CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY62788	Canola	cytosol	13.61	22.03
CDY38929	Canola	cytosol	18.85	21.3
CDX89545	Canola	cytosol	18.32	20.83
CDX89548	Canola	cytosol	18.32	20.83
CDY52037	Canola	cytosol	31.41	20.13
CDY45276	Canola	cytosol	22.51	14.93
AT4G16200.1	Thale cress	nucleus	17.8	11.81
EES00535	Sorghum	cytosol	48.17	11.46
Bra032181.1-P	Field mustard	cytosol	12.04	10.65
Os02t0245000-01	Rice	cytosol	43.98	10.61
TraesCS3D01G510100.1	Wheat	cytosol	43.46	10.45
TraesCS3B01G211900.1	Wheat	cytosol	41.36	10.3
CDX84020	Canola	nucleus	11.52	10.28
TraesCS3A01G503600.1	Wheat	cytosol	42.41	10.24
HORVU3Hr1G110920.1	Barley	cytosol	43.46	10.13
TraesCS3B01G566900.1	Wheat	cytosol	42.93	9.9
GSMUA_Achr3P03970_001	Banana	cytosol	37.17	9.07
KRH12470	Soybean	cytosol, endoplasmic reticulum, nucleus	35.6	9.05
KRH36511	Soybean	cytosol	37.17	8.81
KRG90981	Soybean	nucleus	36.65	8.77
KRH35776	Soybean	cytosol	36.65	8.74
AT1G14650.1	Thale cress	cytosol	35.6	8.66
VIT_01s0011g02040.t01	Wine grape	cytosol	36.65	8.6
GSMUA_Achr9P12650_001	Banana	cytosol	36.13	8.55
CDY41093	Canola	cytosol	34.55	8.55
CDX71844	Canola	cytosol, golgi, plasma membrane	8.9	8.42
PGSC0003DMT400018892	Potato	cytosol	34.55	8.23
PGSC0003DMT400007349	Potato	cytosol	34.55	8.22
Solyc02g081960.2.1	Tomato	cytosol, nucleus	32.98	8.19
Solyc04g005690.2.1	Tomato	cytosol, nucleus	32.46	8.07
CDY21696	Canola	cytosol	13.09	7.33
AT5G12280.1	Thale cress	cytosol	15.18	6.92
CDY65449	Canola	cytosol	14.14	6.82
CDY09657	Canola	cytosol, nucleus, plastid	16.23	6.8
CDY09653	Canola	nucleus	16.75	6.54
Bra031050.1-P	Field mustard	cytosol	13.61	6.53
AT1G14640.1	Thale cress	cytosol	24.61	6.39
AT3G27600.1	Thale cress	cytosol	9.42	5.75
CDX81896	Canola	cytosol	6.81	5.63
CDY58992	Canola	cytosol	6.81	5.6
CDY69291	Canola	cytosol, golgi	4.71	5.42
Bra026198.1-P	Field mustard	cytosol, plastid	4.71	4.89
CDY45277	Canola	cytosol, plastid	4.71	4.86
CDX84019	Canola	cytosol	4.19	4.28
CDY21434	Canola	cytosol	1.57	4.23
Bra000608.1-P	Field mustard	cytosol	1.57	4.23
CDY71524	Canola	cytosol	5.76	3.89
CDY72308	Canola	cytosol	13.09	3.83
CDX83169	Canola	plasma membrane	2.09	3.81
CDY52036	Canola	cytosol, plastid	3.66	3.76
Bra016688.1-P	Field mustard	cytosol	13.61	3.76
AT5G06520.1	Thale cress	cytosol	13.09	3.68
CDY38126	Canola	cytosol	15.18	3.52
AT3G49130.1	Thale cress	cytosol	5.24	3.26
CDY44531	Canola	cytosol	8.9	3.05
CDY58090	Canola	cytosol	7.85	2.87
Bra007503.1-P	Field mustard	cytosol	7.33	2.68
CDY38128	Canola	cytosol	4.71	2.25
Bra023557.1-P	Field mustard	mitochondrion	2.09	1.68
AT5G06890.1	Thale cress	cytosol	0.52	1.52
TraesCS3B01G212000.1	Wheat	cytosol	4.19	1.38
CDX71843	Canola	cytosol	1.57	1.38
AT1G18050.1	Thale cress	nucleus	1.57	1.34

Protein Annotations

Gene3D:1.10.10.790	MapMan:35.1	UniProt:A0A1B6Q2S7	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
InterPro:IPR000061	InterPro:IPR035967	EnsemblPlants:KXG32223	ProteinID:KXG32223	ProteinID:KXG32223.1	PFAM:PF01805
PFscan:PS50128	PANTHER:PTHR15316	PANTHER:PTHR15316:SF1	SMART:SM00648	EnsemblPlantsGene:SORBI_3003G122900	SUPFAM:SSF109905
InterPro:SWAP/Surp_sf	InterPro:Surp	UniParc:UPI00081AD8DE	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:+:11174347..11175215

Molecular Weight (calculated)

19842.1 Da

IEP (calculated)

6.011

GRAVY (calculated)

-0.510

Length

191 amino acids

Sequence
(BLAST)

001: MSVPTRTKSG PDIHITDPPS LPPSHPRARS HGSLDSSSPL LPFMAAAMGT SIDDDQQLQE APPKPPPPGA KADPPATVAT HTRTIGIIHP PPDIRVIIEK
101: AATFVVKNGP EFERRIISHN HGNAKFNFLQ PSDPYHAYYQ HRVFEIGAAP PGADAPSGAE TDGDPAEAPA SAPADGGAAL APADGAAEGR T

Best Arabidopsis Sequence Match ( AT1G14650.1 )
(BLAST)

001: MFSSMQILPL EAPPTDGKLG PLPPSQLTDQ EVEERELQAE QNNSNLAPPA AVATHTRTIG IIHPPPDIRT IVEKTAQFVS KNGLEFEKRI IVSNEKNAKF
101: NFLKSSDPYH AFYQHKLTEY RAQNKDGAQG TDDSDGTTDP QLDTGAADES EAGDTQPDLQ AQFRIPSKPL EAPEPEKYTV RLPEGITGEE LDIIKLTAQF
201: VARNGKSFLT GLSNRENNNP QFHFMKPTHS MFTFFTSLVD AYSEVLMPPK DLKEKLRKSA ADLTTVLERC LHRLEWDRSQ EQQKKKEEDE KELERVQMAM
301: IDWHDFVVVE SIDFADEEDE ELPPPMTLDE VIRRSKASAM EEDEIVEPGK EVEMEMDEEE VKLVAEGMRA ANLEENVKIE NVHDEEAPMR IVKNWKRPED
401: RIPTERDPTK VVISPITGEL IPINEMSEHM RISLIDPKFK EQKDRMFAKI RETTLAQDDE IAKNIVGLAR LRPDIFGTTE EEVSNAVKAE IEKKKDEQPK
501: QVIWDGHTGS IGRTANQALS QNANGEEQGD GVYGDPNSFP GPAALPPPRP GVPIVRPLPP PPNLALNLPR PPPSAQYPGA PRPLGVPMMQ PMHQQHQLTM
601: PGPPGHPQMM MNRPPQMQPG MHVPPPPGSQ FAHHMQIPRP YGQLPPSAMG MMQPPPMPGM APPPPPEEAP PPLPEEPEAK RQKFDESALV PEDQFLAQHP
701: GPATIRVSKP NENDGQFMEI TVQSLSENVG SLKEKIAGEI QIPANKQKLS GKAGFLKDNM SLAHYNVGAG EILTLSLRER GGRKR

Arabidopsis Description

Probable splicing factor 3A subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXF1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.