CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d040343_P003	Maize	cytosol	93.15	92.69
Zm00001d008293_P001	Maize	cytosol	92.9	92.56
Os02t0245000-01	Rice	cytosol	80.07	81.19
TraesCS3B01G212000.1	Wheat	cytosol	58.16	80.8
TraesCS3B01G211900.1	Wheat	cytosol	74.47	77.97
TraesCS3D01G510100.1	Wheat	cytosol	76.84	77.71
TraesCS3A01G503600.1	Wheat	cytosol	76.34	77.5
HORVU3Hr1G110920.1	Barley	cytosol	76.34	74.85
TraesCS3B01G566900.1	Wheat	cytosol	76.21	73.91
GSMUA_Achr3P03970_001	Banana	cytosol	61.27	62.84
GSMUA_Achr9P12650_001	Banana	cytosol	62.39	62.08
Solyc02g081960.2.1	Tomato	cytosol, nucleus	59.4	62.03
KRG90981	Soybean	nucleus	61.52	61.9
Solyc04g005690.2.1	Tomato	cytosol, nucleus	59.03	61.72
KRH35776	Soybean	cytosol	61.52	61.67
KRH12470	Soybean	cytosol, endoplasmic reticulum, nucleus	57.66	61.65
KRH36511	Soybean	cytosol	61.64	61.41
VIT_01s0011g02040.t01	Wine grape	cytosol	61.52	60.69
PGSC0003DMT400007349	Potato	cytosol	60.52	60.52
PGSC0003DMT400018892	Potato	cytosol	59.53	59.6
CDX84020	Canola	nucleus	15.82	59.35
Bra016688.1-P	Field mustard	cytosol	51.06	59.25
CDY41093	Canola	cytosol	56.91	59.2
AT1G14650.1	Thale cress	cytosol	56.66	57.96
Bra026198.1-P	Field mustard	cytosol, plastid	12.58	54.89
CDY52037	Canola	cytosol	19.93	53.69
CDY45277	Canola	cytosol, plastid	12.33	53.51
CDY45276	Canola	cytosol	19.18	53.47
CDY52036	Canola	cytosol, plastid	12.33	53.23
AT1G14640.1	Thale cress	cytosol	47.82	52.24
CDX84019	Canola	cytosol	11.83	50.8
AT5G06890.1	Thale cress	cytosol	3.99	48.48
KXG32223	Sorghum	nucleus, plastid	11.46	48.17
CDY21434	Canola	cytosol	3.61	40.85
Bra000608.1-P	Field mustard	cytosol	3.61	40.85
CDY62788	Canola	cytosol	5.6	38.14
CDX89545	Canola	cytosol	7.72	36.9
CDX89548	Canola	cytosol	7.6	36.31
CDY38929	Canola	cytosol	7.6	36.09
CDY71524	Canola	cytosol	11.58	32.86
Bra032181.1-P	Field mustard	cytosol	8.59	31.94
CDX83169	Canola	plasma membrane	4.11	31.43
AT5G12280.1	Thale cress	cytosol	16.19	31.03
CDY65449	Canola	cytosol	14.69	29.8
CDY21696	Canola	cytosol	11.33	26.69
CDY09657	Canola	cytosol, nucleus, plastid	14.82	26.1
Bra031050.1-P	Field mustard	cytosol	12.2	24.62
AT3G27600.1	Thale cress	cytosol	9.59	24.6
Bra023557.1-P	Field mustard	mitochondrion	7.22	24.37
CDY09653	Canola	nucleus	14.69	24.13
AT3G49130.1	Thale cress	cytosol	9.09	23.78
CDY38128	Canola	cytosol	11.21	22.5
CDY69291	Canola	cytosol, golgi	4.61	22.29
CDX81896	Canola	cytosol	6.23	21.64
CDY58992	Canola	cytosol	6.23	21.55
CDY72308	Canola	cytosol	16.06	19.75
CDX71843	Canola	cytosol	5.35	19.72
AT4G16200.1	Thale cress	nucleus	6.85	19.1
CDY58090	Canola	cytosol	12.2	18.77
Bra007503.1-P	Field mustard	cytosol	12.08	18.55
CDX71844	Canola	cytosol, golgi, plasma membrane	4.48	17.82
CDY44531	Canola	cytosol	12.2	17.59
CDY38126	Canola	cytosol	16.44	16.02
AT5G06520.1	Thale cress	cytosol	13.08	15.46
AT1G18050.1	Thale cress	nucleus	2.86	10.27

Protein Annotations

Gene3D:1.10.10.790	MapMan:16.4.1.2.3.1	Gene3D:3.10.20.90	UniProt:C5XGI9	ncoils:Coil	EnsemblPlants:EES00535
ProteinID:EES00535	ProteinID:EES00535.1	GO:GO:0000381	GO:GO:0000389	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005686	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016043	GO:GO:0071004	GO:GO:0071013	InterPro:IPR000061	InterPro:IPR000626
InterPro:IPR035967	ProteinID:KXG32220.2	PFAM:PF00240	PFAM:PF01805	PFAM:PF12230	PFscan:PS50053
PFscan:PS50128	PANTHER:PTHR15316	PANTHER:PTHR15316:SF1	InterPro:SF3A1	SMART:SM00213	SMART:SM00648
EnsemblPlantsGene:SORBI_3003G123000	SUPFAM:SSF109905	SUPFAM:SSF54236	InterPro:SWAP/Surp_sf	unigene:Sbi.11965	InterPro:Surp
UniParc:UPI0001A84A56	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	RefSeq:XP_002455415.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:+:11177638..11181065

Molecular Weight (calculated)

87582.6 Da

IEP (calculated)

4.803

GRAVY (calculated)

-0.535

Length

803 amino acids

Sequence
(BLAST)

001: MAAAMGTTIL TLPAPEGNGT GGGGGDDLQL QVASPKPPPP GAKADPPATV ATHTRTIGII HPPPDIRVII EKTATFVAKN GPEFERRIIS HNQGNAKFNF
101: LQPSDPYHAY YQHRVSEIGA APPGADGLLG AETDGDPAEA PASASADGGA AVAPADGAAA DAKADHSAPF RVAPPPKVLV PPKAELYTVR LPEGITGEEL
201: DIIKLTAQFV ARNGKNFLTS LAQRESNNMQ FHFIRPTHSM FPFFTALTDA YSRVLRPAEG VPALLKELRE GAKDLTTVLE RCLNRLEWDR SQEQARQQAE
301: DEVEQERMQM SMIDWHDFVV VETIEFADDE YEGLPVPLTL EELKRQKRME NLGEEEAMDL AEPAKEVEME MDEEEMQLVE EGMRAAQLEE NDGGAQVNVA
401: GDDDAPMRIV KNYKRPEERI PAERDPTKFV VSPITGELIP ISEMEEHMRI SLIDPKYKEQ KERMLAKIKE TTLAPDDEIS RNIVGLARTR PDIFGTTEEE
501: VSNAVKAEIE KKKDEQPKQV IWDGHSGSIG RTATHALSQP QGGEEQFDAS NVPGPAPLVR PGMPLPRPPQ PLPLVNVPRF IAPPAPYSLQ PPGPHMPGVP
601: QMMPHMHLPP QQIPGQPPMV RMPGQMVHMP TNIPPPPGQT QFMPGPPRTF AMPPSSHMPP MVNPIGIPQP PAPPLPPQPP AEEQPPPPDE PEPKRPRTDD
701: ASLIPVEQFL AQHPGPASIS VSVPNLDEGN LRGQVLQIPV QSLSDTVGSL KEQIAGELQL PANKQKLSVR TSFLKDNLTL AYYNVGPGVV INLTLRERGG
801: RKK

Best Arabidopsis Sequence Match ( AT1G14650.1 )
(BLAST)

001: MFSSMQILPL EAPPTDGKLG PLPPSQLTDQ EVEERELQAE QNNSNLAPPA AVATHTRTIG IIHPPPDIRT IVEKTAQFVS KNGLEFEKRI IVSNEKNAKF
101: NFLKSSDPYH AFYQHKLTEY RAQNKDGAQG TDDSDGTTDP QLDTGAADES EAGDTQPDLQ AQFRIPSKPL EAPEPEKYTV RLPEGITGEE LDIIKLTAQF
201: VARNGKSFLT GLSNRENNNP QFHFMKPTHS MFTFFTSLVD AYSEVLMPPK DLKEKLRKSA ADLTTVLERC LHRLEWDRSQ EQQKKKEEDE KELERVQMAM
301: IDWHDFVVVE SIDFADEEDE ELPPPMTLDE VIRRSKASAM EEDEIVEPGK EVEMEMDEEE VKLVAEGMRA ANLEENVKIE NVHDEEAPMR IVKNWKRPED
401: RIPTERDPTK VVISPITGEL IPINEMSEHM RISLIDPKFK EQKDRMFAKI RETTLAQDDE IAKNIVGLAR LRPDIFGTTE EEVSNAVKAE IEKKKDEQPK
501: QVIWDGHTGS IGRTANQALS QNANGEEQGD GVYGDPNSFP GPAALPPPRP GVPIVRPLPP PPNLALNLPR PPPSAQYPGA PRPLGVPMMQ PMHQQHQLTM
601: PGPPGHPQMM MNRPPQMQPG MHVPPPPGSQ FAHHMQIPRP YGQLPPSAMG MMQPPPMPGM APPPPPEEAP PPLPEEPEAK RQKFDESALV PEDQFLAQHP
701: GPATIRVSKP NENDGQFMEI TVQSLSENVG SLKEKIAGEI QIPANKQKLS GKAGFLKDNM SLAHYNVGAG EILTLSLRER GGRKR

Arabidopsis Description

Probable splicing factor 3A subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXF1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.