Factsheet for Bra006766.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002649.1-P
Bra006766.1-P
Bra012351.1-P
Bra024548.1-P
Bra030818.1-P
Bra031327.1-P
Bra032836.1-P
Bra034727.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G37055.1	Bra012351.1-P	AT1G22920.1	21798944
AT5G37055.1	Bra024548.1-P	AT1G22920.1	21798944
AT5G37055.1	Bra034727.1-P	AT3G12810.1	17142478
AT5G37055.1	Bra034727.1-P	AT3G12810.1	17470967
AT5G37055.1	Bra030818.1-P	AT3G33520.1	17142478
AT5G37055.1	Bra030818.1-P	AT3G33520.1	17470967
AT5G37055.1	Bra002649.1-P	AT5G37055.1	17470967
AT5G37055.1	Bra006766.1-P	AT5G37055.1	17470967
AT5G37055.1	Bra031327.1-P	AT5G37055.1	17470967
AT5G37055.1	Bra032836.1-P	AT5G37055.1	17470967

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70943	Canola	nucleus	97.08	97.08
Bra002649.1-P	Field mustard	mitochondrion	94.74	94.74
Bra031327.1-P	Field mustard	mitochondrion	35.67	93.85
AT5G37055.1	Thale cress	mitochondrion	91.23	91.23
CDY60020	Canola	cytosol	59.06	77.1
Bra032836.1-P	Field mustard	mitochondrion	57.89	76.15
KRG98203	Soybean	nucleus	74.85	73.99
KRH30163	Soybean	nucleus	73.68	72.83
VIT_08s0007g08060.t01	Wine grape	mitochondrion	71.93	71.51
PGSC0003DMT400058037	Potato	nucleus	67.84	67.84
Solyc03g033480.2.1	Tomato	nucleus	67.25	67.25
EES16500	Sorghum	cytosol, nucleus, plastid	64.91	64.16
EES16499	Sorghum	mitochondrion	64.33	63.95
TraesCS5A01G151300.1	Wheat	cytosol, nucleus, plastid	63.74	63.01
TraesCS5B01G149800.2	Wheat	cytosol, nucleus, plastid	63.74	63.01
Os03t0367800-01	Rice	cytosol, mitochondrion, nucleus	64.33	62.86
Zm00001d052325_P001	Maize	cytosol, nucleus, plastid	62.57	61.85
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus	70.18	60.0
HORVU5Hr1G047490.2	Barley	plastid	63.74	58.6
TraesCS5D01G156400.2	Wheat	cytosol, mitochondrion, nucleus	61.4	55.56
KXG22781	Sorghum	plastid	26.9	48.42

Protein Annotations

EnsemblPlants:Bra006766.1	EnsemblPlants:Bra006766.1-P	EnsemblPlantsGene:Bra006766	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872
InterPro:IPR007529	InterPro:Znf_HIT	PANTHER:PTHR13093	PFAM:PF04438	PFscan:PS51083	SEG:seg
SUPFAM:SSF144232	UniParc:UPI000254031E	UniProt:M4CRC5	MapMan:12.4.4.3	:	:

Description

AT5G37055 (E=4e-077) ATSWC6, SEF | SEF (SERRATED LEAVES AND EARLY FLOWERING)

Coordinates

chrA03:+:4965286..4966003

Molecular Weight (calculated)

19084.6 Da

IEP (calculated)

8.488

GRAVY (calculated)

-0.705

Length

171 amino acids

Sequence
(BLAST)

001: MEEDMANRRV SSRTRKVASK MAAALTSTDN RTQAAIARLE ALENDNGAVE VVDLNDDEEA SLDEDDDLGY MQRKQHKGSK RKTRQAKALE ARKAPKSFTE
101: LLQEANLESL PSHVPPYLKA AGGPPSSSSR RHFCTVCGYI AGYNCWLCGM RFCSIRCQNI HKDTRCQKFV A

Best Arabidopsis Sequence Match ( AT5G37055.1 )
(BLAST)

001: MEEEMSNRRV SNRTRKVATK MAAALTSNDN RTQAAIARLE ALENDNGAIE VIDLNDDEEA SLDEDDDLGY LQKKQHKGSK RKTRQAKALE ARKAPKSFLE
101: LLQEANLESL PSHVPTYLKA AVGPPSSSSR RYFCSVCGYI AGYNCCLCGM RFCSIRCQNI HKDTRCQKFV A

Arabidopsis Description

SWC6SWR1 complex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHW2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.