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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX89497
CDX90172
CDY00172
CDY05919
CDY08121
CDY13674
CDY13739
CDY20066
CDY25614
CDY43322
CDY52404

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G13180.1 CDX90172 AT1G29170.1 17267444
AT1G13180.1 CDY43322 AT1G29170.1 17267444
AT1G13180.1 CDX89497 AT2G22640.1 17267444
AT1G13180.1 CDY13739 AT2G22640.1 17267444
AT1G13180.1 CDY25614 AT2G22640.1 17267444
AT1G13180.1 CDY00172 AT3G27000.1 17267444
AT1G13180.1 CDY13674 AT3G27000.1 17267444
AT1G13180.1 CDY20066 AT3G27000.1 17267444
AT1G13180.1 CDY52404 AT3G27000.1 17267444
AT1G13180.1 CDY05919 AT3G49290.1 17267444
AT1G13180.1 CDY08121 AT3G49290.1 17267444
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY21087 Canola cytosol 98.13 98.13
CDX98005 Canola cytosol 96.72 96.72
CDY19392 Canola cytosol 96.49 96.49
AT1G13180.1 Thale cress cytosol 94.38 94.38
VIT_01s0137g00280.t01 Wine grape cytosol 85.48 85.28
KRH59228 Soybean nucleus 83.84 83.64
PGSC0003DMT400027956 Potato cytosol 82.9 82.13
Solyc05g013940.2.1 Tomato cytosol 82.2 81.82
GSMUA_Achr6P21120_001 Banana cytosol 81.26 81.26
Solyc04g024530.2.1 Tomato cytosol 81.5 81.12
Os02t0596900-01 Rice cytosol 80.09 79.91
KRH59222 Soybean cytosol 35.83 79.69
TraesCS6A01G211000.1 Wheat cytosol 79.39 79.39
TraesCS6D01G194100.1 Wheat cytosol 79.39 79.39
TraesCS6B01G240500.1 Wheat cytosol 79.16 79.16
GSMUA_Achr9P07630_001 Banana cytosol 78.45 78.27
Zm00001d017106_P001 Maize cytosol 78.92 77.83
GSMUA_Achr2P05970_001 Banana cytosol 32.08 77.4
KXG30555 Sorghum cytosol 78.45 77.37
HORVU6Hr1G053910.4 Barley cytosol 76.81 74.21
Zm00001d050981_P001 Maize cytosol 78.22 72.77
GSMUA_Achr8P01270_001 Banana cytosol 70.02 70.02
GSMUA_Achr2P05960_001 Banana cytosol 50.12 69.93
KXG24330 Sorghum cytosol 70.96 69.66
Zm00001d049629_P002 Maize nucleus 58.08 67.39
TraesCS7A01G311700.1 Wheat cytosol 67.45 66.06
TraesCS7B01G211500.1 Wheat cytosol 66.98 65.6
Os08t0128300-01 Rice cytosol 26.93 63.89
TraesCS7D01G308200.1 Wheat cytosol 67.45 63.86
HORVU7Hr1G074460.5 Barley cytosol 64.87 63.53
Zm00001d008652_P001 Maize endoplasmic reticulum, plastid 29.98 55.41
CDX85794 Canola cytosol 31.85 38.53
CDY40061 Canola cytosol 31.85 38.53
CDY31972 Canola cytosol 31.85 38.53
CDY30296 Canola cytosol 31.85 38.53
CDX81140 Canola cytosol 33.72 38.2
CDY56544 Canola cytosol 33.72 38.2
CDY21607 Canola cytosol 33.72 38.2
CDX69885 Canola cytosol 33.72 38.2
CDX99315 Canola cytosol 28.81 38.08
CDX73527 Canola cytosol 31.38 37.96
CDX88698 Canola cytosol 33.49 37.93
CDX99111 Canola cytosol 33.49 37.93
CDY53444 Canola cytosol 33.49 37.93
CDX82985 Canola cytosol 33.49 37.93
CDY01102 Canola cytosol 33.49 37.93
CDY38066 Canola cytosol 33.49 37.93
CDX71119 Canola cytosol 33.49 37.93
CDY08455 Canola cytosol 33.49 37.93
CDX86081 Canola cytosol 33.49 37.93
CDY21777 Canola cytosol 33.49 37.93
CDY30846 Canola cytosol 33.26 37.67
CDX76191 Canola cytosol 33.26 37.67
CDX78202 Canola cytosol 33.26 37.67
CDX74944 Canola cytosol 33.26 37.67
CDX91373 Canola cytosol 33.26 37.67
CDY65255 Canola cytosol 29.04 37.46
CDX93360 Canola cytosol 29.04 37.46
CDY07779 Canola cytosol 30.68 37.22
CDX87810 Canola cytosol 32.79 37.14
CDX92271 Canola cytosol 27.4 36.91
CDY48688 Canola cytosol 29.27 36.76
CDX92272 Canola cytosol 31.85 36.07
CDY61982 Canola cytosol 31.85 36.07
CDX82326 Canola cytosol 31.85 36.07
CDY18545 Canola cytosol 31.85 36.07
CDX95498 Canola cytosol 31.85 36.07
CDX94448 Canola cytosol 32.32 35.66
CDX79746 Canola cytosol 30.68 35.22
CDY06885 Canola cytosol 26.0 33.53
CDY14813 Canola cytosol 26.93 32.76
CDY20066 Canola cytosol 29.27 32.13
CDY00172 Canola cytosol 29.27 32.13
CDY52404 Canola cytosol 28.81 31.14
CDY13674 Canola cytosol 28.81 31.14
CDY71336 Canola cytosol 18.27 28.36
CDY26159 Canola cytosol 29.04 28.05
CDY19213 Canola cytosol 29.04 28.05
CDX71774 Canola cytosol 23.42 28.01
CDX67573 Canola cytosol 19.91 27.96
CDX96721 Canola cytosol 28.57 27.85
CDY56730 Canola cytosol 23.42 27.78
CDX67843 Canola cytosol 23.18 27.5
CDX83847 Canola cytosol 28.1 27.33
CDY62715 Canola cytosol 23.18 27.27
CDY52344 Canola cytosol 23.89 25.31
CDY42404 Canola cytosol 25.06 25.06
CDY33033 Canola nucleus 27.17 21.44
CDX80274 Canola nucleus 26.46 20.58
Protein Annotations
MapMan:20.2.2.1.2Gene3D:3.30.420.40Gene3D:3.90.640.10UniProt:A0A078H7V3InterPro:ActinInterPro:Arp3
EnsemblPlants:CDY34585ProteinID:CDY34585ProteinID:CDY34585.1GO:GO:0000166GO:GO:0003674GO:GO:0005488
GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005856GO:GO:0005885
GO:GO:0007015GO:GO:0008150GO:GO:0009987GO:GO:0016043GO:GO:0034314EnsemblPlantsGene:GSBRNA2T00057025001
PFAM:PF00022PANTHER:PTHR11937PANTHER:PTHR11937:SF258SMART:SM00268SUPFAM:SSF53067UniParc:UPI0004EEAE79
SEG:seg:::::
Description
BnaC03g56850DBnaC03g56850D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H7V3]
Coordinates
chrLK032337:-:307353..310140
Molecular Weight (calculated)
47520.4 Da
IEP (calculated)
5.208
GRAVY (calculated)
-0.254
Length
427 amino acids
Sequence
(BLAST)
001: MDPTSRPAVV IDNGTGYTKM GFAGNVEPCF ILPTVVAANE SFLSQPKSSL KGTWAAQHNA GVAADMDFFI GDEALAKSRS SSTYNLRYPI EHGQVEDWDA
101: MERYWQQCVF NYLRCDPEDH YFLLTESPLT PPESREYTGE ILFETFNVPG LYIAVNSVLA LAAGYTTSKC EMTGVVVDVG DGATRVVPVA EGYVISSCIK
201: SIPIAGKDVT LFIQQLMRER GENIPPEDSF DVARKVKEMY CYTSSDIVKE YNKHDKEPGK YVKQWKGVKP KTGAPYTCDV GYERFLGPEV FFNPEIYSND
301: FITSLPAVID KCIQSAPIDT RRALYKNIVL SGGSTMFKDF GRRLQRDLKK IVDARVLANN ARTGGEITSQ PLEVNVVSHP VQRFAVWFGG SVLSSTPEFF
401: ASCRTKEEYD ECGASICRTN PVFKGMY
Best Arabidopsis Sequence Match ( AT1G13180.1 )
(BLAST)
001: MDPTSRPAIV IDNGTGYTKM GFAGNVEPCF ILPTVVAVNE SFLNQSKSSS KATWQTQHNA GVAADLDFYI GDEALAKSRS SSTHNLHYPI EHGQVEDWDA
101: MERYWQQCIF NYLRCDPEDH YFLLTESPLT PPESREYTGE ILFETFNVPG LYIAVNSVLA LAAGYTTSKC EMTGVVVDVG DGATHVVPVA EGYVIGSCIK
201: SIPIAGKDVT LFIQQLMRER GENIPPEDSF DVARKVKEMY CYTCSDIVKE FNKHDKEPAK YIKQWKGVKP KTGAPYTCDV GYERFLGPEV FFNPEIYSND
301: FTTTLPAVID KCIQSAPIDT RRALYKNIVL SGGSTMFKDF GRRLQRDLKK IVDARVLANN ARTGGEITSQ PVEVNVVSHP VQRFAVWFGG SVLSSTPEFF
401: ASCRTKEEYE EYGASICRTN PVFKGMY
Arabidopsis Description
ARP3Actin-related protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAF1]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.