CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89345
KRG90054
KRG90981
KRG91074
KRG92959
KRH01583
KRH01584
KRH04023
KRH09910
KRH11716
KRH11776
KRH12470
KRH23421
KRH24096
KRH28027
KRH28403
KRH29070
KRH33288
KRH35699
KRH35776
KRH36208
KRH36511
KRH36711
KRH36782
KRH42209
KRH42810
KRH50391
KRH52686
KRH58335
KRH58897
KRH62026
KRH69588
KRH70518
KRH71626
KRH74571
KRH76336
KRH77072
KRH77406

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G23420.1	KRH04023	AT1G12310.1	21798944
AT2G23420.1	KRH28027	AT1G12310.1	21798944
AT2G23420.1	KRH77406	AT1G12310.1	21798944
AT2G23420.1	KRG90981	AT1G14640.1	21798944
AT2G23420.1	KRH12470	AT1G14640.1	21798944
AT2G23420.1	KRH35776	AT1G14640.1	21798944
AT2G23420.1	KRH36511	AT1G14640.1	21798944
AT2G23420.1	KRH33288	AT1G49590.1	21798944
AT2G23420.1	KRH71626	AT1G49590.1	21798944
AT2G23420.1	KRH76336	AT1G49590.1	21798944
AT2G23420.1	KRH24096	AT1G50450.1	21798944
AT2G23420.1	KRH29070	AT1G50450.1	21798944
AT2G23420.1	KRH11716	AT1G55270.1	21798944
AT2G23420.1	KRH36711	AT1G55270.1	21798944
AT2G23420.1	KRH42810	AT1G55270.1	21798944
AT2G23420.1	KRH58897	AT1G55270.1	21798944
AT2G23420.1	KRG90054	AT3G06330.1	21798944
AT2G23420.1	KRH09910	AT3G16250.1	21798944
AT2G23420.1	KRH23421	AT3G16250.1	21798944
AT2G23420.1	KRH42209	AT3G26420.1	21798944
AT2G23420.1	KRH58335	AT3G26420.1	21798944
AT2G23420.1	KRG92959	AT3G55260.1	21798944
AT2G23420.1	KRH01583	AT3G55260.1	21798944
AT2G23420.1	KRH01584	AT3G55260.1	21798944
AT2G23420.1	KRH36208	AT3G55260.1	21798944
AT2G23420.1	KRH70518	AT3G55260.1	21798944
AT2G23420.1	KRH11776	AT3G62250.1	21798944
AT2G23420.1	KRH36782	AT3G62250.1	21798944
AT2G23420.1	KRH69588	AT3G62250.1	21798944
AT2G23420.1	KRH74571	AT3G62250.1	21798944
AT2G23420.1	KRG89345	AT4G14060.1	21798944
AT2G23420.1	KRH50391	AT4G14060.1	21798944
AT2G23420.1	KRH52686	AT4G32750.1	21798944
AT2G23420.1	KRH62026	AT4G32750.1	21798944
AT2G23420.1	KRG91074	AT4G33920.1	21798944
AT2G23420.1	KRH28403	AT4G33920.1	21798944
AT2G23420.1	KRH35699	AT4G33920.1	21798944
AT2G23420.1	KRH77072	AT4G33920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH04597	Soybean	cytosol	74.33	97.64
VIT_07s0031g00460.t01	Wine grape	cytosol	84.56	83.96
PGSC0003DMT400010254	Potato	cytosol	83.84	83.69
GSMUA_Achr2P08220_001	Banana	cytosol	80.25	83.4
Solyc02g093290.2.1	Tomato	cytosol, extracellular, nucleus	83.12	82.97
AT2G23420.1	Thale cress	cytosol	82.23	82.23
GSMUA_Achr11P...	Banana	cytosol	76.3	82.05
KRH77015	Soybean	cytosol	81.87	81.72
CDY46076	Canola	cytosol	81.51	81.65
Bra039198.1-P	Field mustard	cytosol	81.51	81.65
CDY63965	Canola	cytosol	75.94	81.35
AT4G36940.1	Thale cress	cytosol	81.33	81.04
Bra017808.1-P	Field mustard	cytosol	75.76	80.23
CDY66512	Canola	cytosol	79.71	79.86
KRH63322	Soybean	extracellular	11.85	79.52
CDY29537	Canola	cytosol	80.07	79.36
Solyc03g044430.2.1	Tomato	cytosol	80.43	79.15
Zm00001d034777_P005	Maize	cytosol	78.64	78.64
Zm00001d003674_P001	Maize	extracellular	37.7	77.78
OQU90665	Sorghum	peroxisome	78.82	77.56
Os04t0429800-01	Rice	plasma membrane, plastid	78.28	77.44
Os03t0837300-02	Rice	plasma membrane	77.38	76.96
TraesCS2B01G318300.2	Wheat	cytosol, peroxisome, plastid	77.92	76.68
TraesCS2D01G301100.1	Wheat	golgi	77.92	76.68
TraesCS2A01G302400.1	Wheat	cytosol, peroxisome, plastid	77.74	76.5
KXG26318	Sorghum	cytosol, plastid	78.28	76.49
TraesCS4A01G354500.1	Wheat	peroxisome	78.28	75.56
TraesCS5B01G517900.3	Wheat	peroxisome	78.1	75.39
TraesCS5D01G517600.1	Wheat	peroxisome	77.92	75.22
Zm00001d025412_P001	Maize	plastid	77.56	67.08
Zm00001d003675_P001	Maize	plastid	26.75	66.82
KRH28456	Soybean	extracellular	22.44	66.14
HORVU2Hr1G074990.1	Barley	plastid	4.49	23.81

Protein Annotations

KEGG:00760+6.3.4.21	EntrezGene:100799223	Gene3D:3.20.140.10	Gene3D:3.20.20.70	MapMan:7.9.2.2	EMBL:ACUP02003161
InterPro:Aldolase_TIM	EnsemblPlantsGene:GLYMA_05G094000	GO:GO:0003674	GO:GO:0003824	GO:GO:0004514	GO:GO:0004516
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009435	GO:GO:0009987
GO:GO:0016740	GO:GO:0019358	UniProt:I1K246	InterPro:IPR013785	EnsemblPlants:KRH57934	ProteinID:KRH57934
ProteinID:KRH57934.1	InterPro:Nic_PRibTrfase-Fam	InterPro:Nic_PRibTrfase_pncB	InterPro:Nicotinate_pribotase_like_C	PFAM:PF04095	PIRSF:PIRSF000484
PANTHER:PTHR11098	PANTHER:PTHR11098:SF17	MetaCyc:PWY-5381	SUPFAM:SSF51690	SUPFAM:SSF54675	TIGRFAMs:TIGR01513
UniParc:UPI000233A261	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:23861868..23872156

Molecular Weight (calculated)

62153.2 Da

IEP (calculated)

5.583

GRAVY (calculated)

-0.186

Length

557 amino acids

Sequence
(BLAST)

001: METKENGPSK KVSNGGIDGP TNPMVTPLLN DLYQFTMAYA YWKAGKHQER AVFDLYFRRN PFGGEYTVFA GLEECIRFIA NFTLAEEEID FVRECLSSSC
101: EDGFFDYLRG LDCSDVEVYA IPEGTVVFPK VPLMRVEGPV AVVQLLETPF VNLINYASLV STNAARHRNV AGKSKTLLEF GLRRAQGPDG GVGASKYCYI
201: GGFDATSNVA AGKLFGIPLR GTHSHAFVSS YMSLDEITDK SLRGKDGSSR CDDFVSLVQT WLNKIQLSNG VFGETNQSEL AAFTSYALAF PDGFLALVDT
301: YDVMRSGIPN FCAVALALSD LGYKAVGIRL DSGDLAYLSC EVRNFFRSIE KEFGVPEFGK LQITASNDLN EETLDALNKQ GHEVDAFGIG TYLVTCYAQA
401: ALGVVFKLVE INNQPRIKLS EDVSKVSIPC KKRCYRLYGK EGYPLVDIMT GENEPSPKVG ERILCRHPFQ ESKRAYVVPQ RVEELLRCYW PGSTDIKKDT
501: LPALRDIRER CINQLEQMRP DHMRRLNPTP YKVSVSAKLY DFIHFLWLNE APVGELQ

Best Arabidopsis Sequence Match ( AT2G23420.1 )
(BLAST)

001: MEPKENGSEL GQKIIDGPTN PMVTPLLNDL YQFTMAYAYW KAGKHNERSV FDLYFRKNPF GGEYTVFAGL EECVKFLANF KLTDEEIDFV QECLPGSEEA
101: FCDYLRGLDC SDVEVYAIPE GSVVFPKVPL MRVEGPVGVV QLLETPFLNL VNFASLVATN AARHRFVAGK SKSLLEFGAR RAQGPDGAIS ASKYCYLGGF
201: DATSNVAAGK LFGIPLRGTH SHAYVSSFMS TDEIVDKVLR SADGKTTCED FVSHVQTWLK KIQYSPSLSG IFSETNQSEL AAFTSYALAF PKTFLALVDT
301: YDVMKSGIPN FCAVALALND FGYKALGIRL DSGDLAYLSR EARNFFCTVE RELKVPGFGK MVVTASNDLN EETIDALNKQ GHEVDAFGIG TYLVTCYSQA
401: ALGCVFKLVE INNQPRIKLS EDVTKVSIPC KKRSYRLYGK EGYPLVDIMT GENEPPPKVG ERLLCRHPFN ESKRAYVVPQ RVEELLKCYW RGSADEAREV
501: LPPLKEIRDR CIKQLENMRP DHMRRLNPTP YKVSVSAKLY DFIHFLWLNE APVGELQ

Arabidopsis Description

NAPRT2Nicotinate phosphoribosyltransferase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q84WV8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.