Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY52037 | Canola | cytosol | 73.36 | 52.68 |
| CDY45276 | Canola | cytosol | 59.81 | 44.44 |
| CDY21434 | Canola | cytosol | 12.62 | 38.03 |
| CDX89545 | Canola | cytosol | 20.56 | 26.19 |
| CDX89548 | Canola | cytosol | 20.56 | 26.19 |
| Bra016688.1-P | Field mustard | cytosol | 84.58 | 26.16 |
| CDY38929 | Canola | cytosol | 20.56 | 26.04 |
| CDX83169 | Canola | plasma membrane | 12.62 | 25.71 |
| CDY62788 | Canola | cytosol | 14.02 | 25.42 |
| CDY41093 | Canola | cytosol | 81.78 | 22.67 |
| AT1G14650.1 | Thale cress | cytosol | 74.77 | 20.38 |
| Solyc04g005690.2.1 | Tomato | cytosol, nucleus | 67.29 | 18.75 |
| CDX81896 | Canola | cytosol | 20.09 | 18.61 |
| Solyc02g081960.2.1 | Tomato | cytosol, nucleus | 66.82 | 18.6 |
| CDY58992 | Canola | cytosol | 20.09 | 18.53 |
| PGSC0003DMT400007349 | Potato | cytosol | 67.29 | 17.93 |
| CDY21696 | Canola | cytosol | 28.5 | 17.89 |
| PGSC0003DMT400018892 | Potato | cytosol | 66.82 | 17.83 |
| KRG90981 | Soybean | nucleus | 66.36 | 17.79 |
| GSMUA_Achr3P03970_001 | Banana | cytosol | 64.49 | 17.62 |
| KRH35776 | Soybean | cytosol | 65.89 | 17.6 |
| VIT_01s0011g02040.t01 | Wine grape | cytosol | 66.82 | 17.57 |
| KRH36511 | Soybean | cytosol | 65.89 | 17.49 |
| CDY65449 | Canola | cytosol | 30.37 | 16.41 |
| GSMUA_Achr9P12650_001 | Banana | cytosol | 61.68 | 16.36 |
| Os02t0245000-01 | Rice | cytosol | 59.35 | 16.04 |
| EES00535 | Sorghum | cytosol | 59.35 | 15.82 |
| TraesCS3B01G211900.1 | Wheat | cytosol | 56.54 | 15.78 |
| Zm00001d008293_P001 | Maize | cytosol | 59.35 | 15.76 |
| Zm00001d040343_P003 | Maize | cytosol | 58.88 | 15.61 |
| KRH12470 | Soybean | cytosol, endoplasmic reticulum, nucleus | 53.74 | 15.31 |
| CDY69291 | Canola | cytosol, golgi | 11.68 | 15.06 |
| TraesCS3D01G510100.1 | Wheat | cytosol | 54.67 | 14.74 |
| CDX71843 | Canola | cytosol | 14.95 | 14.68 |
| TraesCS3A01G503600.1 | Wheat | cytosol | 53.74 | 14.54 |
| TraesCS3B01G212000.1 | Wheat | cytosol | 39.25 | 14.53 |
| HORVU3Hr1G110920.1 | Barley | cytosol | 54.67 | 14.29 |
| TraesCS3B01G566900.1 | Wheat | cytosol | 55.14 | 14.25 |
| CDY71524 | Canola | cytosol | 18.69 | 14.13 |
| KXG32223 | Sorghum | nucleus, plastid | 10.28 | 11.52 |
| CDY38128 | Canola | cytosol | 20.56 | 11.0 |
| CDY09657 | Canola | cytosol, nucleus, plastid | 22.43 | 10.53 |
| CDY09653 | Canola | nucleus | 22.9 | 10.02 |
| CDX71844 | Canola | cytosol, golgi, plasma membrane | 9.35 | 9.9 |
| CDY38126 | Canola | cytosol | 31.78 | 8.25 |
| CDY72308 | Canola | cytosol | 22.43 | 7.35 |
| CDY58090 | Canola | cytosol | 16.36 | 6.7 |
| CDY44531 | Canola | cytosol | 17.29 | 6.64 |
| CDY52036 | Canola | cytosol, plastid | 3.74 | 4.3 |
| CDX84019 | Canola | cytosol | 3.74 | 4.28 |
| CDY45277 | Canola | cytosol, plastid | 2.8 | 3.24 |
Protein Annotations
| Gene3D:1.10.10.790 | MapMan:16.4.1.2.3.1 | GO:A0A078D4G6 | EnsemblPlants:CDX84020 | ProteinID:CDX84020 | ProteinID:CDX84020.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006396 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00139832001 | InterPro:IPR000061 | InterPro:IPR035967 |
| PFAM:PF01805 | PFAM:PF12230 | PFscan:PS50128 | PANTHER:PTHR15316 | InterPro:SF3A1 | SMART:SM00648 |
| SUPFAM:SSF109905 | InterPro:SWAP/Surp_sf | InterPro:Surp | UniParc:UPI0004EDC0EC | SEG:seg | : |
Description
BnaC08g16250D
Coordinates
chrLK031834:-:1754144..1755561
Molecular Weight (calculated)
24331.4 Da
IEP (calculated)
4.520
GRAVY (calculated)
-0.729
Length
214 amino acids
Sequence
(BLAST)
(BLAST)
001: MASNAKNAKF NFLTSSDPYH AFYQHKLAEY RAQNEDGAQA GEAKPDLQAQ FRVPPKPLEP PEPEKYTVRL PEGITGEELE YIKLTAQFVA RNGKSFLTGL
101: QSRENNNPQF FFMKPTHSMF PLFTSLVDAY FDVLKPPEDL KEKLRKKEDE KEQERVQMAM IDWHDFVVVE SIDFADEEDE ELPPPMTLEE LPWSGCSSSS
201: STRCPSSPAT ATTS
101: QSRENNNPQF FFMKPTHSMF PLFTSLVDAY FDVLKPPEDL KEKLRKKEDE KEQERVQMAM IDWHDFVVVE SIDFADEEDE ELPPPMTLEE LPWSGCSSSS
201: STRCPSSPAT ATTS
001: MFSSMQILPL EAPPTDGKLG PLPPSQLTDQ EVEERELQAE QNNSNLAPPA AVATHTRTIG IIHPPPDIRT IVEKTAQFVS KNGLEFEKRI IVSNEKNAKF
101: NFLKSSDPYH AFYQHKLTEY RAQNKDGAQG TDDSDGTTDP QLDTGAADES EAGDTQPDLQ AQFRIPSKPL EAPEPEKYTV RLPEGITGEE LDIIKLTAQF
201: VARNGKSFLT GLSNRENNNP QFHFMKPTHS MFTFFTSLVD AYSEVLMPPK DLKEKLRKSA ADLTTVLERC LHRLEWDRSQ EQQKKKEEDE KELERVQMAM
301: IDWHDFVVVE SIDFADEEDE ELPPPMTLDE VIRRSKASAM EEDEIVEPGK EVEMEMDEEE VKLVAEGMRA ANLEENVKIE NVHDEEAPMR IVKNWKRPED
401: RIPTERDPTK VVISPITGEL IPINEMSEHM RISLIDPKFK EQKDRMFAKI RETTLAQDDE IAKNIVGLAR LRPDIFGTTE EEVSNAVKAE IEKKKDEQPK
501: QVIWDGHTGS IGRTANQALS QNANGEEQGD GVYGDPNSFP GPAALPPPRP GVPIVRPLPP PPNLALNLPR PPPSAQYPGA PRPLGVPMMQ PMHQQHQLTM
601: PGPPGHPQMM MNRPPQMQPG MHVPPPPGSQ FAHHMQIPRP YGQLPPSAMG MMQPPPMPGM APPPPPEEAP PPLPEEPEAK RQKFDESALV PEDQFLAQHP
701: GPATIRVSKP NENDGQFMEI TVQSLSENVG SLKEKIAGEI QIPANKQKLS GKAGFLKDNM SLAHYNVGAG EILTLSLRER GGRKR
101: NFLKSSDPYH AFYQHKLTEY RAQNKDGAQG TDDSDGTTDP QLDTGAADES EAGDTQPDLQ AQFRIPSKPL EAPEPEKYTV RLPEGITGEE LDIIKLTAQF
201: VARNGKSFLT GLSNRENNNP QFHFMKPTHS MFTFFTSLVD AYSEVLMPPK DLKEKLRKSA ADLTTVLERC LHRLEWDRSQ EQQKKKEEDE KELERVQMAM
301: IDWHDFVVVE SIDFADEEDE ELPPPMTLDE VIRRSKASAM EEDEIVEPGK EVEMEMDEEE VKLVAEGMRA ANLEENVKIE NVHDEEAPMR IVKNWKRPED
401: RIPTERDPTK VVISPITGEL IPINEMSEHM RISLIDPKFK EQKDRMFAKI RETTLAQDDE IAKNIVGLAR LRPDIFGTTE EEVSNAVKAE IEKKKDEQPK
501: QVIWDGHTGS IGRTANQALS QNANGEEQGD GVYGDPNSFP GPAALPPPRP GVPIVRPLPP PPNLALNLPR PPPSAQYPGA PRPLGVPMMQ PMHQQHQLTM
601: PGPPGHPQMM MNRPPQMQPG MHVPPPPGSQ FAHHMQIPRP YGQLPPSAMG MMQPPPMPGM APPPPPEEAP PPLPEEPEAK RQKFDESALV PEDQFLAQHP
701: GPATIRVSKP NENDGQFMEI TVQSLSENVG SLKEKIAGEI QIPANKQKLS GKAGFLKDNM SLAHYNVGAG EILTLSLRER GGRKR
Arabidopsis Description
Probable splicing factor 3A subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXF1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.