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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • plastid 4
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
iPSORT:plastid
MultiLoc:nucleus
PProwler:plastid
TargetP:plastid
WoLF PSORT:nucleus
YLoc:nucleus
nucleus: 21132161
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH40427 Soybean nucleus 95.72 95.72
KRH48113 Soybean nucleus 80.06 79.92
KRH06623 Soybean nucleus 79.07 79.75
VIT_15s0046g02290.t01 Wine grape plastid 73.99 72.65
Bra000409.1-P Field mustard plastid 63.41 65.17
CDX83383 Canola nucleus, plastid 62.42 64.96
Solyc01g094800.2.1 Tomato nucleus 65.21 64.8
AT2G46020.3 Thale cress plastid 63.82 64.66
CDX95673 Canola cytosol 28.4 64.13
Bra039296.1-P Field mustard plastid 61.3 63.73
CDY37083 Canola plastid 60.49 63.73
CDY27338 Canola nucleus, plastid 60.22 63.59
CDX95672 Canola plastid 29.48 60.65
CDY71637 Canola nucleus 20.07 60.27
GSMUA_AchrUn_... Banana nucleus, plastid 58.73 58.55
OQU84199 Sorghum nucleus 54.91 57.52
GSMUA_Achr1P24350_001 Banana nucleus 55.04 57.36
Zm00001d014977_P002 Maize nucleus 54.46 55.94
TraesCS6A01G034200.2 Wheat nucleus, plastid 55.18 55.35
TraesCS6D01G039800.1 Wheat nucleus, plastid 55.0 55.22
GSMUA_AchrUn_... Banana nucleus 53.24 55.13
TraesCS6B01G048200.2 Wheat nucleus, plastid 54.77 55.07
HORVU6Hr1G006050.1 Barley plastid 54.82 55.01
KRH35559 Soybean nucleus 15.98 33.12
KRG91253 Soybean nucleus 15.93 32.99
KRH27613 Soybean nucleus 15.26 31.89
KRH28662 Soybean cytosol 9.68 28.18
KRH76800 Soybean cytosol 9.63 28.08
KRH50913 Soybean nucleus 13.05 27.41
KRH11241 Soybean nucleus 13.19 27.33
KRH21031 Soybean nucleus 13.01 27.09
KRH02212 Soybean nucleus 12.87 27.01
KRG89166 Soybean nucleus 9.0 26.6
KRH49484 Soybean nucleus 8.87 26.13
KRH05279 Soybean nucleus 4.86 23.84
KRH75253 Soybean cytosol, nucleus, plastid 9.41 23.8
KRH02187 Soybean nucleus 14.04 22.56
KRH73568 Soybean nucleus 8.42 19.2
KRH33202 Soybean nucleus 12.06 18.37
KRH66858 Soybean nucleus 12.6 18.28
KRG95191 Soybean nucleus 12.56 18.22
KRH52357 Soybean nucleus 11.48 17.71
KRH61691 Soybean nucleus 11.43 17.61
KRH14560 Soybean nucleus 13.37 16.84
KRH71872 Soybean nucleus 13.41 14.6
KRH42374 Soybean nucleus 14.0 14.37
KRH38118 Soybean nucleus 13.23 14.35
KRH58495 Soybean nucleus 14.22 13.53
KRH50934 Soybean nucleus 19.17 11.24
Protein Annotations
Gene3D:1.20.920.10EntrezGene:100811608MapMan:12.4.1.1.3Gene3D:3.40.50.10810Gene3D:3.40.50.300EMBL:ACUP02011474
InterPro:BRMInterPro:BromodomainInterPro:Bromodomain-like_sfncoils:CoilEnsemblPlantsGene:GLYMA_18G234700GO:GO:0000166
GO:GO:0003674GO:GO:0003824GO:GO:0005488GO:GO:0005515GO:GO:0005524GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006355GO:GO:0008094
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0016043GO:GO:0016787
GO:GO:0040029GO:GO:0043044InterPro:Gln-Leu-Gln_QLQInterPro:Helicase_ATP-bdInterPro:Helicase_CUniProt:I1N3S1
InterPro:IPR001487InterPro:IPR001650InterPro:IPR014001InterPro:IPR014978InterPro:IPR036427InterPro:IPR038718
EnsemblPlants:KRH00799ProteinID:KRH00799ProteinID:KRH00799.1InterPro:P-loop_NTPasePFAM:PF00176PFAM:PF00271
PFAM:PF08880PFscan:PS51192PFscan:PS51194PFscan:PS51666PANTHER:PTHR10799PANTHER:PTHR10799:SF577
SMART:SM00297SMART:SM00487SMART:SM00490SMART:SM00951InterPro:SNF2-like_sfInterPro:SNF2_N
SUPFAM:SSF47370SUPFAM:SSF52540UniParc:UPI000233E412SEG:seg::
Description
hypothetical protein
Coordinates
chr18:+:52303944..52315499
Molecular Weight (calculated)
247595.0 Da
IEP (calculated)
9.024
GRAVY (calculated)
-0.749
Length
2222 amino acids
Sequence
(BLAST)
0001: MQSGGGAGGG PGRKPAGRAP STSSAAASPS SSSSAASHLE SLQQQQQQQQ QQQQIGSRQS FQQQLLRKPE GSEAFLAYQA GLQGVFGSNN FPSSSMQLPQ
0101: QSRKFVDLAQ HGSNQVQGVE QQMLNPVQAA YFQYALQASQ QKSALAMQSQ QQPKVGMLGP SSVKDQEMRM GNLKMQDLMS MQAVNQVQAS SSRNSSEHFT
0201: WGEKRVEQGQ QLAPDQKSEG NSSSQGPAVG NLMPGNIIRP VQALATQQSI PNTMNNQIAM AAQLRAMQAW AHERNIDLSH PANANLMAQL IPLMQSRIVQ
0301: QPKANDTNLG AMSSPVPVSN QQVTSPAVAS ESSAHANSSS DVSAQSGSAK ARQTAPPSHL SPPISAGIAS SSSDMAAQQF SLHGRDAQGS LKQSVLTING
0401: MPSVHPQQSS ANMNLGADHP LNVKTSSSGS EPAKMQYIRQ LSQSTSQAGG LTNEGGSGNH PKTQGGPSQM PQQRNGFTKQ QLHVLKAQIL AFRRLKKAEG
0501: ALPQELLRAI IPPPLDLQVQ QPIHSEGAQN QEKSAGNIVA EHPRQNEVNA KDSQPISSIN GKNSSKQEVF VRDENSTVTA VQVQGTPRVT KESAGKEEQQ
0601: SVACSAKSDQ ESEHGIGRTP VRNELVLDKG KAVAAPQASV NDAMQLNKPA QASAVSQTKD VGSTRKYHGP LFDFPFFTRK HDSFGSSMMI NNNNLSLAYD
0701: VKELLFEEGI EVLGKRRTES LKKIEGLLAV NLERKRIRPD LVLRLQIEEK KLRLLDLQAR LRDEIDQQQQ EIMAMPDRPY RKFVRLCERQ RMELARQVQA
0801: SQRALREKQL KSIFQWRKKL LETHWAIRDA RTARNRGVAK YHERMLREFS KRKDDDRNKR MEALKNNDVD RYREMLLEQQ TSIQGDAAER YAVLSTFLTQ
0901: TEEYLHKLGS KITAAKNQQE VEEAAKAAAA AARLQGLSEE EVRAAAACAG EEVMIRNRFM EMNAPKDNSS VSKYYSLAHA VSEKVVCQPS MLRAGTLRDY
1001: QLVGLQWMLS LYNNKLNGIL ADEMGLGKTV QVMALIAYLM EFKGNYGPHL IIVPNAVMVN WKSELYTWLP SVSCIFYAGG KDYRSKLYSQ EIMAMKFNVL
1101: VTTYEFIMYD RARLSKIDWK YIIIDEAQRM KDRDSVLARD LDRYRCQRRL LLTGTPLQND LKELWSLLNL LLPEVFDNKK AFNDWFSKPF QKEGPTQNTE
1201: DDWLETEKKV IIIHRLHQIL EPFMLRRRVE DVEGSLPPKV SIVLRCKMSA VQSAIYDWVK STGTLRLDPE GENSKIQKNP HYQAKEYKTL NNRCMELRKT
1301: CNHPSLNYPL LGELSTNSIV KSCGKLWILD RILIKLQRTG HRVLLFSTMT KLLDLLEDYL NWRRLVYRRI DGTTNLDDRE SAIMDFNSPD SDCFIFLLSI
1401: RAAGRGLNLQ SADTVVIYDP DPNPKNEEQA VARAHRIGQK REVRVIYMEA VVDKISSHQK EDELRSGGTV DMEDELVGKD RYIGSIESLI RNNIQQYKID
1501: MADEVINAGR FDQRTTHEER RLTLETLLHD EERYQENVHD VPSLQEVNRM IARSEEEVEL FDQMDEELDW PEDVMQHDEV PEWLRANTRE VNAAIAALSK
1601: RPSKNTLLGG SIGMESSEVG SERRRGRPKG KKHPNYKELE DENGEYSEAN SEDRNEDSAQ EGENGEFEDD GYSGADGNRL EEDGLTSDAG YEIALSSENA
1701: RNNHVVEEAG SSGSSSDSQR LTKTVSPSVS SKKFGSLSAL DARPGSISKI MGDELEEGEI VVSGDSHMDH QQSGSWIHDR DEGEDEQVLQ KPKIKRKRSL
1801: RVRPRHAMER PEDKSGSEMI SLQRGESSVL ADYKYQIQKR IDPESKSFGD SNASKHDKNE ASLKNKQKLP SRKIANSSKL HGSPKSNRLN CTSAPSEDGN
1901: EHPTESWEGK HLNPNGSSAH GTKTTEIIQR GCKNVISKLQ RRIDKEGHQI VPLLTDLWKR MENSGHAGGS GNNLLDLRKI DQRIDRMDYS GVMELVFDVQ
2001: FMLRGAMHFY GYSYEVRTEG RKVHDLFFDI LKIAFPDTDF GEARGALSFS SQAPAGTAAS PRQGTVGPSK RHRMTNDAET DPCPSQKLSQ SGSTSNGENA
2101: RFKGHLPQKN SRTGSSSARE QPQQDNPPLL AHPGQLVVCK KKRNDRDKSL GKGRTGSTGP ISPPSAIRSP GSGSTPKDAR LAQQGRGSQP SQHSNGSGGS
2201: VGWANPVKRL RTDSGKRRPS HM
Best Arabidopsis Sequence Match ( AT2G46020.4 )
(BLAST)
0001: MQSGGSGGGP ARNPAMGPAG RTASTSSAAS PSSSSSSVQQ QQQQQQQQQQ QQQLASRQQQ QQHRNSDTNE NMFAYQPGGV QGMMGGGNFA SSPGSMQMPQ
0101: QSRNFFESPQ QQQQQQQQGS STQEGQQNFN PMQQAYIQFA MQAQHQKAQQ QARMGMVGSS SVGKDQDARM GMLNMQDLNP SSQPQASSSK PSGDQFARGE
0201: RQTESSSQQR NETKSHPQQQ VGTGQLMPGN MIRPMQAPQA QQLVNNMGNN QLAFAQQWQA MQAWARERNI DLSHPANASQ MAHILQARMA AQQKAGEGNV
0301: ASQSPSIPIS SQPASSSVVP GENSPHANSA SDISGQSGSA KARHALSTGS FASTSSPRMV NPAMNPFSGQ GRENPMYPRH LVQPTNGMPS GNPLQTSANE
0401: TPVLDQNAST KKSLGPAEHL QMQQPRQLNT PTPNLVAPSD TGPLSNSSLQ SGQGTQQAQQ RSGFTKQQLH VLKAQILAFR RLKKGEGSLP PELLQAISPP
0501: PLELQTQRQI SPAIGKVQDR SSDKTGEDQA RSLECGKESQ AAASSNGPIF SKEEDNVGDT EVALTTGHSQ LFQNLGKEAT STDVATKEEQ QTDVFPVKSD
0601: QGADSSTQKN PRSDSTADKG KAVASDGSQS KVPPQANSPQ PPKDTASARK YYGPLFDFPF FTRKLDSYGS ATANANNNLT LAYDIKDLIC EEGAEFLSKK
0701: RTDSLKKING LLAKNLERKR IRPDLVLRLQ IEEKKLRLSD LQSRVREEVD RQQQEIMSMP DRPYRKFVRL CERQRLEMNR QVLANQKAVR EKQLKTIFQW
0801: RKKLLEAHWA IRDARTARNR GVAKYHEKML REFSKRKDDG RNKRMEALKN NDVERYREML LEQQTNMPGD AAERYAVLSS FLTQTEDYLH KLGGKITATK
0901: NQQEVEEAAN AAAVAARLQG LSEEEVRAAA TCAREEVVIR NRFTEMNAPK ENSSVNKYYT LAHAVNEVVV RQPSMLQAGT LRDYQLVGLQ WMLSLYNNKL
1001: NGILADEMGL GKTVQVMALI AYLMEFKGNY GPHLIIVPNA VLVNWKSELH TWLPSVSCIY YVGTKDQRSK LFSQEVCAMK FNVLVTTYEF IMYDRSKLSK
1101: VDWKYIIIDE AQRMKDRESV LARDLDRYRC QRRLLLTGTP LQNDLKELWS LLNLLLPDVF DNRKAFHDWF AQPFQKEGPA HNIEDDWLET EKKVIVIHRL
1201: HQILEPFMLR RRVEDVEGSL PAKVSVVLRC RMSAIQSAVY DWIKATGTLR VDPDDEKLRA QKNPIYQAKI YRTLNNRCME LRKACNHPLL NYPYFNDFSK
1301: DFLVRSCGKL WILDRILIKL QRTGHRVLLF STMTKLLDIL EEYLQWRRLV YRRIDGTTSL EDRESAIVDF NDPDTDCFIF LLSIRAAGRG LNLQTADTVV
1401: IYDPDPNPKN EEQAVARAHR IGQTREVKVI YMEAVVEKLS SHQKEDELRS GGSVDLEDDM AGKDRYIGSI EGLIRNNIQQ YKIDMADEVI NAGRFDQRTT
1501: HEERRMTLET LLHDEERYQE TVHDVPSLHE VNRMIARSEE EVELFDQMDE EFDWTEEMTN HEQVPKWLRA STREVNATVA DLSKKPSKNM LSSSNLIVQP
1601: GGPGGERKRG RPKSKKINYK EIEDDIAGYS EESSEERNID SGNEEEGDIR QFDDDELTGA LGDHQTNKGE FDGENPVCGY DYPPGSGSYK KNPPRDDAGS
1701: SGSSPESHRS KEMASPVSSQ KFGSLSALDT RPGSVSKRLL DDLEEGEIAA SGDSHIDLQR SGSWAHDRDE GDEEQVLQPT IKRKRSIRLR PRQTAERVDG
1801: SEMPAAQPLQ VDRSYRSKLR TVVDSHSSRQ DQSDSSSRLR SVPAKKVAST SKLHVSSPKS GRLNATQLTV EDNAEASRET WDGTSPISSS NAGARMSHII
1901: QKRCKIVISK LQRRIDKEGQ QIVPMLTNLW KRIQNGYAAG GVNNLLELRE IDHRVERLEY AGVMELASDV QLMLRGAMQF YGFSHEVRSE AKKVHNLFFD
2001: LLKMSFPDTD FREARNALSF SGSAPTLVST PTPRGAGISQ GKRQKLVNEP ETEPSSPQRS QQRENSRIRV QIPQKETKLG GTTSHTDESP ILAHPGELVI
2101: CKKKRKDREK SGPKTRTGGS SSPVSPPPAM IGRGLRSPVS GGVPRETRLA QQQRWPNQPT HPNNSGAAGD SVGWANPVKR LRTDSGKRRP SHL
Arabidopsis Description
BRMATP-dependent helicase BRM [Source:UniProtKB/Swiss-Prot;Acc:Q6EVK6]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.