Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY09653 | Canola | nucleus | 90.13 | 84.05 |
| CDY65449 | Canola | cytosol | 45.39 | 52.27 |
| CDX84019 | Canola | cytosol | 14.04 | 34.22 |
| CDY45277 | Canola | cytosol, plastid | 13.6 | 33.51 |
| CDY52036 | Canola | cytosol, plastid | 13.6 | 33.33 |
| CDY62788 | Canola | cytosol | 6.36 | 24.58 |
| CDY52037 | Canola | cytosol | 15.57 | 23.83 |
| CDY71524 | Canola | cytosol | 14.47 | 23.32 |
| CDX84020 | Canola | nucleus | 10.53 | 22.43 |
| CDY45276 | Canola | cytosol | 13.38 | 21.18 |
| CDX89545 | Canola | cytosol | 7.24 | 19.64 |
| CDX89548 | Canola | cytosol | 7.02 | 19.05 |
| CDY38929 | Canola | cytosol | 7.02 | 18.93 |
| CDY21434 | Canola | cytosol | 2.85 | 18.31 |
| CDY41093 | Canola | cytosol | 30.48 | 18.01 |
| CDY21696 | Canola | cytosol | 12.94 | 17.3 |
| KRH36511 | Soybean | cytosol | 29.17 | 16.5 |
| KRH35776 | Soybean | cytosol | 28.95 | 16.48 |
| KRH12470 | Soybean | cytosol, endoplasmic reticulum, nucleus | 26.97 | 16.38 |
| KRG90981 | Soybean | nucleus | 28.51 | 16.29 |
| KXG32223 | Sorghum | nucleus, plastid | 6.8 | 16.23 |
| Solyc04g005690.2.1 | Tomato | cytosol, nucleus | 27.19 | 16.15 |
| Solyc02g081960.2.1 | Tomato | cytosol, nucleus | 27.19 | 16.12 |
| CDY69291 | Canola | cytosol, golgi | 5.7 | 15.66 |
| PGSC0003DMT400007349 | Potato | cytosol | 27.41 | 15.57 |
| VIT_01s0011g02040.t01 | Wine grape | cytosol | 27.63 | 15.48 |
| PGSC0003DMT400018892 | Potato | cytosol | 27.19 | 15.46 |
| TraesCS3D01G510100.1 | Wheat | cytosol | 25.88 | 14.86 |
| EES00535 | Sorghum | cytosol | 26.1 | 14.82 |
| TraesCS3A01G503600.1 | Wheat | cytosol | 25.66 | 14.79 |
| GSMUA_Achr3P03970_001 | Banana | cytosol | 25.22 | 14.69 |
| Os02t0245000-01 | Rice | cytosol | 25.44 | 14.65 |
| TraesCS3B01G211900.1 | Wheat | cytosol | 24.56 | 14.6 |
| Zm00001d040343_P003 | Maize | cytosol | 25.66 | 14.5 |
| GSMUA_Achr9P12650_001 | Banana | cytosol | 25.44 | 14.37 |
| CDX83169 | Canola | plasma membrane | 3.29 | 14.29 |
| CDX81896 | Canola | cytosol | 7.24 | 14.29 |
| Zm00001d008293_P001 | Maize | cytosol | 25.22 | 14.27 |
| CDY58992 | Canola | cytosol | 7.24 | 14.22 |
| TraesCS3B01G566900.1 | Wheat | cytosol | 25.0 | 13.77 |
| HORVU3Hr1G110920.1 | Barley | cytosol | 24.56 | 13.68 |
| CDY58090 | Canola | cytosol | 15.13 | 13.22 |
| CDY44531 | Canola | cytosol | 15.57 | 12.75 |
| TraesCS3B01G212000.1 | Wheat | cytosol | 15.35 | 12.11 |
| CDY72308 | Canola | cytosol | 17.32 | 12.1 |
| CDX71844 | Canola | cytosol, golgi, plasma membrane | 5.04 | 11.39 |
| CDY38128 | Canola | cytosol | 9.43 | 10.75 |
| CDX71843 | Canola | cytosol | 4.82 | 10.09 |
| CDY38126 | Canola | cytosol | 11.18 | 6.19 |
Protein Annotations
| Gene3D:1.10.10.790 | Gene3D:3.10.20.90 | MapMan:35.1 | GO:A0A078F9B4 | UniProt:A0A078F9B4 | EnsemblPlants:CDY09657 |
| ProteinID:CDY09657 | ProteinID:CDY09657.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00031308001 | InterPro:IPR000061 | InterPro:IPR000626 | InterPro:IPR035967 | PFAM:PF00240 |
| PFAM:PF01805 | PFscan:PS50053 | PFscan:PS50128 | PANTHER:PTHR15316 | PANTHER:PTHR15316:SF1 | SMART:SM00213 |
| SMART:SM00648 | SUPFAM:SSF109905 | SUPFAM:SSF54236 | InterPro:SWAP/Surp_sf | InterPro:Surp | UniParc:UPI0004EF3E15 |
| InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_dom | SEG:seg | : | : | : |
Description
BnaC07g34040DBnaC07g34040D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F9B4]
Coordinates
chrLK031998:-:272874..275009
Molecular Weight (calculated)
51535.4 Da
IEP (calculated)
9.347
GRAVY (calculated)
-0.478
Length
456 amino acids
Sequence
(BLAST)
(BLAST)
001: MRPTREKNSY ILRNTEAKAV QKENAAADWI PIISRHSQLC RLGKLQNREG VRSFSLLSFF FFGGSPVEVR RFPSSYSFSI SERAYLKKMA EDGIIQPPED
101: IATKTIVEKT ASFLSRNKMD KSEIMPSDVR YNFLRSKTDP SHAYYSYMLS KYSDAHSQGG GGAVEGAAVN IEPDDHTKDL TIINTPAQVP AITLAARVAC
201: LVSVEGLDLE KQLRDSQVSD TRFNFLRDAS DVCHAYYQRS LAYLSFGNKS QLKARAQPPP VFNTPNTQIL WHPFYNEFQR AYERLFKPPK DTKEQLYKSA
301: EYTDAIQKGF LQRIQLDDPI KERKWLEQGE RAMIDWHDAT SKPFAMKEVQ ELLPPQGPDP KRQKLEVSLL VPETQFLAQH QGLSSLTVSF PNRQAVVIKV
401: SSLSANVASL KQIIAEVIQI PADKHKLSGK SGVLKDDNMT LAHYNVRDGD ILTLSL
101: IATKTIVEKT ASFLSRNKMD KSEIMPSDVR YNFLRSKTDP SHAYYSYMLS KYSDAHSQGG GGAVEGAAVN IEPDDHTKDL TIINTPAQVP AITLAARVAC
201: LVSVEGLDLE KQLRDSQVSD TRFNFLRDAS DVCHAYYQRS LAYLSFGNKS QLKARAQPPP VFNTPNTQIL WHPFYNEFQR AYERLFKPPK DTKEQLYKSA
301: EYTDAIQKGF LQRIQLDDPI KERKWLEQGE RAMIDWHDAT SKPFAMKEVQ ELLPPQGPDP KRQKLEVSLL VPETQFLAQH QGLSSLTVSF PNRQAVVIKV
401: SSLSANVASL KQIIAEVIQI PADKHKLSGK SGVLKDDNMT LAHYNVRDGD ILTLSL
001: MSTSTLQSEQ SMEIITPPAD IGTRTLVDKA AQFVSKKGLE FETKIIDSYP TDAKFNFLRS TADPCHTYYK HKLAEYSSQN QDGATDESDI KIFHAPPNVT
101: TTAIVETTSC LVSQFGSEFE MMVKDSNTDD ARFNFLKSSE DPYNVLYKQK LDEYSLDPRD AYYQHKLAES ISKYHREATP KLVLPNLLQF RLVKEMTFEE
201: LDTVKVTAQF VAWYGDDFRG FLMERVMTEP QFEFMKATDY RFSFYNEFVV AYSQVLNPPK YLKDKLRGRA AYTVIGHLLI TMSEEEIS
101: TTAIVETTSC LVSQFGSEFE MMVKDSNTDD ARFNFLKSSE DPYNVLYKQK LDEYSLDPRD AYYQHKLAES ISKYHREATP KLVLPNLLQF RLVKEMTFEE
201: LDTVKVTAQF VAWYGDDFRG FLMERVMTEP QFEFMKATDY RFSFYNEFVV AYSQVLNPPK YLKDKLRGRA AYTVIGHLLI TMSEEEIS
Arabidopsis Description
SWAP (Suppressor-of-White-APricot)/surp domain-containing protein [Source:UniProtKB/TrEMBL;Acc:O23467]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.