CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026198.1-P	Field mustard	cytosol, plastid	95.68	96.2
CDY52036	Canola	cytosol, plastid	84.32	83.87
CDX84019	Canola	cytosol	82.16	81.28
CDY71524	Canola	cytosol	36.76	24.03
CDY41093	Canola	cytosol	88.65	21.24
KRH12470	Soybean	cytosol, endoplasmic reticulum, nucleus	70.27	17.31
TraesCS3B01G212000.1	Wheat	cytosol	52.43	16.78
KRH35776	Soybean	cytosol	70.81	16.35
KRH36511	Soybean	cytosol	70.81	16.25
KRG90981	Soybean	nucleus	69.19	16.04
Solyc04g005690.2.1	Tomato	cytosol, nucleus	66.49	16.02
Solyc02g081960.2.1	Tomato	cytosol, nucleus	66.49	15.99
CDY65449	Canola	cytosol	34.05	15.91
VIT_01s0011g02040.t01	Wine grape	cytosol	69.73	15.85
PGSC0003DMT400007349	Potato	cytosol	67.57	15.57
PGSC0003DMT400018892	Potato	cytosol	66.49	15.34
GSMUA_Achr3P03970_001	Banana	cytosol	64.32	15.2
GSMUA_Achr9P12650_001	Banana	cytosol	63.24	14.5
CDY09657	Canola	cytosol, nucleus, plastid	33.51	13.6
TraesCS3A01G503600.1	Wheat	cytosol	56.22	13.15
TraesCS3D01G510100.1	Wheat	cytosol	56.22	13.1
TraesCS3B01G211900.1	Wheat	cytosol	53.51	12.91
Os02t0245000-01	Rice	cytosol	54.59	12.75
TraesCS3B01G566900.1	Wheat	cytosol	56.22	12.56
CDY09653	Canola	nucleus	32.97	12.47
HORVU3Hr1G110920.1	Barley	cytosol	55.14	12.45
EES00535	Sorghum	cytosol	53.51	12.33
Zm00001d040343_P003	Maize	cytosol	52.97	12.14
Zm00001d008293_P001	Maize	cytosol	52.43	12.03
CDY62788	Canola	cytosol	6.49	10.17
CDY38128	Canola	cytosol	20.54	9.5
CDY72308	Canola	cytosol	30.81	8.73
CDY58090	Canola	cytosol	24.32	8.62
CDY44531	Canola	cytosol	22.16	7.36
CDX83169	Canola	plasma membrane	3.24	5.71
CDY21434	Canola	cytosol	2.16	5.63
CDY38126	Canola	cytosol	24.32	5.46
CDX89548	Canola	cytosol	4.32	4.76
CDX89545	Canola	cytosol	4.32	4.76
KXG32223	Sorghum	nucleus, plastid	4.86	4.71
CDY69291	Canola	cytosol, golgi	3.24	3.61
CDY38929	Canola	cytosol	3.24	3.55
CDX71843	Canola	cytosol	3.78	3.21
CDX84020	Canola	nucleus	3.24	2.8
CDY21696	Canola	cytosol	4.86	2.64
CDX81896	Canola	cytosol	3.24	2.6
CDY58992	Canola	cytosol	3.24	2.59
CDY52037	Canola	cytosol	2.16	1.34
CDY45276	Canola	cytosol	1.62	1.04
CDX71844	Canola	cytosol, golgi, plasma membrane	1.08	0.99

Protein Annotations

EnsemblPlants:CDY45277	EnsemblPlantsGene:GSBRNA2T00081719001	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000626	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	PFAM:PF00240	PFscan:PS50053	ProteinID:CDY45277
ProteinID:CDY45277.1	SEG:seg	SMART:SM00213	SUPFAM:SSF54236	UniParc:UPI0004EF2BDD	UniProt:A0A078I5C3
MapMan:35.1	:	:	:	:	:

Description

BnaA06g09470DBnaA06g09470D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I5C3]

Coordinates

chrLK032619:+:96561..97852

Molecular Weight (calculated)

20189.5 Da

IEP (calculated)

7.322

GRAVY (calculated)

-0.733

Length

185 amino acids

Sequence
(BLAST)

001: MPGPPGHQPM MMNRPPQMQH GMPVPPPPGS QFAHLQVPRP YGQLPPTMHG MMQQPPMHGM PPPPPHEEAP PPLPEEPEPK RQKFDESALV PEEQFLAQHP
101: GSATIRVSVP NVDDGQVIEI TVQSLSENVG SLKEKIAGET QIPANKQKLS GKAGFLKDNL SLAHYNVGAG EMLTLSLRER GGRKR

Best Arabidopsis Sequence Match ( AT1G14650.1 )
(BLAST)

001: MFSSMQILPL EAPPTDGKLG PLPPSQLTDQ EVEERELQAE QNNSNLAPPA AVATHTRTIG IIHPPPDIRT IVEKTAQFVS KNGLEFEKRI IVSNEKNAKF
101: NFLKSSDPYH AFYQHKLTEY RAQNKDGAQG TDDSDGTTDP QLDTGAADES EAGDTQPDLQ AQFRIPSKPL EAPEPEKYTV RLPEGITGEE LDIIKLTAQF
201: VARNGKSFLT GLSNRENNNP QFHFMKPTHS MFTFFTSLVD AYSEVLMPPK DLKEKLRKSA ADLTTVLERC LHRLEWDRSQ EQQKKKEEDE KELERVQMAM
301: IDWHDFVVVE SIDFADEEDE ELPPPMTLDE VIRRSKASAM EEDEIVEPGK EVEMEMDEEE VKLVAEGMRA ANLEENVKIE NVHDEEAPMR IVKNWKRPED
401: RIPTERDPTK VVISPITGEL IPINEMSEHM RISLIDPKFK EQKDRMFAKI RETTLAQDDE IAKNIVGLAR LRPDIFGTTE EEVSNAVKAE IEKKKDEQPK
501: QVIWDGHTGS IGRTANQALS QNANGEEQGD GVYGDPNSFP GPAALPPPRP GVPIVRPLPP PPNLALNLPR PPPSAQYPGA PRPLGVPMMQ PMHQQHQLTM
601: PGPPGHPQMM MNRPPQMQPG MHVPPPPGSQ FAHHMQIPRP YGQLPPSAMG MMQPPPMPGM APPPPPEEAP PPLPEEPEAK RQKFDESALV PEDQFLAQHP
701: GPATIRVSKP NENDGQFMEI TVQSLSENVG SLKEKIAGEI QIPANKQKLS GKAGFLKDNM SLAHYNVGAG EILTLSLRER GGRKR

Arabidopsis Description

Probable splicing factor 3A subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXF1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.