Factsheet for PGSC0003DMT400007349

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g005690.2.1	Tomato	cytosol, nucleus	93.9	98.18
PGSC0003DMT400018892	Potato	cytosol	91.53	91.65
VIT_01s0011g02040.t01	Wine grape	cytosol	77.71	76.66
KRH12470	Soybean	cytosol, endoplasmic reticulum, nucleus	70.36	75.23
KRH35776	Soybean	cytosol	74.97	75.16
KRH36511	Soybean	cytosol	74.84	74.57
KRG90981	Soybean	nucleus	74.1	74.56
GSMUA_Achr3P03970_001	Banana	cytosol	68.74	70.5
CDY41093	Canola	cytosol	67.0	69.69
Bra016688.1-P	Field mustard	cytosol	59.4	68.93
GSMUA_Achr9P12650_001	Banana	cytosol	69.12	68.77
AT1G14650.1	Thale cress	cytosol	67.12	68.66
CDY45277	Canola	cytosol, plastid	15.57	67.57
Bra026198.1-P	Field mustard	cytosol, plastid	15.44	67.39
CDX84020	Canola	nucleus	17.93	67.29
CDY52036	Canola	cytosol, plastid	15.44	66.67
CDY45276	Canola	cytosol	23.66	65.97
CDY52037	Canola	cytosol	24.16	65.1
CDX84019	Canola	cytosol	14.82	63.64
AT1G14640.1	Thale cress	cytosol	57.66	62.99
AT5G06890.1	Thale cress	cytosol	5.11	62.12
TraesCS3B01G212000.1	Wheat	cytosol	44.46	61.76
Os02t0245000-01	Rice	cytosol	60.52	61.36
EES00535	Sorghum	cytosol	60.52	60.52
Zm00001d008293_P001	Maize	cytosol	60.52	60.3
Zm00001d040343_P003	Maize	cytosol	60.4	60.1
TraesCS3D01G510100.1	Wheat	cytosol	59.03	59.7
TraesCS3B01G211900.1	Wheat	cytosol	56.91	59.58
TraesCS3A01G503600.1	Wheat	cytosol	58.66	59.54
HORVU3Hr1G110920.1	Barley	cytosol	58.9	57.75
TraesCS3B01G566900.1	Wheat	cytosol	59.28	57.49
Bra000608.1-P	Field mustard	cytosol	4.11	46.48
CDY21434	Canola	cytosol	4.11	46.48
CDY62788	Canola	cytosol	5.98	40.68
CDY71524	Canola	cytosol	13.32	37.81
CDX89545	Canola	cytosol	7.47	35.71
CDX89548	Canola	cytosol	7.47	35.71
CDY38929	Canola	cytosol	7.47	35.5
AT5G12280.1	Thale cress	cytosol	18.31	35.08
KXG32223	Sorghum	nucleus, plastid	8.22	34.55
CDX83169	Canola	plasma membrane	4.48	34.29
CDY65449	Canola	cytosol	16.69	33.84
Bra032181.1-P	Field mustard	cytosol	9.09	33.8
Bra023557.1-P	Field mustard	mitochondrion	8.47	28.57
AT3G49130.1	Thale cress	cytosol	10.83	28.34
AT3G27600.1	Thale cress	cytosol	10.71	27.48
CDY09657	Canola	cytosol, nucleus, plastid	15.57	27.41
CDY21696	Canola	cytosol	11.46	26.98
CDY38128	Canola	cytosol	13.08	26.25
CDY09653	Canola	nucleus	15.57	25.56
CDY69291	Canola	cytosol, golgi	5.23	25.3
CDX81896	Canola	cytosol	7.22	25.11
CDY58992	Canola	cytosol	7.22	25.0
Bra031050.1-P	Field mustard	cytosol	12.08	24.37
AT4G16200.1	Thale cress	nucleus	7.6	21.18
CDY58090	Canola	cytosol	12.95	19.92
Bra007503.1-P	Field mustard	cytosol	12.95	19.89
CDX71843	Canola	cytosol	5.35	19.72
CDY72308	Canola	cytosol	15.82	19.45
CDY44531	Canola	cytosol	12.83	18.49
CDY38126	Canola	cytosol	18.31	17.84
CDX71844	Canola	cytosol, golgi, plasma membrane	4.23	16.83
AT5G06520.1	Thale cress	cytosol	13.7	16.2
AT1G18050.1	Thale cress	nucleus	3.24	11.61

Protein Annotations

Gene3D:1.10.10.790	MapMan:16.4.1.2.3.1	Gene3D:3.10.20.90	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	InterPro:IPR000061	InterPro:IPR000626	InterPro:IPR035967	UniProt:M0ZSU7
PFAM:PF00240	PFAM:PF01805	PFAM:PF12230	EnsemblPlantsGene:PGSC0003DMG400002827	PGSC:PGSC0003DMG400002827	EnsemblPlants:PGSC0003DMT400007349
PRINTS:PR01217	PFscan:PS50053	PFscan:PS50128	PANTHER:PTHR15316	PANTHER:PTHR15316:SF1	InterPro:SF3A1
SMART:SM00213	SMART:SM00648	SUPFAM:SSF109905	SUPFAM:SSF54236	InterPro:SWAP/Surp_sf	InterPro:Surp
UniParc:UPI0002964A5B	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	SEG:seg	:	:

Description

Spliceosome associated protein [Source:PGSC_GENE;Acc:PGSC0003DMG400002827]

Coordinates

chr4:+:313021..317771

Molecular Weight (calculated)

88889.6 Da

IEP (calculated)

4.635

GRAVY (calculated)

-0.691

Length

803 amino acids

Sequence
(BLAST)

001: MFGTTTILPL PAPPLDGNLG PTPPAQVVEE PEDDTMEENE EDNNKANKVP TSVATHTRTI GIIYPPPDIR SIVDKTSQFV AKNGPEFEKR IVLNNAGNAK
101: FNFLNASDPY HAYYQHRLAD ARAQNQASGE QPTQPDDNEA ASAPPTADGA EATAKPDPSA QFRPVRKVLE PPEAEQYTVR LPEGITGEEL DIIKLTAQFV
201: ARNGKSFLTG LTSREINNPQ FHFLKPTHSM FMFFTSLADA YSKVLMPPKG LTDKLQKSAA DMTTVLERCL HRLEWERSQE QARQKAEDEI EQERVQMAMI
301: DWHDFVVVET IDFADDEDQD LPPPMTLEEV IRRSKMPTLE EEEYVEPGKE VEMEMDEEEV QLVEEGMRAA TLEENGGIKS AEAMAIPVEQ DPPMRIVKNW
401: KRPEERILAE RDPTKYVVSP ITGELIPINE MSEHMRISLI DPKYKEQKDR MFAKIKETTL AQDDEISRNI VGLARTRPDI FGTTEEEVSN AVKAEIEKKT
501: EEPKQVIWDG HTGSIGRTAN QAMSQNSDEQ NDAANDARNL PGPQAPPPPR PGFPSIRPLP PPPGLALNIP RPPNTVQYST PGVAAPPPPR PPMVNMIPQV
601: RPPPPPMPQM PGQQNFMVNR PPMPPSMGMN SHSLPIPPPP GSQFTPLGAP RPFVPHPMSQ PGMSMVPPPP MPQGMPPPPP PEEAPPLPEE PEPKRQKLDE
701: SILIPEDQFL AQHSGPARIN ISVPNTDEGN LKGQVLEITV QSLSETIASL KEKISGEIQL PANKQKLSGK AGFLKDNLSL AYYNVASGET LGLSLRERGG
801: RKR

Best Arabidopsis Sequence Match ( AT1G14650.1 )
(BLAST)

001: MFSSMQILPL EAPPTDGKLG PLPPSQLTDQ EVEERELQAE QNNSNLAPPA AVATHTRTIG IIHPPPDIRT IVEKTAQFVS KNGLEFEKRI IVSNEKNAKF
101: NFLKSSDPYH AFYQHKLTEY RAQNKDGAQG TDDSDGTTDP QLDTGAADES EAGDTQPDLQ AQFRIPSKPL EAPEPEKYTV RLPEGITGEE LDIIKLTAQF
201: VARNGKSFLT GLSNRENNNP QFHFMKPTHS MFTFFTSLVD AYSEVLMPPK DLKEKLRKSA ADLTTVLERC LHRLEWDRSQ EQQKKKEEDE KELERVQMAM
301: IDWHDFVVVE SIDFADEEDE ELPPPMTLDE VIRRSKASAM EEDEIVEPGK EVEMEMDEEE VKLVAEGMRA ANLEENVKIE NVHDEEAPMR IVKNWKRPED
401: RIPTERDPTK VVISPITGEL IPINEMSEHM RISLIDPKFK EQKDRMFAKI RETTLAQDDE IAKNIVGLAR LRPDIFGTTE EEVSNAVKAE IEKKKDEQPK
501: QVIWDGHTGS IGRTANQALS QNANGEEQGD GVYGDPNSFP GPAALPPPRP GVPIVRPLPP PPNLALNLPR PPPSAQYPGA PRPLGVPMMQ PMHQQHQLTM
601: PGPPGHPQMM MNRPPQMQPG MHVPPPPGSQ FAHHMQIPRP YGQLPPSAMG MMQPPPMPGM APPPPPEEAP PPLPEEPEAK RQKFDESALV PEDQFLAQHP
701: GPATIRVSKP NENDGQFMEI TVQSLSENVG SLKEKIAGEI QIPANKQKLS GKAGFLKDNM SLAHYNVGAG EILTLSLRER GGRKR

Arabidopsis Description

Probable splicing factor 3A subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXF1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.