Factsheet for PGSC0003DMT400018892

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g081960.2.1	Tomato	cytosol, nucleus	90.4	94.28
PGSC0003DMT400007349	Potato	cytosol	91.65	91.53
VIT_01s0011g02040.t01	Wine grape	cytosol	76.81	75.68
KRH12470	Soybean	cytosol, endoplasmic reticulum, nucleus	69.7	74.43
KRH35776	Soybean	cytosol	73.69	73.78
KRH36511	Soybean	cytosol	74.06	73.7
KRG90981	Soybean	nucleus	72.94	73.31
GSMUA_Achr3P03970_001	Banana	cytosol	68.33	69.99
CDY41093	Canola	cytosol	66.58	69.17
GSMUA_Achr9P12650_001	Banana	cytosol	68.95	68.53
Bra016688.1-P	Field mustard	cytosol	58.23	67.49
AT1G14650.1	Thale cress	cytosol	65.84	67.26
Bra026198.1-P	Field mustard	cytosol, plastid	15.34	66.85
CDX84020	Canola	nucleus	17.83	66.82
CDY45277	Canola	cytosol, plastid	15.34	66.49
CDY52036	Canola	cytosol, plastid	15.21	65.59
CDY45276	Canola	cytosol	22.94	63.89
CDY52037	Canola	cytosol	23.69	63.76
CDX84019	Canola	cytosol	14.59	62.57
AT1G14640.1	Thale cress	cytosol	56.98	62.18
AT5G06890.1	Thale cress	cytosol	4.99	60.61
TraesCS3B01G212000.1	Wheat	cytosol	43.64	60.55
Os02t0245000-01	Rice	cytosol	59.48	60.23
EES00535	Sorghum	cytosol	59.6	59.53
Zm00001d008293_P001	Maize	cytosol	59.6	59.31
Zm00001d040343_P003	Maize	cytosol	59.6	59.23
TraesCS3D01G510100.1	Wheat	cytosol	58.6	59.19
TraesCS3B01G211900.1	Wheat	cytosol	56.36	58.93
TraesCS3A01G503600.1	Wheat	cytosol	57.98	58.79
HORVU3Hr1G110920.1	Barley	cytosol	58.23	57.02
TraesCS3B01G566900.1	Wheat	cytosol	58.48	56.64
CDY21434	Canola	cytosol	3.74	42.25
Bra000608.1-P	Field mustard	cytosol	3.74	42.25
CDY62788	Canola	cytosol	5.99	40.68
CDY71524	Canola	cytosol	12.84	36.4
CDX89545	Canola	cytosol	7.48	35.71
CDX89548	Canola	cytosol	7.48	35.71
CDY38929	Canola	cytosol	7.36	34.91
AT5G12280.1	Thale cress	cytosol	18.08	34.61
KXG32223	Sorghum	nucleus, plastid	8.23	34.55
CDY65449	Canola	cytosol	16.71	33.84
Bra032181.1-P	Field mustard	cytosol	8.98	33.33
CDX83169	Canola	plasma membrane	4.24	32.38
Bra023557.1-P	Field mustard	mitochondrion	8.73	29.41
AT3G49130.1	Thale cress	cytosol	10.72	28.01
CDY09657	Canola	cytosol, nucleus, plastid	15.46	27.19
CDY21696	Canola	cytosol	11.35	26.69
CDY38128	Canola	cytosol	13.22	26.5
AT3G27600.1	Thale cress	cytosol	9.98	25.56
CDY09653	Canola	nucleus	15.34	25.15
CDY69291	Canola	cytosol, golgi	5.11	24.7
Bra031050.1-P	Field mustard	cytosol	11.97	24.12
CDX81896	Canola	cytosol	6.73	23.38
CDY58992	Canola	cytosol	6.73	23.28
AT4G16200.1	Thale cress	nucleus	7.61	21.18
CDY58090	Canola	cytosol	12.59	19.35
Bra007503.1-P	Field mustard	cytosol	12.59	19.31
CDX71843	Canola	cytosol	5.24	19.27
CDY72308	Canola	cytosol	15.46	18.99
CDY38126	Canola	cytosol	18.7	18.2
CDY44531	Canola	cytosol	12.59	18.13
CDX71844	Canola	cytosol, golgi, plasma membrane	4.11	16.34
AT5G06520.1	Thale cress	cytosol	13.34	15.76
AT1G18050.1	Thale cress	nucleus	3.24	11.61

Protein Annotations

Gene3D:1.10.10.790	EntrezGene:102591518	MapMan:16.4.1.2.3.1	Gene3D:3.10.20.90	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006396
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR000061	InterPro:IPR000626	InterPro:IPR035967
UniProt:M1ABB0	PFAM:PF00240	PFAM:PF01805	PFAM:PF12230	EnsemblPlantsGene:PGSC0003DMG400007322	PGSC:PGSC0003DMG400007322
EnsemblPlants:PGSC0003DMT400018892	PFscan:PS50053	PFscan:PS50128	PANTHER:PTHR15316	PANTHER:PTHR15316:SF1	InterPro:SF3A1
SMART:SM00213	SMART:SM00648	SUPFAM:SSF109905	SUPFAM:SSF54236	InterPro:SWAP/Surp_sf	InterPro:Surp
UniParc:UPI000294A6DB	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	RefSeq:XP_006363165.1	RefSeq:XP_006363166.1	RefSeq:XP_006363167.1
RefSeq:XP_015158802.1	SEG:seg	:	:	:	:

Description

Spliceosome associated protein [Source:PGSC_GENE;Acc:PGSC0003DMG400007322]

Coordinates

chr2:+:37626146..37632510

Molecular Weight (calculated)

88808.8 Da

IEP (calculated)

4.727

GRAVY (calculated)

-0.665

Length

802 amino acids

Sequence
(BLAST)

001: MLGITPILPL PAPPLDGNLG PTPLAQVVEE PNDVKMEENE EENNKDKVPT SVATHTRTIG IIYPPPDIRS IVDKTSQFVA KNGPEFEKRI VLNNAGNAKF
101: NFLNASDPYH AYYQHRLAEA RAHNQGSGEQ PEDKEGTPAP STADGAEATA KPDPSAQFRP VRKVLEPPEA EQYTVRLPEG ITGEEMDIIK LTSQFVARNG
201: KSFLTGLTSR EMNNPQFHFL KPTHSMFMFF TSLADAYSKV LMPPKGLTNK LQKSAADMTT VLERCLHRLE WERSQEQARQ KAEDEIEQER VQMAMIDWHD
301: FVVVETIDFA DDEDQDLPPP MTLEEVIRRS KMPTLEEEEY VEPGKEVEME MDEEEVQLVE EGMRAATLEG NGGVKSAETM AISEENDPPM RIVKNWKRPE
401: ERIPAERDPT KYVVSPITGE LIPISEMSEH MRISLIDPKY KEQKDRMFAK IKETTLAQDD EISRNIVGLA RTRPDIFGTT EEEVSNAVKA EIEKKIEEPK
501: QVIWDGHTGS IGRTASQAMS QNNAEDQNDA ANDVRNLPGP QAPPPPRPGL PSVRPLPPPP GLALNIPRPP NTFQYSTPTI AGAAPPPPQP PMVNMIPQVR
601: PPPPPMLQLQ GQQNLMVNRP PMPPSMAMSS HTLPIPPPPG SQFTPMGAPR PFVPHPMSQP GMSMVPPPPM PQGMPPPPPP EEAPPLPEEP EPKRQKLDES
701: VLIPEDQFLA QHSGPARINV SVPNTDEGNL KGQVLEITVL SLSETIASLK EKISGEIQLP ANKQKLSGKA GFLKDNLSLA YYNVASGETF SLSLRERGGR
801: KR

Best Arabidopsis Sequence Match ( AT1G14650.1 )
(BLAST)

001: MFSSMQILPL EAPPTDGKLG PLPPSQLTDQ EVEERELQAE QNNSNLAPPA AVATHTRTIG IIHPPPDIRT IVEKTAQFVS KNGLEFEKRI IVSNEKNAKF
101: NFLKSSDPYH AFYQHKLTEY RAQNKDGAQG TDDSDGTTDP QLDTGAADES EAGDTQPDLQ AQFRIPSKPL EAPEPEKYTV RLPEGITGEE LDIIKLTAQF
201: VARNGKSFLT GLSNRENNNP QFHFMKPTHS MFTFFTSLVD AYSEVLMPPK DLKEKLRKSA ADLTTVLERC LHRLEWDRSQ EQQKKKEEDE KELERVQMAM
301: IDWHDFVVVE SIDFADEEDE ELPPPMTLDE VIRRSKASAM EEDEIVEPGK EVEMEMDEEE VKLVAEGMRA ANLEENVKIE NVHDEEAPMR IVKNWKRPED
401: RIPTERDPTK VVISPITGEL IPINEMSEHM RISLIDPKFK EQKDRMFAKI RETTLAQDDE IAKNIVGLAR LRPDIFGTTE EEVSNAVKAE IEKKKDEQPK
501: QVIWDGHTGS IGRTANQALS QNANGEEQGD GVYGDPNSFP GPAALPPPRP GVPIVRPLPP PPNLALNLPR PPPSAQYPGA PRPLGVPMMQ PMHQQHQLTM
601: PGPPGHPQMM MNRPPQMQPG MHVPPPPGSQ FAHHMQIPRP YGQLPPSAMG MMQPPPMPGM APPPPPEEAP PPLPEEPEAK RQKFDESALV PEDQFLAQHP
701: GPATIRVSKP NENDGQFMEI TVQSLSENVG SLKEKIAGEI QIPANKQKLS GKAGFLKDNM SLAHYNVGAG EILTLSLRER GGRKR

Arabidopsis Description

Probable splicing factor 3A subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXF1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.