Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH12470 | Soybean | cytosol, endoplasmic reticulum, nucleus | 87.34 | 93.74 |
| KRH35776 | Soybean | cytosol | 93.05 | 93.63 |
| KRG90981 | Soybean | nucleus | 90.2 | 91.1 |
| VIT_01s0011g02040.t01 | Wine grape | cytosol | 77.3 | 76.54 |
| Solyc04g005690.2.1 | Tomato | cytosol, nucleus | 72.33 | 75.91 |
| Solyc02g081960.2.1 | Tomato | cytosol, nucleus | 71.59 | 75.03 |
| PGSC0003DMT400007349 | Potato | cytosol | 74.57 | 74.84 |
| PGSC0003DMT400018892 | Potato | cytosol | 73.7 | 74.06 |
| CDY52036 | Canola | cytosol, plastid | 16.63 | 72.04 |
| GSMUA_Achr3P03970_001 | Banana | cytosol | 69.35 | 71.39 |
| CDY45277 | Canola | cytosol, plastid | 16.25 | 70.81 |
| Bra026198.1-P | Field mustard | cytosol, plastid | 16.0 | 70.11 |
| GSMUA_Achr9P12650_001 | Banana | cytosol | 69.35 | 69.27 |
| CDY41093 | Canola | cytosol | 66.0 | 68.91 |
| Bra016688.1-P | Field mustard | cytosol | 58.93 | 68.64 |
| CDX84019 | Canola | cytosol | 15.88 | 68.45 |
| AT1G14650.1 | Thale cress | cytosol | 66.5 | 68.28 |
| AT5G06890.1 | Thale cress | cytosol | 5.46 | 66.67 |
| CDY52037 | Canola | cytosol | 24.44 | 66.11 |
| CDX84020 | Canola | nucleus | 17.49 | 65.89 |
| CDY45276 | Canola | cytosol | 23.2 | 64.93 |
| AT1G14640.1 | Thale cress | cytosol | 56.95 | 62.45 |
| EES00535 | Sorghum | cytosol | 61.41 | 61.64 |
| Os02t0245000-01 | Rice | cytosol | 60.55 | 61.62 |
| Zm00001d040343_P003 | Maize | cytosol | 61.41 | 61.34 |
| Zm00001d008293_P001 | Maize | cytosol | 61.29 | 61.29 |
| TraesCS3B01G212000.1 | Wheat | cytosol | 43.8 | 61.07 |
| TraesCS3D01G510100.1 | Wheat | cytosol | 59.55 | 60.45 |
| TraesCS3B01G211900.1 | Wheat | cytosol | 57.44 | 60.37 |
| TraesCS3A01G503600.1 | Wheat | cytosol | 58.93 | 60.05 |
| HORVU3Hr1G110920.1 | Barley | cytosol | 59.31 | 58.36 |
| TraesCS3B01G566900.1 | Wheat | cytosol | 59.55 | 57.97 |
| CDY21434 | Canola | cytosol | 3.97 | 45.07 |
| Bra000608.1-P | Field mustard | cytosol | 3.97 | 45.07 |
| CDY62788 | Canola | cytosol | 6.08 | 41.53 |
| CDY71524 | Canola | cytosol | 13.15 | 37.46 |
| KXG32223 | Sorghum | nucleus, plastid | 8.81 | 37.17 |
| CDX89548 | Canola | cytosol | 7.57 | 36.31 |
| CDX89545 | Canola | cytosol | 7.44 | 35.71 |
| CDY65449 | Canola | cytosol | 17.25 | 35.1 |
| AT5G12280.1 | Thale cress | cytosol | 18.24 | 35.08 |
| CDY38929 | Canola | cytosol | 7.32 | 34.91 |
| CDX83169 | Canola | plasma membrane | 4.47 | 34.29 |
| Bra032181.1-P | Field mustard | cytosol | 8.56 | 31.94 |
| Bra023557.1-P | Field mustard | mitochondrion | 8.81 | 29.83 |
| CDY09657 | Canola | cytosol, nucleus, plastid | 16.5 | 29.17 |
| AT3G49130.1 | Thale cress | cytosol | 11.04 | 28.99 |
| AT3G27600.1 | Thale cress | cytosol | 10.92 | 28.11 |
| CDY09653 | Canola | nucleus | 16.38 | 26.99 |
| CDY21696 | Canola | cytosol | 11.29 | 26.69 |
| CDY38128 | Canola | cytosol | 13.15 | 26.5 |
| Bra031050.1-P | Field mustard | cytosol | 12.03 | 24.37 |
| CDX81896 | Canola | cytosol | 6.95 | 24.24 |
| CDY58992 | Canola | cytosol | 6.95 | 24.14 |
| CDY69291 | Canola | cytosol, golgi | 4.96 | 24.1 |
| AT4G16200.1 | Thale cress | nucleus | 7.82 | 21.88 |
| CDX71843 | Canola | cytosol | 5.58 | 20.64 |
| CDY72308 | Canola | cytosol | 16.38 | 20.21 |
| CDY58090 | Canola | cytosol | 12.9 | 19.92 |
| Bra007503.1-P | Field mustard | cytosol | 12.9 | 19.89 |
| CDY44531 | Canola | cytosol | 13.28 | 19.21 |
| CDY38126 | Canola | cytosol | 17.87 | 17.48 |
| AT5G06520.1 | Thale cress | cytosol | 13.52 | 16.05 |
| CDX71844 | Canola | cytosol, golgi, plasma membrane | 3.97 | 15.84 |
| AT1G18050.1 | Thale cress | nucleus | 3.1 | 11.16 |
Protein Annotations
| Gene3D:1.10.10.790 | EntrezGene:100794736 | MapMan:16.4.1.2.3.1 | Gene3D:3.10.20.90 | EMBL:ACUP02005377 | ncoils:Coil |
| EnsemblPlantsGene:GLYMA_09G007700 | GO:GO:0000381 | GO:GO:0000389 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005686 | GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0071004 | GO:GO:0071013 | UniProt:I1KZW4 | InterPro:IPR000061 | InterPro:IPR000626 |
| InterPro:IPR035967 | ProteinID:KRH36510.1 | EnsemblPlants:KRH36511 | ProteinID:KRH36511 | ProteinID:KRH36511.1 | ProteinID:KRH36512.1 |
| ProteinID:KRH36513.1 | PFAM:PF00240 | PFAM:PF01805 | PFAM:PF12230 | PRINTS:PR01217 | PFscan:PS50053 |
| PFscan:PS50128 | PANTHER:PTHR15316 | PANTHER:PTHR15316:SF1 | InterPro:SF3A1 | SMART:SM00213 | SMART:SM00648 |
| SUPFAM:SSF109905 | SUPFAM:SSF54236 | InterPro:SWAP/Surp_sf | InterPro:Surp | UniParc:UPI000233919B | InterPro:Ubiquitin-like_domsf |
| InterPro:Ubiquitin_dom | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr9:+:571004..575383
Molecular Weight (calculated)
88989.8 Da
IEP (calculated)
4.796
GRAVY (calculated)
-0.614
Length
806 amino acids
Sequence
(BLAST)
(BLAST)
001: MMLGSLPILP LPAPPSDGNL GPLPESQVID DNEEEQNKSN SASVPAPATV ATHTRTIGII HPPPDIRTIV DKTSQFVAKN GPEFEKRIIA NNTGNVKFNF
101: LNSSDPYHAY YQHRLSEFRA QNQSSGQQQP ADSAAVPESV PSDSNGVVAA AAAAAEKPDF SAQFKPVRKV LEPPEAEQYT VRLPEGITGE ELDIIKLTAQ
201: FVARNGKSFL TGLTSREVNN PQFHFLKPTH SMFTFFTSLA DAYSKVLMPP KGLMEKLKNS VSDMTTVLER CVNRLEWDRS QEQARQKAED EIEQERIQMA
301: MIDWHDFVVV ETIDFADDED QELPPPMTIE EVIRRSKVTA MEEEDIVEPG KEVEMEMDEE EAQLVEEGMR AASLEDRDDR KQNEVRVTED PEPPMRIVKN
401: WKRPEERISA ERDSTKFVVS PITGELIPIS EMSEHMRISL IDPKYKEQKE RMFAKIRETT LAADDEISRN IVGLARTRPD IFGTTEEEVS NAVKAEIEKI
501: NDEQPKQVIW DGHTGSIGRT ANQAMSQNIG NEDQNDASNN EARNFLGPAA PPPRPGMPSV RPLPPPPGLA LNLPRVPVQY SAPHSGALPM PPPRPMMPSI
601: RPAPPPPMPM NTGQQSVMAG QPPPMHPSIP MNNQGIPIPP PPGSHFTHVP VPRPFVPLSV PQSVMPMMHP PPLPQGVPPP LPPEEAPPPL PEEPEPKRQK
701: LDDSALIPED QFLAQHPGPV RISVSVPNVD EGNLKGQVLE ITVQSLSETV GSLKEKIAGE IQLPANKQKL SGKPGFLKDN MSLAHYNVGG GETLTLSLRE
801: RGGRKR
101: LNSSDPYHAY YQHRLSEFRA QNQSSGQQQP ADSAAVPESV PSDSNGVVAA AAAAAEKPDF SAQFKPVRKV LEPPEAEQYT VRLPEGITGE ELDIIKLTAQ
201: FVARNGKSFL TGLTSREVNN PQFHFLKPTH SMFTFFTSLA DAYSKVLMPP KGLMEKLKNS VSDMTTVLER CVNRLEWDRS QEQARQKAED EIEQERIQMA
301: MIDWHDFVVV ETIDFADDED QELPPPMTIE EVIRRSKVTA MEEEDIVEPG KEVEMEMDEE EAQLVEEGMR AASLEDRDDR KQNEVRVTED PEPPMRIVKN
401: WKRPEERISA ERDSTKFVVS PITGELIPIS EMSEHMRISL IDPKYKEQKE RMFAKIRETT LAADDEISRN IVGLARTRPD IFGTTEEEVS NAVKAEIEKI
501: NDEQPKQVIW DGHTGSIGRT ANQAMSQNIG NEDQNDASNN EARNFLGPAA PPPRPGMPSV RPLPPPPGLA LNLPRVPVQY SAPHSGALPM PPPRPMMPSI
601: RPAPPPPMPM NTGQQSVMAG QPPPMHPSIP MNNQGIPIPP PPGSHFTHVP VPRPFVPLSV PQSVMPMMHP PPLPQGVPPP LPPEEAPPPL PEEPEPKRQK
701: LDDSALIPED QFLAQHPGPV RISVSVPNVD EGNLKGQVLE ITVQSLSETV GSLKEKIAGE IQLPANKQKL SGKPGFLKDN MSLAHYNVGG GETLTLSLRE
801: RGGRKR
001: MFSSMQILPL EAPPTDGKLG PLPPSQLTDQ EVEERELQAE QNNSNLAPPA AVATHTRTIG IIHPPPDIRT IVEKTAQFVS KNGLEFEKRI IVSNEKNAKF
101: NFLKSSDPYH AFYQHKLTEY RAQNKDGAQG TDDSDGTTDP QLDTGAADES EAGDTQPDLQ AQFRIPSKPL EAPEPEKYTV RLPEGITGEE LDIIKLTAQF
201: VARNGKSFLT GLSNRENNNP QFHFMKPTHS MFTFFTSLVD AYSEVLMPPK DLKEKLRKSA ADLTTVLERC LHRLEWDRSQ EQQKKKEEDE KELERVQMAM
301: IDWHDFVVVE SIDFADEEDE ELPPPMTLDE VIRRSKASAM EEDEIVEPGK EVEMEMDEEE VKLVAEGMRA ANLEENVKIE NVHDEEAPMR IVKNWKRPED
401: RIPTERDPTK VVISPITGEL IPINEMSEHM RISLIDPKFK EQKDRMFAKI RETTLAQDDE IAKNIVGLAR LRPDIFGTTE EEVSNAVKAE IEKKKDEQPK
501: QVIWDGHTGS IGRTANQALS QNANGEEQGD GVYGDPNSFP GPAALPPPRP GVPIVRPLPP PPNLALNLPR PPPSAQYPGA PRPLGVPMMQ PMHQQHQLTM
601: PGPPGHPQMM MNRPPQMQPG MHVPPPPGSQ FAHHMQIPRP YGQLPPSAMG MMQPPPMPGM APPPPPEEAP PPLPEEPEAK RQKFDESALV PEDQFLAQHP
701: GPATIRVSKP NENDGQFMEI TVQSLSENVG SLKEKIAGEI QIPANKQKLS GKAGFLKDNM SLAHYNVGAG EILTLSLRER GGRKR
101: NFLKSSDPYH AFYQHKLTEY RAQNKDGAQG TDDSDGTTDP QLDTGAADES EAGDTQPDLQ AQFRIPSKPL EAPEPEKYTV RLPEGITGEE LDIIKLTAQF
201: VARNGKSFLT GLSNRENNNP QFHFMKPTHS MFTFFTSLVD AYSEVLMPPK DLKEKLRKSA ADLTTVLERC LHRLEWDRSQ EQQKKKEEDE KELERVQMAM
301: IDWHDFVVVE SIDFADEEDE ELPPPMTLDE VIRRSKASAM EEDEIVEPGK EVEMEMDEEE VKLVAEGMRA ANLEENVKIE NVHDEEAPMR IVKNWKRPED
401: RIPTERDPTK VVISPITGEL IPINEMSEHM RISLIDPKFK EQKDRMFAKI RETTLAQDDE IAKNIVGLAR LRPDIFGTTE EEVSNAVKAE IEKKKDEQPK
501: QVIWDGHTGS IGRTANQALS QNANGEEQGD GVYGDPNSFP GPAALPPPRP GVPIVRPLPP PPNLALNLPR PPPSAQYPGA PRPLGVPMMQ PMHQQHQLTM
601: PGPPGHPQMM MNRPPQMQPG MHVPPPPGSQ FAHHMQIPRP YGQLPPSAMG MMQPPPMPGM APPPPPEEAP PPLPEEPEAK RQKFDESALV PEDQFLAQHP
701: GPATIRVSKP NENDGQFMEI TVQSLSENVG SLKEKIAGEI QIPANKQKLS GKAGFLKDNM SLAHYNVGAG EILTLSLRER GGRKR
Arabidopsis Description
Probable splicing factor 3A subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXF1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.