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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX80274 Canola nucleus 97.41 95.99
CDY48688 Canola cytosol 56.56 90.0
GSMUA_Achr10P... Banana cytosol 40.3 82.89
CDX99111 Canola cytosol 56.93 81.7
CDY21777 Canola cytosol 56.93 81.7
CDX88698 Canola cytosol 56.93 81.7
CDX71119 Canola cytosol 56.93 81.7
CDX86081 Canola cytosol 56.93 81.7
CDX82985 Canola cytosol 56.75 81.43
CDY38066 Canola cytosol 56.75 81.43
AT5G59370.2 Thale cress cytosol 56.56 81.17
CDY53444 Canola cytosol 56.56 81.17
GSMUA_Achr7P18630_001 Banana cytosol 47.13 79.69
VIT_13s0019g01240.t01 Wine grape cytosol 55.27 79.31
KRH10268 Soybean mitochondrion, nucleus 55.27 79.31
CDX74944 Canola cytosol 55.08 79.05
CDX91373 Canola cytosol 55.08 79.05
KRH38098 Soybean cytosol 55.08 79.05
CDX73527 Canola cytosol 51.57 79.04
KRH23061 Soybean endoplasmic reticulum, mitochondrion, nucleus 54.9 78.78
CDX78202 Canola cytosol 54.9 78.78
KRH71847 Soybean endoplasmic reticulum, nucleus 54.9 78.78
KRG95386 Soybean cytosol 54.71 78.51
KRH29804 Soybean endoplasmic reticulum, mitochondrion, nucleus 54.71 78.51
CDX76191 Canola cytosol 54.71 78.51
KRH67068 Soybean endoplasmic reticulum, mitochondrion, nucleus 54.71 78.51
KRH70465 Soybean mitochondrion, nucleus 54.71 78.51
KRH01660 Soybean mitochondrion, nucleus 54.71 78.51
KRG93168 Soybean mitochondrion, nucleus 54.53 78.25
KRH56507 Soybean endoplasmic reticulum, mitochondrion 54.53 78.25
VIT_08s0007g06520.t01 Wine grape cytosol 54.53 78.25
VIT_06s0004g04570.t01 Wine grape cytosol 54.34 78.19
CDX99315 Canola cytosol 46.58 78.02
CDY01102 Canola cytosol 54.34 77.98
GSMUA_AchrUn_... Banana plasma membrane 54.34 77.98
CDY08455 Canola cytosol 54.34 77.98
CDY30846 Canola cytosol 54.34 77.98
CDY07779 Canola cytosol 50.65 77.84
CDY65255 Canola cytosol 47.5 77.64
CDX93360 Canola cytosol 47.32 77.34
CDY40061 Canola cytosol 50.28 77.05
CDY31972 Canola cytosol 50.28 77.05
CDY30296 Canola cytosol 50.28 77.05
CDX85794 Canola cytosol 50.28 77.05
CDY21607 Canola cytosol 53.6 76.92
CDX69885 Canola cytosol 53.6 76.92
Solyc10g086460.1.1 Tomato unclear 53.42 76.66
CDX81140 Canola cytosol 53.23 76.39
CDY56544 Canola cytosol 53.23 76.39
PGSC0003DMT400049429 Potato cytosol 53.23 76.39
PGSC0003DMT400023026 Potato cytosol 52.87 75.86
CDX94448 Canola cytosol 53.23 74.42
CDX87810 Canola cytosol 51.57 74.01
Solyc09g010750.1.1 Tomato cytosol 24.4 73.74
CDX92272 Canola cytosol 51.39 73.74
CDX95498 Canola cytosol 51.39 73.74
CDY61982 Canola cytosol 51.39 73.74
CDY18545 Canola cytosol 51.39 73.74
CDX79746 Canola cytosol 50.65 73.66
CDX82326 Canola cytosol 51.2 73.47
CDX92271 Canola cytosol 41.22 70.35
KRH24799 Soybean cytosol 52.13 68.78
CDY71336 Canola cytosol 33.46 65.82
CDX67573 Canola cytosol 35.67 63.49
CDY14813 Canola cytosol 37.34 57.55
CDY06885 Canola cytosol 34.2 55.89
Bra002571.1-P Field mustard nucleus 57.86 51.74
CDY00172 Canola cytosol 24.95 34.7
CDY20066 Canola cytosol 24.95 34.7
CDY52404 Canola cytosol 25.14 34.43
CDY13674 Canola cytosol 25.14 34.43
CDY62715 Canola cytosol 21.63 32.23
CDY56730 Canola cytosol 21.44 32.22
CDX67843 Canola cytosol 21.44 32.22
CDX71774 Canola cytosol 20.89 31.65
CDY26159 Canola cytosol 24.95 30.54
CDY19213 Canola cytosol 24.95 30.54
CDX83847 Canola cytosol 24.77 30.52
CDX96721 Canola cytosol 24.58 30.37
CDY52344 Canola cytosol 21.81 29.28
CDY21087 Canola cytosol 21.63 27.4
CDY34585 Canola cytosol 21.44 27.17
CDX98005 Canola cytosol 21.44 27.17
CDY19392 Canola cytosol 21.26 26.93
CDY42404 Canola cytosol 17.56 22.25
Protein Annotations
MapMan:12.5.4.2MapMan:20.2.1Gene3D:3.30.420.40Gene3D:3.30.890.10Gene3D:3.90.640.10GO:A0A078H869
UniProt:A0A078H869InterPro:ActinInterPro:Actin/actin-like_CSInterPro:Actin_CSEnsemblPlants:CDY33033ProteinID:CDY33033
ProteinID:CDY33033.1InterPro:DNA-bd_dom_sfGO:GO:0000166GO:GO:0003674GO:GO:0003676GO:GO:0003677
GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
EnsemblPlantsGene:GSBRNA2T00053267001InterPro:IPR001739InterPro:Methyl_CpG_DNA-bdPFAM:PF00022PFAM:PF01429PRINTS:PR00190
ScanProsite:PS00432ScanProsite:PS01132PFscan:PS50982PANTHER:PTHR11937PANTHER:PTHR11937:SF276SMART:SM00268
SUPFAM:SSF53067SUPFAM:SSF54171UniParc:UPI0004EF2D1ASEG:seg::
Description
BnaA10g12390DBnaA10g12390D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H869]
Coordinates
chrLK032304:+:365639..369403
Molecular Weight (calculated)
59812.8 Da
IEP (calculated)
9.213
GRAVY (calculated)
-0.647
Length
541 amino acids
Sequence
(BLAST)
001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKREHPVLL TEAPLNPKAN REKMTQIMFE TFNTPAMYVA
101: IQAVLSLYAS GRTTGIVLDS GDGVSHTVPI YEERGYSFTT TAEREIVRDM KEKLSYIALD YEQELETSNT SSSVEKSFEL PDGQVITIGA ERFRCPEVLF
201: QPSMIGMENP GIHETTYNSI MKCDVDIRKD LYGNIVLSGG TTMFGGIGDR MSKEITALAP SSMKIKVVAP PERKYSVWIG GSILASLSTF QQMWIAKAEY
301: DESGPSIVHR KLKPGNRKNQ TTILKHHKDP SSKSLPIKSA NLIGDEQQES LIQGRKRRSN WLRGESVRIG MSNGTEQTRK RAAPGDSNWL PPGWRVEDKV
401: RTSGATAGSV DKYYYEPITG RKFRSKTEVL YYLEHGTSKK GSKKPDNTDS SSDHLEGQGS NKSSRKAKEP TPPPRPRSPP LKFDFENPPE KVSWSAANAG
501: GEGWTPFVGD DKVQDSLRRE WCTAFNVITT KNPTKLSSLR R
Best Arabidopsis Sequence Match ( AT2G37620.4 )
(BLAST)
001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVNN WDDMEKIWHH TFYNELRVAP
101: EEHPILLTEA PLNPKANREK MTQIMFETFN APAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDA LMKILTERGY
201: SFTTTAEREI VRDIKEKLCY IALDYEQELE TAKTSSSVEK NYELPDGQVI TIGSERFRCP EVLYQPSMIG MENAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF
Arabidopsis Description
ACT1Actin-3 [Source:UniProtKB/Swiss-Prot;Acc:P0CJ47]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.