CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45277	Canola	cytosol, plastid	21.24	88.65
CDY45276	Canola	cytosol	31.22	83.68
CDX84019	Canola	cytosol	20.21	83.42
CDY52036	Canola	cytosol, plastid	20.08	83.33
AT1G14650.1	Thale cress	cytosol	83.42	82.04
CDX84020	Canola	nucleus	22.67	81.78
CDY52037	Canola	cytosol	31.09	80.54
VIT_01s0011g02040.t01	Wine grape	cytosol	71.24	67.57
Solyc04g005690.2.1	Tomato	cytosol, nucleus	67.1	67.45
Solyc02g081960.2.1	Tomato	cytosol, nucleus	66.84	67.1
PGSC0003DMT400007349	Potato	cytosol	69.69	67.0
KRG90981	Soybean	nucleus	68.91	66.67
PGSC0003DMT400018892	Potato	cytosol	69.17	66.58
KRH12470	Soybean	cytosol, endoplasmic reticulum, nucleus	64.77	66.58
KRH36511	Soybean	cytosol	68.91	66.0
GSMUA_Achr3P03970_001	Banana	cytosol	66.84	65.9
KRH35776	Soybean	cytosol	68.26	65.79
GSMUA_Achr9P12650_001	Banana	cytosol	64.25	61.46
Os02t0245000-01	Rice	cytosol	59.97	58.46
TraesCS3B01G212000.1	Wheat	cytosol	42.88	57.27
EES00535	Sorghum	cytosol	59.2	56.91
TraesCS3D01G510100.1	Wheat	cytosol	58.03	56.42
TraesCS3A01G503600.1	Wheat	cytosol	57.64	56.26
Zm00001d008293_P001	Maize	cytosol	58.29	55.83
Zm00001d040343_P003	Maize	cytosol	58.29	55.76
TraesCS3B01G211900.1	Wheat	cytosol	55.18	55.54
HORVU3Hr1G110920.1	Barley	cytosol	57.64	54.33
TraesCS3B01G566900.1	Wheat	cytosol	57.77	53.86
CDY62788	Canola	cytosol	7.12	46.61
CDX89548	Canola	cytosol	9.2	42.26
CDY21434	Canola	cytosol	3.89	42.25
CDY71524	Canola	cytosol	15.16	41.34
CDX89545	Canola	cytosol	8.94	41.07
CDY38929	Canola	cytosol	8.68	39.65
CDY65449	Canola	cytosol	18.52	36.11
KXG32223	Sorghum	nucleus, plastid	8.55	34.55
CDX83169	Canola	plasma membrane	4.27	31.43
CDY09657	Canola	cytosol, nucleus, plastid	18.01	30.48
CDY21696	Canola	cytosol	13.34	30.21
CDY09653	Canola	nucleus	18.01	28.43
CDY38128	Canola	cytosol	14.38	27.75
CDX81896	Canola	cytosol	7.25	24.24
CDY58992	Canola	cytosol	7.25	24.14
CDY69291	Canola	cytosol, golgi	5.18	24.1
CDY72308	Canola	cytosol	18.39	21.75
CDY58090	Canola	cytosol	13.6	20.11
CDX71843	Canola	cytosol	5.57	19.72
CDY38126	Canola	cytosol	20.6	19.3
CDY44531	Canola	cytosol	13.47	18.67
CDX71844	Canola	cytosol, golgi, plasma membrane	4.27	16.34

Protein Annotations

Gene3D:1.10.10.790	MapMan:16.4.1.2.3.1	Gene3D:3.10.20.90	GO:A0A078HWE7	UniProt:A0A078HWE7	EnsemblPlants:CDY41093
ProteinID:CDY41093	ProteinID:CDY41093.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00072422001	InterPro:IPR000061	InterPro:IPR000626	InterPro:IPR035967	PFAM:PF00240
PFAM:PF01805	PFAM:PF12230	PFscan:PS50053	PFscan:PS50128	PANTHER:PTHR15316	PANTHER:PTHR15316:SF1
InterPro:SF3A1	SMART:SM00213	SMART:SM00648	SUPFAM:SSF109905	SUPFAM:SSF54236	InterPro:SWAP/Surp_sf
InterPro:Surp	UniParc:UPI0004EE3127	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	SEG:seg	:

Description

BnaC05g10840DBnaC05g10840D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HWE7]

Coordinates

chrLK032490:+:60718..63537

Molecular Weight (calculated)

85874.8 Da

IEP (calculated)

4.785

GRAVY (calculated)

-0.720

Length

772 amino acids

Sequence
(BLAST)

001: MFSSSQILPL EAPPTDGNLG PLPPSQLTDQ EAEEKELQSS SNQAPESVAT HTRTIGIIHP PPDIRSIVEK TAQFVSKNGL EFEKRIIASN AKNAKFNFLT
101: SSDPYHAFYQ HKLAEYRAQN QDGAQGDDTD GPDGASLQLD GEAQADLQAQ FRVPPKPLEP PEPEKYTVRL PEGITGEELE YIKLTAQFVA RNGKSFLTGL
201: QSRESNNPQF HFMKPTHSLF SFFTALVDAY FDVLKPPEDL KEKLRKSAAD LTTVLETCLH RLEWDRSQEQ QRKKEEDEKE QERVQMAMID WHDFVVVESI
301: DFADEEDDEL PPPMTLEEVI RRSKVSSAME EDEVVEPGKE VEMEMDEEEV RLVAEGMRAA NLEANGGSVK IETLNDEEAP MRIVKNWKRP EDRIPTERDP
401: TKVVISPITG ELIPISEMSE HMRISLIDPK FKEQKDRMFA KIRETTLAQD DEIAKNIVGL ARLRPDIFGT TEEEVSNAVK AEIEKKKDEQ PSQVIWDGHT
501: GSIGRTANQA LAQNANGEEQ YGDPNSFPGP AALPPPRPGV PIARPLPPPP NLALNVPRPP PSVQYPGPPR PLGVPMMQPM HPQHQLSMPG PPGHQPMMMN
601: RPPQMQHGMP VPPPPGSQFA HLQVPRPYGQ LPPTMHGMMQ PPPMHGMPPP PPHEEAPPPL PEEPEPKRQK FDESALVPEE QFLAQHPGSA TIRVSVPNVD
701: DGQVIEITVQ SLSENVGSLK EKIAGETQIP ANKQKLSGKA GFLKDNLSLA HYNVGAGEML TLSLRERGGR KR

Best Arabidopsis Sequence Match ( AT1G14650.1 )
(BLAST)

001: MFSSMQILPL EAPPTDGKLG PLPPSQLTDQ EVEERELQAE QNNSNLAPPA AVATHTRTIG IIHPPPDIRT IVEKTAQFVS KNGLEFEKRI IVSNEKNAKF
101: NFLKSSDPYH AFYQHKLTEY RAQNKDGAQG TDDSDGTTDP QLDTGAADES EAGDTQPDLQ AQFRIPSKPL EAPEPEKYTV RLPEGITGEE LDIIKLTAQF
201: VARNGKSFLT GLSNRENNNP QFHFMKPTHS MFTFFTSLVD AYSEVLMPPK DLKEKLRKSA ADLTTVLERC LHRLEWDRSQ EQQKKKEEDE KELERVQMAM
301: IDWHDFVVVE SIDFADEEDE ELPPPMTLDE VIRRSKASAM EEDEIVEPGK EVEMEMDEEE VKLVAEGMRA ANLEENVKIE NVHDEEAPMR IVKNWKRPED
401: RIPTERDPTK VVISPITGEL IPINEMSEHM RISLIDPKFK EQKDRMFAKI RETTLAQDDE IAKNIVGLAR LRPDIFGTTE EEVSNAVKAE IEKKKDEQPK
501: QVIWDGHTGS IGRTANQALS QNANGEEQGD GVYGDPNSFP GPAALPPPRP GVPIVRPLPP PPNLALNLPR PPPSAQYPGA PRPLGVPMMQ PMHQQHQLTM
601: PGPPGHPQMM MNRPPQMQPG MHVPPPPGSQ FAHHMQIPRP YGQLPPSAMG MMQPPPMPGM APPPPPEEAP PPLPEEPEAK RQKFDESALV PEDQFLAQHP
701: GPATIRVSKP NENDGQFMEI TVQSLSENVG SLKEKIAGEI QIPANKQKLS GKAGFLKDNM SLAHYNVGAG EILTLSLRER GGRKR

Arabidopsis Description

Probable splicing factor 3A subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXF1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.