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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol
BaCelLo:cytosol
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX98005
CDY19392
CDY21087
CDY34585

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G27000.1 CDX98005 AT1G13180.1 17267444
AT3G27000.1 CDY19392 AT1G13180.1 17267444
AT3G27000.1 CDY21087 AT1G13180.1 17267444
AT3G27000.1 CDY34585 AT1G13180.1 17267444
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra039097.1-P Field mustard cytosol 99.74 99.74
CDY20066 Canola cytosol 99.74 99.74
AT3G27000.1 Thale cress cytosol 98.71 98.71
CDY13674 Canola cytosol 98.2 96.71
CDY52404 Canola cytosol 97.94 96.46
KRH06905 Soybean cytosol 93.06 93.06
KRG94584 Soybean cytosol 93.06 93.06
VIT_14s0068g01630.t01 Wine grape cytosol 92.03 92.03
Solyc02g094320.2.1 Tomato cytosol 89.97 89.97
GSMUA_AchrUn_... Banana cytosol 89.72 89.72
Zm00001d022558_P001 Maize cytosol 89.46 89.46
EER99952 Sorghum cytosol 89.2 89.2
TraesCS3D01G362400.1 Wheat cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 86.38 86.38
PGSC0003DMT400052197 Potato cytosol 86.12 83.96
TraesCS3A01G369400.1 Wheat cytosol 86.12 83.75
TraesCS3B01G401300.2 Wheat cytosol 85.86 80.29
HORVU4Hr1G007240.3 Barley cytosol 85.09 70.58
CDX92271 Canola cytosol 38.82 47.63
CDX73527 Canola cytosol 42.16 46.46
CDY31972 Canola cytosol 42.16 46.46
CDY30296 Canola cytosol 42.16 46.46
CDX85794 Canola cytosol 41.9 46.18
CDY40061 Canola cytosol 41.9 46.18
CDY65255 Canola cytosol 39.07 45.92
CDX93360 Canola cytosol 38.56 45.32
CDX76191 Canola cytosol 43.7 45.09
CDX78202 Canola cytosol 43.7 45.09
CDY30846 Canola cytosol 43.7 45.09
CDX81140 Canola cytosol 43.7 45.09
CDY56544 Canola cytosol 43.7 45.09
CDY21607 Canola cytosol 43.44 44.83
CDX69885 Canola cytosol 43.44 44.83
CDY01102 Canola cytosol 43.19 44.56
CDY61982 Canola cytosol 42.93 44.3
CDX74944 Canola cytosol 42.93 44.3
CDY18545 Canola cytosol 42.93 44.3
CDY08455 Canola cytosol 42.93 44.3
CDX82326 Canola cytosol 42.93 44.3
CDX91373 Canola cytosol 42.93 44.3
CDX92272 Canola cytosol 42.93 44.3
CDX95498 Canola cytosol 42.93 44.3
CDY07779 Canola cytosol 39.85 44.03
CDX99111 Canola cytosol 42.67 44.03
CDY53444 Canola cytosol 42.67 44.03
CDX82985 Canola cytosol 42.67 44.03
CDX86081 Canola cytosol 42.67 44.03
CDX71119 Canola cytosol 42.67 44.03
CDX88698 Canola cytosol 42.67 44.03
CDY38066 Canola cytosol 42.42 43.77
CDY21777 Canola cytosol 42.42 43.77
CDX99315 Canola cytosol 36.25 43.65
CDX87810 Canola cytosol 41.9 43.24
CDY48688 Canola cytosol 37.79 43.24
CDX79746 Canola cytosol 39.85 41.67
CDX94448 Canola cytosol 40.62 40.83
CDY14813 Canola cytosol 35.48 39.32
CDY06885 Canola cytosol 32.9 38.67
CDY71336 Canola cytosol 25.71 36.36
CDX67573 Canola cytosol 28.28 36.18
CDY34585 Canola cytosol 32.13 29.27
CDY21087 Canola cytosol 31.88 29.04
CDX98005 Canola cytosol 31.36 28.57
CDY19392 Canola cytosol 30.85 28.1
CDX83847 Canola cytosol 31.11 27.56
CDX71774 Canola cytosol 24.94 27.17
CDY26159 Canola cytosol 30.85 27.15
CDY19213 Canola cytosol 30.85 27.15
CDX96721 Canola cytosol 30.08 26.71
CDY62715 Canola cytosol 24.68 26.45
CDY56730 Canola cytosol 24.42 26.39
CDX67843 Canola cytosol 24.42 26.39
CDY42404 Canola cytosol 27.76 25.29
CDY33033 Canola nucleus 34.7 24.95
CDY52344 Canola cytosol 25.19 24.32
CDX80274 Canola nucleus 34.19 24.23
Protein Annotations
MapMan:20.2.2.1.1Gene3D:3.30.420.40Gene3D:3.90.640.10GO:A0A078EGF9InterPro:ActinInterPro:Arp2
EnsemblPlants:CDY00172ProteinID:CDY00172ProteinID:CDY00172.1GO:GO:0000166GO:GO:0003674GO:GO:0005488
GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005856GO:GO:0005885
GO:GO:0007015GO:GO:0008150GO:GO:0009987GO:GO:0016043GO:GO:0034314EnsemblPlantsGene:GSBRNA2T00109689001
PFAM:PF00022PRINTS:PR00190PANTHER:PTHR11937PANTHER:PTHR11937:SF149SMART:SM00268SUPFAM:SSF53067
UniParc:UPI0004EAC555:::::
Description
BnaC09g01290D
Coordinates
chrLK031916:+:1157148..1160047
Molecular Weight (calculated)
44403.7 Da
IEP (calculated)
5.328
GRAVY (calculated)
-0.276
Length
389 amino acids
Sequence
(BLAST)
001: MDNKNVVVCD NGTGYVKCGF AGENFPTSVF PCVVGRPLLR YEESLMEQQV KDIVVGETCA ELRHQLDINY PVHNGIVQNW EDMEHVWDHA FYNELKINPS
101: DCKILLTDPP LNPSKNREKM IETMFEKYNF AGVFIQIQAV LTLYAQGLLT GLVIDSGDGV THVVPVVDGY SFPHLTKRMN VAGRHITAYL VDLLSRRGYA
201: MNKTADFETV REIKEKLCYI SYDYKREYQL GLETTILVKN YTLPDGRVIK VGTERFQAPE ALFTPELIDV EGDGMADMVF RCIQEMDIDN RMMLYQHIVL
301: SGGSTMYPGL PSRLEKEIQD RYLDTVLKGN RDGLKKLRLR IEDPPRRKHM VYLGGAVLAG IMKDAPEFWI NREDYMEEGI GCLNKMSQA
Best Arabidopsis Sequence Match ( AT3G27000.1 )
(BLAST)
001: MDNKNVVVCD NGTGYVKCGF AGENFPTSVF PCVVGRPLLR YEESLMEQQV KDIVVGETCS ELRHQLDINY PVHNGIVQNW DDMEHVWDHA FYNELKINPS
101: DCKILLTDPP LNPSKNREKM IETMFEKYNF AGVFIQIQAV LTLYAQGLLT GLVIDSGDGV THVVPVVDGY SFPHLTKRMN VAGRHITAYL VDLLSRRGYA
201: MNKTADFETV REIKEKLCYI SYDYKRESQL GLETTILVKN YTLPDGRVIK VGTERFQAPE ALFTPELIDV EGDGMADMVF RCIQEMDIDN RMMLYQHIVL
301: SGGSTMYPGL PSRLEKEIQD RYLDTVLKGN KDGLKKLRLR IEDPPRRKHM VYLGGAVLAG IMKDAPEFWI NREDYMEEGI NCLNKMSQA
Arabidopsis Description
ARP2Actin-related protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSD6]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.