CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g010750.1.1	Tomato	cytosol	49.45	75.98
CDX73527	Canola	cytosol	78.91	61.47
CDY48688	Canola	cytosol	75.64	61.18
CDY65255	Canola	cytosol	70.18	58.31
AT3G53750.2	Thale cress	cytosol	79.64	58.09
CDY30296	Canola	cytosol	74.55	58.07
CDX85794	Canola	cytosol	74.55	58.07
CDY40061	Canola	cytosol	74.55	58.07
CDY31972	Canola	cytosol	74.55	58.07
CDX93360	Canola	cytosol	69.82	58.01
CDX76191	Canola	cytosol	79.27	57.82
CDX78202	Canola	cytosol	78.91	57.56
CDY30846	Canola	cytosol	78.91	57.56
CDX74944	Canola	cytosol	77.82	56.76
CDX91373	Canola	cytosol	77.82	56.76
GSMUA_AchrUn_...	Banana	plasma membrane	77.45	56.5
VIT_06s0004g04570.t01	Wine grape	cytosol	76.73	56.12
KRH10268	Soybean	mitochondrion, nucleus	76.73	55.97
KRH56507	Soybean	endoplasmic reticulum, mitochondrion	76.36	55.7
VIT_08s0007g06520.t01	Wine grape	cytosol	76.36	55.7
KRH29804	Soybean	endoplasmic reticulum, mitochondrion, nucleus	76.36	55.7
KRH23061	Soybean	endoplasmic reticulum, mitochondrion, nucleus	76.0	55.44
KRG93168	Soybean	mitochondrion, nucleus	76.0	55.44
KRH38098	Soybean	cytosol	76.0	55.44
CDX82985	Canola	cytosol	76.0	55.44
VIT_13s0019g01240.t01	Wine grape	cytosol	75.64	55.17
CDY21777	Canola	cytosol	75.64	55.17
CDX99111	Canola	cytosol	75.64	55.17
CDX88698	Canola	cytosol	75.64	55.17
CDX86081	Canola	cytosol	75.64	55.17
CDX71119	Canola	cytosol	75.64	55.17
KRH71847	Soybean	endoplasmic reticulum, nucleus	75.64	55.17
CDY38066	Canola	cytosol	75.64	55.17
CDY53444	Canola	cytosol	75.64	55.17
KRH01660	Soybean	mitochondrion, nucleus	75.27	54.91
KRG95386	Soybean	cytosol	75.27	54.91
KRH70465	Soybean	mitochondrion, nucleus	75.27	54.91
KRH67068	Soybean	endoplasmic reticulum, mitochondrion, nucleus	75.27	54.91
CDX94448	Canola	cytosol	77.09	54.78
CDY08455	Canola	cytosol	74.91	54.64
CDY01102	Canola	cytosol	74.91	54.64
CDX92271	Canola	cytosol	62.91	54.57
CDY07779	Canola	cytosol	69.82	54.55
CDY56544	Canola	cytosol	74.55	54.38
CDY21607	Canola	cytosol	74.55	54.38
CDX69885	Canola	cytosol	74.55	54.38
CDX81140	Canola	cytosol	74.55	54.38
PGSC0003DMT400023026	Potato	cytosol	73.82	53.85
Solyc10g086460.1.1	Tomato	unclear	73.45	53.58
PGSC0003DMT400049429	Potato	cytosol	73.45	53.58
CDX95498	Canola	cytosol	73.09	53.32
CDY61982	Canola	cytosol	73.09	53.32
CDX92272	Canola	cytosol	73.09	53.32
CDY18545	Canola	cytosol	73.09	53.32
CDX82326	Canola	cytosol	72.73	53.05
CDX87810	Canola	cytosol	72.36	52.79
CDX79746	Canola	cytosol	69.82	51.61
KRH24799	Soybean	cytosol	74.55	50.0
CDX99315	Canola	cytosol	56.0	47.68
GSMUA_Achr10P...	Banana	cytosol	45.45	47.53
GSMUA_Achr7P18630_001	Banana	cytosol	52.36	45.0
CDY14813	Canola	cytosol	56.73	44.44
CDX67573	Canola	cytosol	48.36	43.75
CDY06885	Canola	cytosol	49.45	41.09
CDY33033	Canola	nucleus	65.82	33.46
CDX80274	Canola	nucleus	65.45	32.79
CDY00172	Canola	cytosol	36.36	25.71
CDY20066	Canola	cytosol	36.36	25.71
CDY13674	Canola	cytosol	36.73	25.57
CDY52404	Canola	cytosol	36.73	25.57
CDY62715	Canola	cytosol	32.0	24.24
CDY56730	Canola	cytosol	31.27	23.89
CDX67843	Canola	cytosol	31.27	23.89
CDX71774	Canola	cytosol	30.55	23.53
CDY52344	Canola	cytosol	32.0	21.84
CDX83847	Canola	cytosol	33.09	20.73
CDY26159	Canola	cytosol	33.09	20.59
CDY19213	Canola	cytosol	33.09	20.59
CDX96721	Canola	cytosol	32.73	20.55
CDY34585	Canola	cytosol	28.36	18.27
CDY21087	Canola	cytosol	28.0	18.03
CDY19392	Canola	cytosol	27.64	17.8
CDX98005	Canola	cytosol	27.64	17.8
CDY42404	Canola	cytosol	25.82	16.63

Protein Annotations

EnsemblPlants:CDY71336	EnsemblPlantsGene:GSBRNA2T00014206001	Gene3D:3.30.420.40	Gene3D:3.30.420.520	Gene3D:3.90.640.10	InterPro:Actin
PANTHER:PTHR11937	PANTHER:PTHR11937:SF276	PFAM:PF00022	PRINTS:PR00190	ProteinID:CDY71336	ProteinID:CDY71336.1
SEG:seg	SMART:SM00268	SUPFAM:SSF53067	UniParc:UPI0004EDD718	UniProt:A0A078K0M7	MapMan:20.2.1

Description

BnaAnng36990DBnaAnng36990D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078K0M7]

Coordinates

chrLK045432:-:3..2092

Molecular Weight (calculated)

30285.6 Da

IEP (calculated)

5.162

GRAVY (calculated)

-0.093

Length

275 amino acids

Sequence
(BLAST)

001: MNQIMFETFN APAMYVAIQA VLSLYASGRT TGIVLDSGDG ASHTVPIYEG YALPHAILRL DLAGHDLTDA LMKILTERGY SFTTTAEREI VRDIKEKLCY
101: IALDYEQELE TSKTSSSVEK NYELPDGQVI TIGSERFRCP EVLYQPSMIG MENAGIHETT YNSIMKCDVD IRKDLYGHIV LSGGTTMFPG IADRMSKEIT
201: ALAPSSMKIK VVAPPGGNTL SGLEDLSWPL SVPSSRCGLQ RLNMMSQAHR LSTGNAFEFD LKLSLLLEKP LCTNK

Best Arabidopsis Sequence Match ( AT2G37620.1 )
(BLAST)

001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVNN WDDMEKIWHH TFYNELRVAP
101: EEHPILLTEA PLNPKANREK MTQIMFETFN APAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDA LMKILTERGY
201: SFTTTAEREI VRDIKEKLCY IALDYEQELE TAKTSSSVEK NYELPDGQVI TIGSERFRCP EVLYQPSMIG MENAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF

Arabidopsis Description

ACT1Actin-3 [Source:UniProtKB/Swiss-Prot;Acc:P0CJ47]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.