CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH21031	Soybean	nucleus	98.23	98.69
KRH50913	Soybean	nucleus	90.86	92.06
VIT_05s0020g01780.t01	Wine grape	nucleus	91.79	91.11
KRH02212	Soybean	nucleus	89.65	90.75
CDY47176	Canola	cytosol	39.83	90.08
Bra040221.1-P	Field mustard	nucleus	86.47	88.37
AT3G06400.3	Thale cress	nucleus	87.13	88.36
PGSC0003DMT400079102	Potato	nucleus	87.13	88.28
CDY18857	Canola	nucleus	86.38	88.27
PGSC0003DMT400058376	Potato	nucleus	87.03	87.69
Solyc06g054560.2.1	Tomato	nucleus	86.66	87.56
Solyc01g067390.2.1	Tomato	nucleus	86.57	87.14
AT5G18620.2	Thale cress	nucleus	87.03	87.03
CDY24695	Canola	nucleus	84.98	86.51
Bra020751.1-P	Field mustard	nucleus	84.89	86.42
CDY13907	Canola	nucleus	83.49	84.51
GSMUA_Achr8P09960_001	Banana	nucleus	84.89	84.18
Bra002173.1-P	Field mustard	nucleus	83.49	84.12
CDX92595	Canola	nucleus	70.15	84.12
GSMUA_Achr3P23910_001	Banana	nucleus	83.49	83.72
KXG32501	Sorghum	nucleus	84.42	81.75
Os01t0367900-01	Rice	nucleus	83.4	80.76
CDY05261	Canola	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	85.26	80.67
Zm00001d040831_P021	Maize	nucleus	84.14	80.54
CDY02609	Canola	nucleus	79.01	80.28
Zm00001d009312_P028	Maize	nucleus	84.61	80.27
TraesCS1B01G118900.2	Wheat	nucleus	82.56	80.02
TraesCS1D01G099600.1	Wheat	nucleus	82.46	79.86
Bra023689.1-P	Field mustard	nucleus	81.72	79.56
TraesCS1A01G091100.1	Wheat	nucleus	81.9	79.39
Os05t0150300-01	Rice	nucleus	83.86	77.63
TraesCS3D01G068900.1	Wheat	nucleus	79.01	75.56
TraesCS3B01G083400.1	Wheat	nucleus	79.38	75.04
TraesCS3A01G069900.2	Wheat	nucleus	79.01	74.96
HORVU1Hr1G021540.17	Barley	plasma membrane	82.37	74.77
HORVU3Hr1G012850.1	Barley	nucleus	76.96	72.82
KRH76800	Soybean	cytosol	25.09	35.3
KRH28662	Soybean	cytosol	25.0	35.12
KRH35559	Soybean	nucleus	27.89	27.89
KRH27613	Soybean	nucleus	27.61	27.85
KRG91253	Soybean	nucleus	27.71	27.68
KRG89166	Soybean	nucleus	19.12	27.26
KRH49484	Soybean	nucleus	19.12	27.19
KRH75253	Soybean	cytosol, nucleus, plastid	21.92	26.77
KRH05279	Soybean	nucleus	9.42	22.3
KRH14560	Soybean	nucleus	33.58	20.41
KRH73568	Soybean	nucleus	18.47	20.33
KRH52357	Soybean	nucleus	26.68	19.86
KRH61691	Soybean	nucleus	26.59	19.76
KRH33202	Soybean	nucleus	22.67	16.66
KRG95191	Soybean	nucleus	23.13	16.2
KRH66858	Soybean	nucleus	23.13	16.19
KRH02187	Soybean	nucleus	19.96	15.47
KRH71872	Soybean	nucleus	27.89	14.65
KRH38118	Soybean	nucleus	27.89	14.59
KRH42374	Soybean	nucleus	27.24	13.49
KRH00799	Soybean	nucleus	27.33	13.19
KRH48113	Soybean	nucleus	27.33	13.16
KRH40427	Soybean	nucleus	27.05	13.05
KRH06623	Soybean	nucleus	26.59	12.94
KRH58495	Soybean	nucleus	27.52	12.63
KRH50934	Soybean	nucleus	29.48	8.34

Protein Annotations

Gene3D:1.10.10.60	Gene3D:1.10.1040.30	EntrezGene:100809750	MapMan:12.4.1.1.4	Gene3D:3.40.50.10810	Gene3D:3.40.50.300
EMBL:ACUP02009195	ncoils:Coil	InterPro:DBINO	EnsemblPlantsGene:GLYMA_15G097000	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003682	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006325
GO:GO:0006338	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016569
GO:GO:0016589	GO:GO:0016787	GO:GO:0016818	GO:GO:0016887	GO:GO:0031491	GO:GO:0043044
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:Homeobox-like_sf	UniProt:I1MF56	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR017884	InterPro:IPR020838	InterPro:IPR036306	InterPro:IPR038718	InterPro:ISWI	InterPro:ISWI_HAND-dom
InterPro:ISWI_HAND-dom_sf	EnsemblPlants:KRH11241	ProteinID:KRH11241	ProteinID:KRH11241.1	InterPro:P-loop_NTPase	PFAM:PF00176
PFAM:PF00271	PFAM:PF09110	PFAM:PF09111	PFAM:PF13892	PFscan:PS51192	PFscan:PS51194
PFscan:PS51293	PANTHER:PTHR10799	PANTHER:PTHR10799:SF887	InterPro:SANT/Myb	InterPro:SANT_dom	InterPro:SLIDE
SMART:SM00487	SMART:SM00490	SMART:SM00717	InterPro:SNF2-like_sf	InterPro:SNF2_N	SUPFAM:SSF101224
SUPFAM:SSF46689	SUPFAM:SSF52540	UniParc:UPI000233B16A	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr15:-:7536232..7544224

Molecular Weight (calculated)

124522.0 Da

IEP (calculated)

5.624

GRAVY (calculated)

-0.824

Length

1072 amino acids

Sequence
(BLAST)

0001: MARPSKLHSS SDEALSNASS SSDEEEQVNE QINEEEDEEE LEAVARPASS ADDDDEVAGD NPPDSDEDPA ADDADDDQDG DNVDPEISKR EKARLKEMQK
0101: MKKQKIQEIL DVQNAAIDAD MNNRGKGRLK YLLQQTELFA HFAKGDQSSS QKKSRGRGRH ASNFTEEEED EEYLKGEEDG LANTRLVTQP SCIQGKMRDY
0201: QLAGLNWLIR LYENGINGIL ADEMGLGKTL QTISLLGYLH EFRGIKGPHM VVAPKSTLGN WMNEIRRFCP VLRAIKFLGN PDERRHIRDE LLVAGKFDVC
0301: VTSFEMAIKE KSALRRFSWR YIIIDEAHRI KNENSLLSKT MRLYSTNYRL LITGTPLQNN LHELWSLLNF LLPEIFSSAE TFDEWFQISG ENDQQEVVQQ
0401: LHKVLRPFLL RRLKSDVEKG LPPKKETILK VGMSQMQKQY YRALLQKDLE VVNAGGERKR LLNIAMQLRK CCNHPYLFQG AEPGPPFTTG DHLIENAGKM
0501: VLLDKLLPKL KERDSRVLIF SQMTRLLDIL EDYLMFRGYQ YCRIDGNTGG DDRDASIDAF NKPGSEKFVF LLSTRAGGLG INLATADVVI LYDSDWNPQV
0601: DLQAQDRAHR IGQKKEVQVF RFCTEYTIEE KVIERAYKKL ALDALVIQQG RLAEQKTVNK DELLQMVRFG AEMVFSSKDS TITDEDIDRI IAKGEEATAE
0701: LDAKMKKFTE DAIKFKMDDT AELYDFDDEK DESRFDIKKI VSENWIEPPK RERKRNYSES EYFKQTMRQG GPTKPKEPRI PRMPQLHDFQ FFNTQRLSEL
0801: YEKEVRYLMQ THQRNQIKDS IDVDEPEEVG DPLTAEELEE KERLLEEGFS SWSRRDFNTF IRACEKYGRN DIQSIASEME GKTEEEVERY AKVFKERYKE
0901: LNDYDRIIKN IERGEARISR KDEIMKAIGK KLDRYKNPWL ELKIQYGQNK GKLYNEECDR FMICMVHKLG YGNWDELKAA FRTSPLFRFD WFVKSRTTQE
1001: LARRCDTLIR LVEKENQEYD ERERQARKEK KLAKSMTPSK RALARQTESP SSLKKRKQLT MDDYASTGKR RK

Best Arabidopsis Sequence Match ( AT5G18620.2 )
(BLAST)

0001: MARASKREVS SDEAYSSEEE EQVNDQANVE EDDDELEAVA RSAGSDEEDV APDEAPVSDD EVVPVEDDAE EDEEDEEKAE ISKREKARLK EMQKMKKQKI
0101: QQILDSQNAS IDADMNNKGK GRIKYLLQQT ELFAHFAKSD PSPSQKKGKG RGRHSSKLTE EEEDEECLKE EEGGIVGSGG TRLLTQPACI QGKLRDYQLA
0201: GLNWLIRLYE NGINGILADE MGLGKTLQTI SLLAYLHEYR GINGPHMVVA PKSTLGNWMN EIRRFCPVLR AVKFLGNPEE RRHIREELLV AGKFDICVTS
0301: FEMAIKEKTT LRRFSWRYII IDEAHRIKNE NSLLSKTMRL FSTNYRLLIT GTPLQNNLHE LWALLNFLLP EVFSSAETFD EWFQISGEND QQEVVQQLHK
0401: VLRPFLLRRL KSDVEKGLPP KKETILKVGM SQMQKQYYKA LLQKDLEVVN GGGERKRLLN IAMQLRKCCN HPYLFQGAEP GPPYTTGDHL VTNAGKMVLL
0501: DKLLPKLKDR DSRVLIFSQM TRLLDILEDY LMYRGYQYCR IDGNTGGDER DASIEAYNKP GSEKFVFLLS TRAGGLGINL ATADVVILYD SDWNPQVDLQ
0601: AQDRAHRIGQ KKEVQVFRFC TENAIEAKVI ERAYKKLALD ALVIQQGRLA EQKTVNKDEL LQMVRYGAEM VFSSKDSTIT DEDIDRIIAK GEEATAELDA
0701: KMKKFTEDAI QFKMDDSADF YDFDDDNKDE SKVDFKKIVS ENWNDPPKRE RKRNYSEVEY FKQTLRQGAP AKPKEPRIPR MPQLHDFQFF NIQRLTELYE
0801: KEVRYLMQAH QKTQMKDTIE VDEPEEVGDP LTAEEVEEKE LLLEEGFSTW SRRDFNAFIR ACEKYGRNDI KSIASEMEGK TEEEVERYAQ VFQVRYKELN
0901: DYDRIIKNIE RGEARISRKD EIMKAIGKKL DRYRNPWLEL KIQYGQNKGK LYNEECDRFM ICMVHKLGYG NWDELKAAFR TSPLFRFDWF VKSRTTQELA
1001: RRCDTLIRLI EKENQEFDER ERQARKEKKL SKSATPSKRP SGRQANESPS SLLKKRKQLS MDDYVSSGKR RK

Arabidopsis Description

CHR17Chromatin remodeling factor17 [Source:UniProtKB/TrEMBL;Acc:F4JY25]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.