Factsheet for AT1G14650.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra016688.1-P	Field mustard	cytosol	74.14	84.1
CDY41093	Canola	cytosol	82.04	83.42
AT1G14640.1	Thale cress	cytosol	72.48	77.42
CDY45276	Canola	cytosol	27.9	76.04
CDY52037	Canola	cytosol	28.79	75.84
CDX84020	Canola	nucleus	20.38	74.77
AT5G06890.1	Thale cress	cytosol	5.99	71.21
Solyc04g005690.2.1	Tomato	cytosol, nucleus	66.37	67.84
VIT_01s0011g02040.t01	Wine grape	cytosol	69.94	67.44
KRH12470	Soybean	cytosol, endoplasmic reticulum, nucleus	64.46	67.38
PGSC0003DMT400007349	Potato	cytosol	68.66	67.12
Solyc02g081960.2.1	Tomato	cytosol, nucleus	65.22	66.58
KRG90981	Soybean	nucleus	67.64	66.54
KRH36511	Soybean	cytosol	68.28	66.5
KRH35776	Soybean	cytosol	67.52	66.17
PGSC0003DMT400018892	Potato	cytosol	67.26	65.84
GSMUA_Achr3P03970_001	Banana	cytosol	63.95	64.11
GSMUA_Achr9P12650_001	Banana	cytosol	62.93	61.21
TraesCS3B01G212000.1	Wheat	cytosol	42.04	57.09
Os02t0245000-01	Rice	cytosol	57.45	56.94
EES00535	Sorghum	cytosol	57.96	56.66
Zm00001d008293_P001	Maize	cytosol	57.71	56.2
Zm00001d040343_P003	Maize	cytosol	57.58	56.01
TraesCS3B01G211900.1	Wheat	cytosol	54.14	55.41
TraesCS3D01G510100.1	Wheat	cytosol	55.67	55.04
TraesCS3A01G503600.1	Wheat	cytosol	55.16	54.74
HORVU3Hr1G110920.1	Barley	cytosol	55.29	52.99
TraesCS3B01G566900.1	Wheat	cytosol	55.67	52.78
CDY62788	Canola	cytosol	7.39	49.15
CDY21434	Canola	cytosol	4.08	45.07
Bra000608.1-P	Field mustard	cytosol	4.08	45.07
CDX89548	Canola	cytosol	8.79	41.07
CDY38929	Canola	cytosol	8.54	39.65
CDX89545	Canola	cytosol	8.41	39.29
AT5G12280.1	Thale cress	cytosol	19.11	35.8
KXG32223	Sorghum	nucleus, plastid	8.66	35.6
Bra032181.1-P	Field mustard	cytosol	9.68	35.19
CDX83169	Canola	plasma membrane	4.46	33.33
AT3G27600.1	Thale cress	cytosol	12.36	30.99
AT3G49130.1	Thale cress	cytosol	11.85	30.29
AT4G16200.1	Thale cress	nucleus	8.41	22.92
AT5G06520.1	Thale cress	cytosol	15.41	17.82
AT1G18050.1	Thale cress	nucleus	3.31	11.61

Protein Annotations

Gene3D:1.10.10.790	MapMan:16.4.1.2.3.1	PDB:1WE6	Gene3D:3.10.20.90	EntrezGene:838027	UniProt:A0A178W732
ProteinID:AAF63169.1	ProteinID:AEE29196.1	ProteinID:AEE29197.1	EMBL:AK226440	ProteinID:ANM61051.1	ArrayExpress:AT1G14650
EnsemblPlantsGene:AT1G14650	RefSeq:AT1G14650	TAIR:AT1G14650	RefSeq:AT1G14650-TAIR-G	EnsemblPlants:AT1G14650.1	TAIR:AT1G14650.1
EMBL:AY081293	Unigene:At.22146	ncoils:Coil	GO:GO:0000381	GO:GO:0000389	GO:GO:0000398
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005681	GO:GO:0005684	GO:GO:0005686
GO:GO:0006139	GO:GO:0006396	GO:GO:0006397	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380
GO:GO:0009987	GO:GO:0016043	GO:GO:0071004	GO:GO:0071013	InterPro:IPR000061	InterPro:IPR000626
InterPro:IPR035967	RefSeq:NP_001117289.1	RefSeq:NP_001319005.1	RefSeq:NP_172917.1	ProteinID:OAP14279.1	PFAM:PF00240
PFAM:PF01805	PFAM:PF12230	PO:PO:0000005	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230
PO:PO:0000293	PO:PO:0001017	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185
PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115
PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006
PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031
PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038
PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025195	PO:PO:0025281	PFscan:PS50053
PFscan:PS50128	PANTHER:PTHR15316	PANTHER:PTHR15316:SF1	UniProt:Q8RXF1	InterPro:SF3A1	SMART:SM00213
SMART:SM00648	SUPFAM:SSF109905	SUPFAM:SSF54236	InterPro:SWAP/Surp_sf	InterPro:Surp	UniParc:UPI0000162D7D
InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	SEG:seg	:	:	:

Description

Probable splicing factor 3A subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXF1]

Coordinates

chr1:+:5027316..5031883

Molecular Weight (calculated)

87599.2 Da

IEP (calculated)

4.804

GRAVY (calculated)

-0.748

Length

785 amino acids

Sequence
(BLAST)

001: MFSSMQILPL EAPPTDGKLG PLPPSQLTDQ EVEERELQAE QNNSNLAPPA AVATHTRTIG IIHPPPDIRT IVEKTAQFVS KNGLEFEKRI IVSNEKNAKF
101: NFLKSSDPYH AFYQHKLTEY RAQNKDGAQG TDDSDGTTDP QLDTGAADES EAGDTQPDLQ AQFRIPSKPL EAPEPEKYTV RLPEGITGEE LDIIKLTAQF
201: VARNGKSFLT GLSNRENNNP QFHFMKPTHS MFTFFTSLVD AYSEVLMPPK DLKEKLRKSA ADLTTVLERC LHRLEWDRSQ EQQKKKEEDE KELERVQMAM
301: IDWHDFVVVE SIDFADEEDE ELPPPMTLDE VIRRSKASAM EEDEIVEPGK EVEMEMDEEE VKLVAEGMRA ANLEENVKIE NVHDEEAPMR IVKNWKRPED
401: RIPTERDPTK VVISPITGEL IPINEMSEHM RISLIDPKFK EQKDRMFAKI RETTLAQDDE IAKNIVGLAR LRPDIFGTTE EEVSNAVKAE IEKKKDEQPK
501: QVIWDGHTGS IGRTANQALS QNANGEEQGD GVYGDPNSFP GPAALPPPRP GVPIVRPLPP PPNLALNLPR PPPSAQYPGA PRPLGVPMMQ PMHQQHQLTM
601: PGPPGHPQMM MNRPPQMQPG MHVPPPPGSQ FAHHMQIPRP YGQLPPSAMG MMQPPPMPGM APPPPPEEAP PPLPEEPEAK RQKFDESALV PEDQFLAQHP
701: GPATIRVSKP NENDGQFMEI TVQSLSENVG SLKEKIAGEI QIPANKQKLS GKAGFLKDNM SLAHYNVGAG EILTLSLRER GGRKR

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.