSELYEKEV
0801: RYLMQTHQKN QIKDSIDVDE PEEVGDPLTA EELEEKERLL EEGFSSWTRR DFNTFIRACE KYGRNDIKGI ASEMEGKTEE EVERYAKVFK ERYKELNDYD
0901: RIIKNIERGE ARISRKDEIM KAIGKKLDRY KNPWLELKIQ YGQNKGKLYN EECDRFMICM VHKLGYGNWD ELKAAFRTSP LFRFDWFVKS RTTQELARRC
1001: DTLIRLVEKE NQEYDERERQ ARKEKKLAKS MTPSKRALAR QTESPSSLKK RKQLTMDDYA STGKRRK
Best Arabidopsis Sequence Match ( AT5G18620.2 )
(BLAST)
0001: MARASKREVS SDEAYSSEEE EQVNDQANVE EDDDELEAVA RSAGSDEEDV APDEAPVSDD EVVPVEDDAE EDEEDEEKAE ISKREKARLK EMQKMKKQKI
0101: QQILDSQNAS IDADMNNKGK GRIKYLLQQT ELFAHFAKSD PSPSQKKGKG RGRHSSKLTE EEEDEECLKE EEGGIVGSGG TRLLTQPACI QGKLRDYQLA
0201: GLNWLIRLYE NGINGILADE MGLGKTLQTI SLLAYLHEYR GINGPHMVVA PKSTLGNWMN EIRRFCPVLR AVKFLGNPEE RRHIREELLV AGKFDICVTS
0301: FEMAIKEKTT LRRFSWRYII IDEAHRIKNE NSLLSKTMRL FSTNYRLLIT GTPLQNNLHE LWALLNFLLP EVFSSAETFD EWFQISGEND QQEVVQQLHK
0401: VLRPFLLRRL KSDVEKGLPP KKETILKVGM SQMQKQYYKA LLQKDLEVVN GGGERKRLLN IAMQLRKCCN HPYLFQGAEP GPPYTTGDHL VTNAGKMVLL
0501: DKLLPKLKDR DSRVLIFSQM TRLLDILEDY LMYRGYQYCR IDGNTGGDER DASIEAYNKP GSEKFVFLLS TRAGGLGINL ATADVVILYD SDWNPQVDLQ
0601: AQDRAHRIGQ KKEVQVFRFC TENAIEAKVI ERAYKKLALD ALVIQQGRLA EQKTVNKDEL LQMVRYGAEM VFSSKDSTIT DEDIDRIIAK GEEATAELDA
0701: KMKKFTEDAI QFKMDDSADF YDFDDDNKDE SKVDFKKIVS ENWNDPPKRE RKRNYSEVEY FKQTLRQGAP AKPKEPRIPR MPQLHDFQFF NIQRLTELYE
0801: KEVRYLMQAH QKTQMKDTIE VDEPEEVGDP LTAEEVEEKE LLLEEGFSTW SRRDFNAFIR ACEKYGRNDI KSIASEMEGK TEEEVERYAQ VFQVRYKELN
0901: DYDRIIKNIE RGEARISRKD EIMKAIGKKL DRYRNPWLEL KIQYGQNKGK LYNEECDRFM ICMVHKLGYG NWDELKAAFR TSPLFRFDWF VKSRTTQELA
1001: RRCDTLIRLI EKENQEFDER ERQARKEKKL SKSATPSKRP SGRQANESPS SLLKKRKQLS MDDYVSSGKR RK
Arabidopsis Description
CHR17Chromatin remodeling factor17 [Source:UniProtKB/TrEMBL;Acc:F4JY25]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.