Skip to main content
crop-pal logo
Soybean
Search for another protein from :
Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, nucleus

Predictor Summary:
  • cytosol 5
  • mitochondrion 1
  • cytoskeleton 1
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion, nucleus
Any Predictor:cytoskeleton, cytosol, mitochondrion
BaCelLo:cytosol
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytoskeleton
YLoc:cytosol
 nucleus: 21132161
mitochondrion: 25806999
endoplasmic reticulum: 27224218
nucleus: 27291164
mitochondrion: 28499913
msms PMID: 25806999 doi
AH Kamal, S Komatsu
National Institute of Crop Science, National Agriculture and Food Research Organization, Kannondai 2-1-18, Tsukuba 305-8518, Japan.
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27291164 doi
X Yin, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI

Inferred distinct locusB in Crop

locusBlocations
KRG93168
KRG95386
KRH01660
KRH04597
KRH10268
KRH23061
KRH24799
KRH28456
KRH29804
KRH38098
KRH56507
KRH57934
KRH63322
KRH67068
KRH70465
KRH71847
KRH77015

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G37620.1 KRH04597 AT2G23420.1 21798944
AT2G37620.1 KRH28456 AT2G23420.1 21798944
AT2G37620.1 KRH57934 AT2G23420.1 21798944
AT2G37620.1 KRH63322 AT2G23420.1 21798944
AT2G37620.1 KRH77015 AT2G23420.1 21798944
AT2G37620.1 KRG93168 AT2G37620.1 21798944
AT2G37620.1 KRG95386 AT2G37620.1 21798944
AT2G37620.1 KRH01660 AT2G37620.1 21798944
AT2G37620.1 KRH10268 AT2G37620.1 21798944
AT2G37620.1 KRH23061 AT2G37620.1 21798944
AT2G37620.1 KRH24799 AT2G37620.1 21798944
AT2G37620.1 KRH29804 AT2G37620.1 21798944
AT2G37620.1 KRH38098 AT2G37620.1 21798944
AT2G37620.1 KRH56507 AT2G37620.1 21798944
AT2G37620.1 KRH67068 AT2G37620.1 21798944
AT2G37620.1 KRH70465 AT2G37620.1 21798944
AT2G37620.1 KRH71847 AT2G37620.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH01660 Soybean mitochondrion, nucleus 99.73 99.73
Solyc04g011500.2.1 Tomato extracellular, nucleus, plastid, unclear 97.88 97.88
PGSC0003DMT400071331 Potato cytosol 97.61 97.61
KRH56507 Soybean endoplasmic reticulum, mitochondrion 97.61 97.61
AT3G12110.1 Thale cress cytosol 97.35 97.35
VIT_13s0019g01240.t01 Wine grape cytosol 97.35 97.35
Solyc05g054480.2.1 Tomato extracellular, nucleus, plastid, unclear 97.35 97.35
KRH10268 Soybean mitochondrion, nucleus 97.35 97.35
KRG93168 Soybean mitochondrion, nucleus 97.35 97.35
KRH29804 Soybean endoplasmic reticulum, mitochondrion, nucleus 97.08 97.08
PGSC0003DMT400077954 Potato cytosol 97.08 97.08
KRH38098 Soybean cytosol 96.82 96.82
Solyc11g065990.1.1 Tomato nucleus, plastid, unclear 96.82 96.82
KRH67068 Soybean endoplasmic reticulum, mitochondrion, nucleus 96.82 96.82
Solyc06g076090.2.1 Tomato unclear 96.82 96.82
KRG95386 Soybean cytosol 96.82 96.82
PGSC0003DMT400060225 Potato cytosol 96.82 96.82
KRH23061 Soybean endoplasmic reticulum, mitochondrion, nucleus 96.82 96.82
GSMUA_Achr10P... Banana cytosol 67.37 96.58
CDY01102 Canola cytosol 96.55 96.55
KRH71847 Soybean endoplasmic reticulum, nucleus 96.55 96.55
Bra034778.1-P Field mustard cytosol 96.55 96.55
CDX99111 Canola cytosol 96.29 96.29
CDY38066 Canola cytosol 96.29 96.29
CDY08455 Canola cytosol 96.29 96.29
CDY21777 Canola cytosol 96.29 96.29
GSMUA_AchrUn_... Banana plasma membrane 96.29 96.29
CDX88698 Canola cytosol 96.29 96.29
CDX86081 Canola cytosol 96.29 96.29
CDX71119 Canola cytosol 96.29 96.29
AT3G46520.2 Thale cress cytosol 96.29 96.29
Bra019486.1-P Field mustard cytosol 96.29 96.29
Bra018210.1-P Field mustard cytosol 96.29 96.29
Bra006719.1-P Field mustard cytosol 84.62 96.08
KRH43389 Soybean cytosol 96.02 96.02
KRH59535 Soybean cytosol 96.02 96.02
AT5G59370.2 Thale cress cytosol 96.02 96.02
AT3G53750.2 Thale cress cytosol 96.02 96.02
AT2G37620.1 Thale cress cytosol 96.02 96.02
Bra007025.1-P Field mustard cytosol 96.02 96.02
Bra014865.1-P Field mustard cytosol 96.02 96.02
Bra033819.1-P Field mustard cytosol 96.02 96.02
CDX76191 Canola cytosol 96.02 96.02
CDX78202 Canola cytosol 96.02 96.02
CDX82985 Canola cytosol 96.02 96.02
CDY53444 Canola cytosol 95.76 95.76
KRH64098 Soybean cytosol 95.76 95.76
CDX73527 Canola cytosol 89.66 95.75
CDY48688 Canola cytosol 86.21 95.59
Bra020319.1-P Field mustard cytosol 86.21 95.59
PGSC0003DMT400001169 Potato cytosol 95.76 95.5
CDY30846 Canola cytosol 95.49 95.49
KRH53856 Soybean endoplasmic reticulum, mitochondrion 84.08 95.48
CDX74944 Canola cytosol 95.23 95.23
Bra000010.1-P Field mustard cytosol 95.23 95.23
Bra017166.1-P Field mustard cytosol 95.23 95.23
CDX91373 Canola cytosol 95.23 95.23
CDY65255 Canola cytosol 83.29 94.86
CDX93360 Canola cytosol 83.29 94.86
CDY07779 Canola cytosol 88.33 94.6
Bra005178.1-P Field mustard cytosol 88.59 94.35
KRH10484 Soybean endoplasmic reticulum, mitochondrion, nucleus 93.63 93.63
KRH43946 Soybean endoplasmic reticulum, mitochondrion, nucleus 93.37 93.37
GSMUA_Achr7P18630_001 Banana cytosol 78.51 92.5
CDX94448 Canola cytosol 92.31 89.92
CDX79746 Canola cytosol 88.33 89.52
Bra003156.1-P Field mustard cytosol 48.28 88.35
KRH24799 Soybean cytosol 93.1 85.61
CDY71336 Canola cytosol 54.91 75.27
CDX67573 Canola cytosol 55.44 68.75
Bra002571.1-P Field mustard nucleus 96.02 59.83
CDY33033 Canola nucleus 78.51 54.71
CDX80274 Canola nucleus 77.19 53.01
KRG94584 Soybean cytosol 44.03 42.67
KRH06905 Soybean cytosol 43.5 42.16
KRH39934 Soybean cytosol 33.95 38.79
KRH13968 Soybean cytosol, nucleus 37.14 38.78
KRH32953 Soybean cytosol 36.87 38.5
KRH23861 Soybean cytosol, nucleus 36.87 38.5
KRH66446 Soybean nucleus 42.71 36.18
KRH48882 Soybean nucleus 42.18 35.65
KRH41617 Soybean nucleus 40.58 35.5
KRH59222 Soybean cytosol 18.04 35.42
KRH59228 Soybean nucleus 37.93 33.41
KRH61849 Soybean cytosol, nucleus 33.69 29.13
Protein Annotations
EntrezGene:100781831MapMan:20.2.1Gene3D:3.30.420.40Gene3D:3.90.640.10EMBL:ACUP02000775InterPro:Actin
InterPro:Actin/actin-like_CSInterPro:Actin_CSEMBL:BT097721UniProt:C6TJ78EnsemblPlantsGene:GLYMA_02G091900GO:GO:0000166
GO:GO:0003674GO:GO:0005488GO:GO:0005524EnsemblPlants:KRH70465ProteinID:KRH70465ProteinID:KRH70465.1
PFAM:PF00022PRINTS:PR00190ScanProsite:PS00406ScanProsite:PS00432ScanProsite:PS01132PANTHER:PTHR11937
PANTHER:PTHR11937:SF364SMART:SM00268SUPFAM:SSF53067UniParc:UPI0001B16F6B::
Description
hypothetical protein
Coordinates
chr2:-:8146062..8149820
Molecular Weight (calculated)
41837.2 Da
IEP (calculated)
5.057
GRAVY (calculated)
-0.195
Length
377 amino acids
Sequence
(BLAST)
001: MADTEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVSN WDDMEKIWHH TFYNELRVAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN TPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDF LMKILTERGY
201: SFTTSAEREI VRDVKEKLSY IALDYEQELE TARTSSSVEK SYELPDGQVI TIGDERFRCP EVLFQPSMIG MEASGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIS ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF
Best Arabidopsis Sequence Match ( AT3G12110.1 )
(BLAST)
001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVSN WDDMEKIWHH TFYNELRVAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN TPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDY LMKILTERGY
201: SFTTSAEREI VRDVKEKLAY IALDYEQEME TANTSSSVEK SYELPDGQVI TIGGERFRCP EVLFQPSLVG MEAAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF
Arabidopsis Description
ACT11Actin-11 [Source:UniProtKB/Swiss-Prot;Acc:P53496]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.