CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES14361
EES16499
EES16500
KXG22781
KXG27287
OQU79631
OQU85588

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G37055.1	KXG27287	AT1G22920.1	21798944
AT5G37055.1	EES14361	AT2G36740.1	17470967
AT5G37055.1	OQU85588	AT3G12810.1	17142478
AT5G37055.1	OQU85588	AT3G12810.1	17470967
AT5G37055.1	OQU79631	AT3G33520.1	17142478
AT5G37055.1	OQU79631	AT3G33520.1	17470967
AT5G37055.1	EES16499	AT5G37055.1	17470967
AT5G37055.1	EES16500	AT5G37055.1	17470967
AT5G37055.1	KXG22781	AT5G37055.1	17470967

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES16500	Sorghum	cytosol, nucleus, plastid	72.63	39.88
EES16499	Sorghum	mitochondrion	69.47	38.37
Zm00001d052325_P001	Maize	cytosol, nucleus, plastid	68.42	37.57
CDY60020	Canola	cytosol	50.53	36.64
Os03t0367800-01	Rice	cytosol, mitochondrion, nucleus	67.37	36.57
TraesCS5B01G149800.2	Wheat	cytosol, nucleus, plastid	66.32	36.42
TraesCS5A01G151300.1	Wheat	cytosol, nucleus, plastid	66.32	36.42
HORVU5Hr1G047490.2	Barley	plastid	67.37	34.41
TraesCS5D01G156400.2	Wheat	cytosol, mitochondrion, nucleus	64.21	32.28
KRH30163	Soybean	nucleus	54.74	30.06
KRG98203	Soybean	nucleus	54.74	30.06
PGSC0003DMT400058037	Potato	nucleus	52.63	29.24
Solyc03g033480.2.1	Tomato	nucleus	52.63	29.24
VIT_08s0007g08060.t01	Wine grape	mitochondrion	52.63	29.07
CDY70943	Canola	nucleus	50.53	28.07
AT5G37055.1	Thale cress	mitochondrion	50.53	28.07
Bra002649.1-P	Field mustard	mitochondrion	49.47	27.49
CDY57389	Canola	mitochondrion	49.47	27.49
CDY32983	Canola	mitochondrion	49.47	27.49
Bra006766.1-P	Field mustard	nucleus	48.42	26.9
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus	54.74	26.0
Bra032836.1-P	Field mustard	mitochondrion	25.26	18.46
Bra031327.1-P	Field mustard	mitochondrion	0.0	0.0
CDY40293	Canola	mitochondrion	0.0	0.0
CDX99412	Canola	mitochondrion	0.0	0.0
CDX99372	Canola	mitochondrion	0.0	0.0
CDX77159	Canola	mitochondrion	0.0	0.0

Protein Annotations

EnsemblPlants:KXG22781	EnsemblPlantsGene:SORBI_3008G007500	PANTHER:PTHR13093	ProteinID:KXG22781	ProteinID:KXG22781.1	UniParc:UPI00081AB45E
UniProt:A0A1B6PAX1	MapMan:12.4.4.3	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:596884..598203

Molecular Weight (calculated)

10523.7 Da

IEP (calculated)

10.087

GRAVY (calculated)

-0.381

Length

95 amino acids

Sequence
(BLAST)

1: MQKRQSKIVK RKTSQGKALE KRAARSFMDV LQETNLESLP PHIPTYLRAA VDPPSTSSRW HYCSVCCSSA NYTCVSVEQG SVLAAAKSYA MIRTA

Best Arabidopsis Sequence Match ( AT5G37055.1 )
(BLAST)

001: MEEEMSNRRV SNRTRKVATK MAAALTSNDN RTQAAIARLE ALENDNGAIE VIDLNDDEEA SLDEDDDLGY LQKKQHKGSK RKTRQAKALE ARKAPKSFLE
101: LLQEANLESL PSHVPTYLKA AVGPPSSSSR RYFCSVCGYI AGYNCCLCGM RFCSIRCQNI HKDTRCQKFV A

Arabidopsis Description

SWC6SWR1 complex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHW2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.