CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EES16499
EES16500
KXG22781
OQU85588

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G33520.1	OQU85588	AT3G12810.1	17142478
AT3G33520.1	OQU85588	AT3G12810.1	17470967
AT3G33520.1	EES16499	AT5G37055.1	17142478
AT3G33520.1	EES16500	AT5G37055.1	17142478
AT3G33520.1	KXG22781	AT5G37055.1	17142478
AT3G33520.1	EES16499	AT5G37055.1	17470967
AT3G33520.1	EES16500	AT5G37055.1	17470967
AT3G33520.1	KXG22781	AT5G37055.1	17470967

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d024059_P002	Maize	cytosol	92.59	93.02
TraesCS2B01G597500.1	Wheat	cytosol	87.5	87.91
HORVU0Hr1G005770.1	Barley	cytosol	87.5	87.91
TraesCS2A01G585700.1	Wheat	cytosol	87.27	87.67
TraesCS2D01G600800.1	Wheat	cytosol	87.04	87.44
TraesCS1B01G333100.1	Wheat	cytosol	87.04	87.44
Os01t0269900-01	Rice	cytosol	86.34	86.95
GSMUA_AchrUn_...	Banana	cytosol	73.15	72.64
VIT_11s0016g05490.t01	Wine grape	cytosol	68.75	68.59
Bra030818.1-P	Field mustard	cytosol	33.56	65.32
KRH61849	Soybean	cytosol, nucleus	65.51	64.91
Solyc05g018600.2.1	Tomato	cytosol	65.51	64.61
PGSC0003DMT400038724	Potato	cytosol	65.28	64.38
CDY42404	Canola	cytosol	62.73	63.47
AT3G33520.1	Thale cress	cytosol	61.81	63.42
EER90564	Sorghum	cytosol	29.86	34.22
KXG23031	Sorghum	cytosol	29.63	33.95
EER93954	Sorghum	cytosol	29.63	33.95
EES19603	Sorghum	cytosol	29.4	33.78
EES01810	Sorghum	cytosol	29.4	33.78
EES08028	Sorghum	cytosol	29.4	33.69
KXG21029	Sorghum	cytosol	29.4	33.69
KXG37705	Sorghum	cytosol	28.94	33.16
KXG21030	Sorghum	cytosol	25.93	28.79
EER99952	Sorghum	cytosol	24.54	27.25
EER91551	Sorghum	cytosol	21.3	25.56
KXG30555	Sorghum	cytosol	24.77	24.71
EER93001	Sorghum	cytosol	24.54	23.93
KXG24330	Sorghum	cytosol	21.99	21.84

Protein Annotations

Gene3D:3.30.420.40	Gene3D:3.90.640.10	MapMan:35.1	EntrezGene:8071478	InterPro:Actin	InterPro:Arp6
UniProt:C5YSC7	ProteinID:EES16392.1	GO:GO:0000003	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006338	GO:GO:0006355	GO:GO:0006950	GO:GO:0006970
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008283	GO:GO:0009058	GO:GO:0009266
GO:GO:0009628	GO:GO:0009791	GO:GO:0009845	GO:GO:0009908	GO:GO:0009910	GO:GO:0009987
GO:GO:0016043	ProteinID:KXG24017.1	EnsemblPlants:OQU79631	ProteinID:OQU79631	ProteinID:OQU79631.1	PFAM:PF00022
PANTHER:PTHR11937	PANTHER:PTHR11937:SF47	SMART:SM00268	EnsemblPlantsGene:SORBI_3008G173100	SUPFAM:SSF53067	unigene:Sbi.12789
UniParc:UPI0001A88189	RefSeq:XP_002442554.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:60670742..60675924

Molecular Weight (calculated)

48660.5 Da

IEP (calculated)

5.847

GRAVY (calculated)

-0.236

Length

432 amino acids

Sequence
(BLAST)

001: MTVGSRVVVI DNGGGLLKAG FGGDNDPIAV VPNCMAKPPG GNANSKKWLV ADQLQAEDVD VTGMTLKRPI DRGYLINTEV QKEVWERVLR NLLQVDPTNS
101: SLLLVEPLFN PPALQHATDE LVFEEFGFNS LCVADSPSLV HLYEASRQPM LFRAQCSLVV DCGFSFTHAS PVLQNFTLNY GVRRMDLGGK ALTNYLKELV
201: SYRSLNVMDE TLLIDDAKEK LCFVSLDVPG DLHLARLSFK DNPFRCSYIL PDGITYKKGF VKDMNEAHRY RSLPLDEEAK RKEHSMDINK SEDRKKPELS
301: QNEFVLTNER FLVPEMLFHP IDLGINQAGL AECIVRAVQA CHPYLQPVLF ESIILTGGST LFPRFADRLE RELRPLVPDN YKVKITHQED PILGVWRGGS
401: ILASTPDFES MCTTKSEYEE MGSARCRRRF FH

Best Arabidopsis Sequence Match ( AT3G33520.1 )
(BLAST)

001: MSNIVVLDNG GGLIKAGQGG ERDPTTVIPN CLYKPLSSKK FIHPSPLTTL SDEIDLTSAA VRRPIDRGYL INSDLQREIW SHLFTSLLHI APSSSSLLLT
101: EAPLSIPSVQ RTTDELVFED FGFSSLYIAH PQSLVHLYEA SRQPDSILSK TQCSLVVDCG FSFTHAVPVL HNFTLNHAIK RIDLGGKAFT NYLKELVSYR
201: SINVMDETFL VDDAKEKLCF VSLDLLRDLR LARNGNTLIK STYVLPDGVT HTKGYVKDPQ AAKRFLSLSE KESVVVMDKV GERKKADMNK NEIDLTNERF
301: LVPETLFQPA DLGMNQAGLA ECIVRAINSC HSYLQPVLYQ SIILTGGSTL FPQLKERLEG ELRPLVPDHF DVKITTQEDP ILGVWRGGSL LASSPDFESM
401: CVTKAEYEEL GSARCRRRFF H

Arabidopsis Description

ARP6SUF3 [Source:UniProtKB/TrEMBL;Acc:A0A178U6Y1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.