CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52036	Canola	cytosol, plastid	82.89	83.33
CDY45277	Canola	cytosol, plastid	81.28	82.16
CDY71524	Canola	cytosol	37.43	24.73
CDY41093	Canola	cytosol	83.42	20.21
CDY65449	Canola	cytosol	36.36	17.17
KRH12470	Soybean	cytosol, endoplasmic reticulum, nucleus	67.38	16.78
TraesCS3B01G212000.1	Wheat	cytosol	51.34	16.61
KRG90981	Soybean	nucleus	70.59	16.54
KRH35776	Soybean	cytosol	68.98	16.1
KRH36511	Soybean	cytosol	68.45	15.88
Solyc02g081960.2.1	Tomato	cytosol, nucleus	63.1	15.34
GSMUA_Achr3P03970_001	Banana	cytosol	64.17	15.33
Solyc04g005690.2.1	Tomato	cytosol, nucleus	62.57	15.23
VIT_01s0011g02040.t01	Wine grape	cytosol	66.31	15.23
PGSC0003DMT400007349	Potato	cytosol	63.64	14.82
PGSC0003DMT400018892	Potato	cytosol	62.57	14.59
GSMUA_Achr9P12650_001	Banana	cytosol	61.5	14.25
CDY09657	Canola	cytosol, nucleus, plastid	34.22	14.04
CDY09653	Canola	nucleus	34.22	13.09
TraesCS3A01G503600.1	Wheat	cytosol	54.01	12.77
TraesCS3D01G510100.1	Wheat	cytosol	54.01	12.72
TraesCS3B01G211900.1	Wheat	cytosol	51.34	12.52
Os02t0245000-01	Rice	cytosol	52.41	12.37
TraesCS3B01G566900.1	Wheat	cytosol	54.01	12.2
HORVU3Hr1G110920.1	Barley	cytosol	52.94	12.09
EES00535	Sorghum	cytosol	50.8	11.83
Zm00001d040343_P003	Maize	cytosol	50.8	11.77
Zm00001d008293_P001	Maize	cytosol	49.73	11.54
CDY21434	Canola	cytosol	3.74	9.86
CDY38128	Canola	cytosol	20.32	9.5
CDY58090	Canola	cytosol	26.2	9.39
CDY72308	Canola	cytosol	31.02	8.88
CDX83169	Canola	plasma membrane	4.81	8.57
CDY44531	Canola	cytosol	24.06	8.08
CDY62788	Canola	cytosol	4.28	6.78
CDY38126	Canola	cytosol	24.06	5.46
CDY69291	Canola	cytosol, golgi	3.74	4.22
KXG32223	Sorghum	nucleus, plastid	4.28	4.19
CDX84020	Canola	nucleus	4.28	3.74
CDX89548	Canola	cytosol	3.21	3.57
CDX89545	Canola	cytosol	3.21	3.57
CDY38929	Canola	cytosol	3.21	3.55
CDY21696	Canola	cytosol	5.88	3.23
CDX81896	Canola	cytosol	3.74	3.03
CDY58992	Canola	cytosol	3.74	3.02
CDX71844	Canola	cytosol, golgi, plasma membrane	3.21	2.97
CDX71843	Canola	cytosol	3.21	2.75
CDY45276	Canola	cytosol	2.14	1.39
CDY52037	Canola	cytosol	1.6	1.01

Protein Annotations

EnsemblPlants:CDX84019	EnsemblPlantsGene:GSBRNA2T00139831001	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000626	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	PFAM:PF00240	PFscan:PS50053	ProteinID:CDX84019
ProteinID:CDX84019.1	SEG:seg	SMART:SM00213	SUPFAM:SSF54236	UniParc:UPI0004EE21E1	MapMan:35.1

Description

BnaC08g16260D

Coordinates

chrLK031834:-:1753387..1754040

Molecular Weight (calculated)

20116.5 Da

IEP (calculated)

7.948

GRAVY (calculated)

-0.635

Length

187 amino acids

Sequence
(BLAST)

001: MPGQPGHPSM MMMNRPPQMQ PGGMHVPPPP GSQFAHLQVP RPYGQLAPPP IGMMQPPPMH GMPPPPPPGE APPPLPEEPE PKRQKLDESA LVPEEQFLAQ
101: HPGSATIRVS VPNVDDGQVI EITVQSLSEN VGSLKEKIAG ETQIPANKQK LSGKAGFLKD NMSLAHYNLG AGEILTLSLR ERGGRKR

Best Arabidopsis Sequence Match ( AT1G14640.1 )
(BLAST)

001: MFNSMKILPL EAPPADGNLG PLPPSQLTDE EIKENEFQGE QNNSIQTPIA VATHTNPIGI IYPPPEIRKI VETTAQFVSQ NGLAFGNKVK TEKANNANFS
101: FLKSDNPYHG FYRYKVTEYS CHIRDGAQGT DVDDTEDPKL DDESDAKPDL QAQFRAPRKI LEAPEPEKYT VRLPEGIMEA ELDIIKHTAQ FVARNGQSFL
201: RELMRREVNN SQFQFMKPTH SMFTFFTSLV DAYSEVLMPP RDLKEKLRKS VADLTTVLER CLNRLEWDRF QEEEKNKEED EKEKERVQMV MIDWKDFAVV
301: ESIDFADEED KDLPMPMTLE EVIRRSKVSA MEEDEIVEPG KEVEMDMDEE EVKLVAEGMR AANLEEYVGS VEIEEEAPMR IVKNWKRPED RFLTERDSSK
401: VVISRITGEL IPITEMSEHM RISLIDPKFK EQKDRMFAKI RETTLAQDDE IAKNIVGLAR LRPDIFGTTE EEVSNAVKAD IEKKDEQPKQ VIWDGHTGSI
501: GRTANQALTQ NSNGEQGDGV YGDPNSFPGP AAFPPPRPGV PTVRPLPPPQ NLALNLPRPP PSVQYPGAPR PLGVPMMQPM YQQHQLSMSG PHGHPSMMMS
601: RPPQMQPVMR VPPPPGSQFS HMQVPQPYGQ LPPLSMGMMQ PPPMAEMPPP PPPGEAPPPL PEEPEPKRQK LDESALVPED QFLAQHPGPA TIRVSKPNEN
701: DGQVMEITVQ SLSENVGSLK EKIAGEMQIP ANKQK

Arabidopsis Description

SWAP (Suppressor-of-White-APricot)/surp domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4HW92]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.