Factsheet for TraesCS3B01G211900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G212000.1	Wheat	cytosol	73.01	96.89
Os02t0245000-01	Rice	cytosol	78.1	75.63
TraesCS3B01G566900.1	Wheat	cytosol	81.36	75.36
EES00535	Sorghum	cytosol	77.97	74.47
Zm00001d008293_P001	Maize	cytosol	77.18	73.45
Zm00001d040343_P003	Maize	cytosol	76.92	73.11
Solyc02g081960.2.1	Tomato	cytosol, nucleus	58.93	58.78
Solyc04g005690.2.1	Tomato	cytosol, nucleus	58.8	58.72
GSMUA_Achr3P03970_001	Banana	cytosol	59.71	58.49
KRG90981	Soybean	nucleus	60.63	58.27
GSMUA_Achr9P12650_001	Banana	cytosol	60.89	57.87
KRH12470	Soybean	cytosol, endoplasmic reticulum, nucleus	56.58	57.79
KRH36511	Soybean	cytosol	60.37	57.44
KRH35776	Soybean	cytosol	59.97	57.43
VIT_01s0011g02040.t01	Wine grape	cytosol	60.5	57.0
PGSC0003DMT400007349	Potato	cytosol	59.58	56.91
CDX84020	Canola	nucleus	15.78	56.54
PGSC0003DMT400018892	Potato	cytosol	58.93	56.36
Bra016688.1-P	Field mustard	cytosol	50.85	56.36
Bra026198.1-P	Field mustard	cytosol, plastid	13.43	55.98
CDY41093	Canola	cytosol	55.54	55.18
AT1G14650.1	Thale cress	cytosol	55.41	54.14
CDY45277	Canola	cytosol, plastid	12.91	53.51
CDY52036	Canola	cytosol, plastid	12.91	53.23
CDX84019	Canola	cytosol	12.52	51.34
CDY52037	Canola	cytosol	19.69	50.67
AT5G06890.1	Thale cress	cytosol	4.3	50.0
AT1G14640.1	Thale cress	cytosol	47.46	49.52
CDY45276	Canola	cytosol	18.38	48.96
KXG32223	Sorghum	nucleus, plastid	10.3	41.36
Bra000608.1-P	Field mustard	cytosol	3.52	38.03
CDY21434	Canola	cytosol	3.52	38.03
CDY38929	Canola	cytosol	8.08	36.69
CDY62788	Canola	cytosol	5.48	35.59
CDX89545	Canola	cytosol	7.69	35.12
CDX89548	Canola	cytosol	7.69	35.12
CDY71524	Canola	cytosol	11.99	32.51
Bra032181.1-P	Field mustard	cytosol	8.74	31.02
CDX83169	Canola	plasma membrane	4.04	29.52
CDY65449	Canola	cytosol	15.12	29.29
AT5G12280.1	Thale cress	cytosol	15.52	28.4
CDY21696	Canola	cytosol	11.73	26.39
CDY09657	Canola	cytosol, nucleus, plastid	14.6	24.56
Bra031050.1-P	Field mustard	cytosol	12.52	24.12
Bra023557.1-P	Field mustard	mitochondrion	7.43	23.95
AT3G49130.1	Thale cress	cytosol	9.52	23.78
CDY09653	Canola	nucleus	14.86	23.31
CDY69291	Canola	cytosol, golgi	4.95	22.89
AT3G27600.1	Thale cress	cytosol	9.26	22.68
CDY38128	Canola	cytosol	11.47	22.0
CDX81896	Canola	cytosol	6.0	19.91
CDY58992	Canola	cytosol	6.0	19.83
AT4G16200.1	Thale cress	nucleus	7.3	19.44
CDX71843	Canola	cytosol	5.48	19.27
CDY72308	Canola	cytosol	16.17	18.99
CDY58090	Canola	cytosol	12.39	18.2
Bra007503.1-P	Field mustard	cytosol	12.26	17.97
CDY44531	Canola	cytosol	12.91	17.77
CDY38126	Canola	cytosol	16.56	15.41
AT5G06520.1	Thale cress	cytosol	12.91	14.58
CDX71844	Canola	cytosol, golgi, plasma membrane	3.78	14.36
AT1G18050.1	Thale cress	nucleus	3.0	10.27

Protein Annotations

Gene3D:1.10.10.790	MapMan:16.4.1.2.3.1	Gene3D:3.10.20.90	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	InterPro:IPR000061	InterPro:IPR000626	InterPro:IPR035967	PFAM:PF00240
PFAM:PF01805	PFAM:PF12230	PFscan:PS50053	PFscan:PS50128	PANTHER:PTHR15316	PANTHER:PTHR15316:SF1
InterPro:SF3A1	SMART:SM00213	SMART:SM00648	SUPFAM:SSF109905	SUPFAM:SSF54236	InterPro:SWAP/Surp_sf
InterPro:Surp	EnsemblPlantsGene:TraesCS3B01G211900	EnsemblPlants:TraesCS3B01G211900.1	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	SEG:seg

Description

No Description!

Coordinates

chr3B:+:251181561..251183947

Molecular Weight (calculated)

85094.7 Da

IEP (calculated)

5.050

GRAVY (calculated)

-0.565

Length

767 amino acids

Sequence
(BLAST)

001: MPLLSSPDAG DHQQQLQIVP SSVGVAPSKP EPAPTVSTHT RTIGIIHPPP DIRVIVEKTA TFVVNNGPEF ERRIVAHNQG NAKFSFLQPS DPYHAYYQHR
101: VSEIAEHSPA ADASAAPESE DGQPLPSDSA DGADDKPDHS APFRVAPLTK VLVPPKAELY MVRLPEGITG EELDIIKLTA QFVARNGKNF LTSLAHREST
201: NSQFNFIRPT HSMFPFFTMF ADVYTRVLSP DEGVPALTKE LREGSKDLTT VLERCLNRLE WDRSQEQAKQ QAEDELELER VQMSMIDWHD FVVVATIEFA
301: DDEYEGLPVP PTLEELKRRK RMETLGEEEP MELAEPAKDV EMEMDEEEMQ LVEEGMKAAR LEENGGGAQV RVAGDQEPPM RIVKNYKRPE ERIPAARDPT
401: KFVVSTITGE LIPISEMGEH MRISLIDPKY KEQKERMLAK IKETTLAPDD EVVNNIVGLA RTRPDIFGTT EEEVSNAVKA EIEKKKDEQP KQVIWDGHSG
501: SIGQTATQAM SMGGEEQVDA SNVPGPAPLP RFVMPLPQPP QPLSLVNVPR FTPNPMPYHL QTPAHHKQGV PHMMSNMHPQ MIRMSGPMGP MPNNIPPRPG
601: HITQFMPGPP RFPMPPTPHM QTTPTMVNPI GIPQAPPPLP PQPPAEEQPP LPEEPEPKRQ RTDDASLIPA EQFLVQHPGP ARMLVSVPNL DEGSLRGQVL
701: EISVHSLSDT VGSLKEQIAG ELQLPANKQK LSVRTSFLKD NLSLAYYNVG PGVVINLTLR ERGGRKK

Best Arabidopsis Sequence Match ( AT1G14650.1 )
(BLAST)

001: MFSSMQILPL EAPPTDGKLG PLPPSQLTDQ EVEERELQAE QNNSNLAPPA AVATHTRTIG IIHPPPDIRT IVEKTAQFVS KNGLEFEKRI IVSNEKNAKF
101: NFLKSSDPYH AFYQHKLTEY RAQNKDGAQG TDDSDGTTDP QLDTGAADES EAGDTQPDLQ AQFRIPSKPL EAPEPEKYTV RLPEGITGEE LDIIKLTAQF
201: VARNGKSFLT GLSNRENNNP QFHFMKPTHS MFTFFTSLVD AYSEVLMPPK DLKEKLRKSA ADLTTVLERC LHRLEWDRSQ EQQKKKEEDE KELERVQMAM
301: IDWHDFVVVE SIDFADEEDE ELPPPMTLDE VIRRSKASAM EEDEIVEPGK EVEMEMDEEE VKLVAEGMRA ANLEENVKIE NVHDEEAPMR IVKNWKRPED
401: RIPTERDPTK VVISPITGEL IPINEMSEHM RISLIDPKFK EQKDRMFAKI RETTLAQDDE IAKNIVGLAR LRPDIFGTTE EEVSNAVKAE IEKKKDEQPK
501: QVIWDGHTGS IGRTANQALS QNANGEEQGD GVYGDPNSFP GPAALPPPRP GVPIVRPLPP PPNLALNLPR PPPSAQYPGA PRPLGVPMMQ PMHQQHQLTM
601: PGPPGHPQMM MNRPPQMQPG MHVPPPPGSQ FAHHMQIPRP YGQLPPSAMG MMQPPPMPGM APPPPPEEAP PPLPEEPEAK RQKFDESALV PEDQFLAQHP
701: GPATIRVSKP NENDGQFMEI TVQSLSENVG SLKEKIAGEI QIPANKQKLS GKAGFLKDNM SLAHYNVGAG EILTLSLRER GGRKR

Arabidopsis Description

Probable splicing factor 3A subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXF1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.