CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER99952
EES07816
KXG31590

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13180.1	KXG31590	AT1G29170.1	17267444
AT1G13180.1	EES07816	AT2G22640.1	17267444
AT1G13180.1	EER99952	AT3G27000.1	17267444

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d050981_P001	Maize	cytosol	97.23	91.72
Os02t0596900-01	Rice	cytosol	90.3	91.36
TraesCS6D01G194100.1	Wheat	cytosol	89.84	91.1
TraesCS6B01G240500.1	Wheat	cytosol	89.84	91.1
TraesCS6A01G211000.1	Wheat	cytosol	89.84	91.1
HORVU6Hr1G053910.4	Barley	cytosol	87.53	85.75
GSMUA_Achr6P21120_001	Banana	cytosol	84.53	85.71
VIT_01s0137g00280.t01	Wine grape	cytosol	83.83	84.81
PGSC0003DMT400027956	Potato	cytosol	81.29	81.67
Solyc05g013940.2.1	Tomato	cytosol	80.83	81.59
KRH59228	Soybean	nucleus	80.6	81.54
Solyc04g024530.2.1	Tomato	cytosol	79.68	80.42
AT1G13180.1	Thale cress	cytosol	78.52	79.63
CDY34585	Canola	cytosol	77.37	78.45
CDY19392	Canola	cytosol	76.91	77.99
CDX98005	Canola	cytosol	76.91	77.99
Bra019815.1-P	Field mustard	cytosol	76.91	77.99
Bra016738.1-P	Field mustard	cytosol	76.67	77.75
CDY21087	Canola	cytosol	76.44	77.52
KRH59222	Soybean	cytosol	33.26	75.0
KXG24330	Sorghum	cytosol	70.21	69.89
KXG21029	Sorghum	cytosol	33.49	38.46
EES08028	Sorghum	cytosol	33.49	38.46
EER93954	Sorghum	cytosol	33.49	38.46
KXG23031	Sorghum	cytosol	33.26	38.2
KXG37705	Sorghum	cytosol	33.26	38.2
EES01810	Sorghum	cytosol	33.03	38.03
EER90564	Sorghum	cytosol	33.03	37.93
EES19603	Sorghum	cytosol	32.56	37.5
EER99952	Sorghum	cytosol	31.18	34.7
KXG21030	Sorghum	cytosol	29.56	32.9
EER91551	Sorghum	cytosol	22.4	26.94
EER93001	Sorghum	cytosol	27.48	26.86
OQU79631	Sorghum	cytosol	24.71	24.77

Protein Annotations

MapMan:20.2.2.1.2	Gene3D:3.30.420.40	Gene3D:3.90.640.10	UniProt:A0A194YRV0	InterPro:Actin	InterPro:Arp3
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005856	GO:GO:0005885	GO:GO:0007015	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	GO:GO:0034314	EnsemblPlants:KXG30555	ProteinID:KXG30555	ProteinID:KXG30555.1	PFAM:PF00022
PANTHER:PTHR11937	PANTHER:PTHR11937:SF258	SMART:SM00268	EnsemblPlantsGene:SORBI_3004G203500	SUPFAM:SSF53067	UniParc:UPI0001C80BF6
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:55519620..55523912

Molecular Weight (calculated)

48390.3 Da

IEP (calculated)

6.353

GRAVY (calculated)

-0.285

Length

433 amino acids

Sequence
(BLAST)

001: MDALSRPAVV IDNGTGYTKM GFAGNVEPCF ITPTVVAVND SFSSSGQPAA RGAPARGNWL AQHSAGVMAD LDFYIGEEAL ARSRASTSHS LSYPIRNGQV
101: ENWDTMERFW QQCIFNYLRC DPEDHYFLLT ESPLTAPETR EYTGEIMFET FNVPGLYIAV QPVLALAAGY TTTKCEMTGV VVDVGDGATH IVPVADGYVI
201: GSSIRSIPIT GKDVTQFVHQ LLKERGENIP PEESFDVARR IKEMYCYTSS DIVKEFNKHD REPSKYVKHW TGIKPKTGAK YTCDIGYERF LGPEIFFNPE
301: IYNNDFTTPL QVVIDKCIQS SPIDTRRALY KNIVLSGGST MFKDFHRRLQ RDLKKIVDAR VRASNSRLIS GDTKAQPIEV NVVSHPIQRY AVWFGGSVLA
401: STAEFYEACH TKAEYEEYGA SICRSNPVFK GMY

Best Arabidopsis Sequence Match ( AT1G13180.1 )
(BLAST)

001: MDPTSRPAIV IDNGTGYTKM GFAGNVEPCF ILPTVVAVNE SFLNQSKSSS KATWQTQHNA GVAADLDFYI GDEALAKSRS SSTHNLHYPI EHGQVEDWDA
101: MERYWQQCIF NYLRCDPEDH YFLLTESPLT PPESREYTGE ILFETFNVPG LYIAVNSVLA LAAGYTTSKC EMTGVVVDVG DGATHVVPVA EGYVIGSCIK
201: SIPIAGKDVT LFIQQLMRER GENIPPEDSF DVARKVKEMY CYTCSDIVKE FNKHDKEPAK YIKQWKGVKP KTGAPYTCDV GYERFLGPEV FFNPEIYSND
301: FTTTLPAVID KCIQSAPIDT RRALYKNIVL SGGSTMFKDF GRRLQRDLKK IVDARVLANN ARTGGEITSQ PVEVNVVSHP VQRFAVWFGG SVLSSTPEFF
401: ASCRTKEEYE EYGASICRTN PVFKGMY

Arabidopsis Description

ARP3Actin-related protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAF1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.