Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY58992 | Canola | cytosol | 100.0 | 99.57 |
| CDX84020 | Canola | nucleus | 18.61 | 20.09 |
| CDY21434 | Canola | cytosol | 6.06 | 19.72 |
| CDY21696 | Canola | cytosol | 29.0 | 19.65 |
| CDY71524 | Canola | cytosol | 23.38 | 19.08 |
| CDX89548 | Canola | cytosol | 13.85 | 19.05 |
| CDX89545 | Canola | cytosol | 12.99 | 17.86 |
| CDY38929 | Canola | cytosol | 12.55 | 17.16 |
| CDX71843 | Canola | cytosol | 15.58 | 16.51 |
| CDY69291 | Canola | cytosol, golgi | 11.69 | 16.27 |
| CDY52037 | Canola | cytosol | 20.35 | 15.77 |
| CDY45276 | Canola | cytosol | 19.05 | 15.28 |
| CDX71844 | Canola | cytosol, golgi, plasma membrane | 12.12 | 13.86 |
| CDX83169 | Canola | plasma membrane | 6.06 | 13.33 |
| CDY65449 | Canola | cytosol | 21.21 | 12.37 |
| CDY38128 | Canola | cytosol | 18.61 | 10.75 |
| CDY62788 | Canola | cytosol | 5.19 | 10.17 |
| CDY44531 | Canola | cytosol | 21.64 | 8.98 |
| CDY58090 | Canola | cytosol | 19.48 | 8.62 |
| Solyc04g005690.2.1 | Tomato | cytosol, nucleus | 25.54 | 7.68 |
| KRG90981 | Soybean | nucleus | 25.54 | 7.39 |
| CDY41093 | Canola | cytosol | 24.24 | 7.25 |
| VIT_01s0011g02040.t01 | Wine grape | cytosol | 25.54 | 7.25 |
| KRH35776 | Soybean | cytosol | 25.11 | 7.24 |
| CDY09657 | Canola | cytosol, nucleus, plastid | 14.29 | 7.24 |
| PGSC0003DMT400007349 | Potato | cytosol | 25.11 | 7.22 |
| CDY72308 | Canola | cytosol | 20.35 | 7.2 |
| Solyc02g081960.2.1 | Tomato | cytosol, nucleus | 23.81 | 7.15 |
| KRH36511 | Soybean | cytosol | 24.24 | 6.95 |
| KXG32223 | Sorghum | nucleus, plastid | 5.63 | 6.81 |
| PGSC0003DMT400018892 | Potato | cytosol | 23.38 | 6.73 |
| GSMUA_Achr3P03970_001 | Banana | cytosol | 22.51 | 6.64 |
| CDY09653 | Canola | nucleus | 13.85 | 6.54 |
| KRH12470 | Soybean | cytosol, endoplasmic reticulum, nucleus | 21.21 | 6.52 |
| GSMUA_Achr9P12650_001 | Banana | cytosol | 22.08 | 6.32 |
| HORVU3Hr1G110920.1 | Barley | cytosol | 22.08 | 6.23 |
| EES00535 | Sorghum | cytosol | 21.64 | 6.23 |
| Zm00001d008293_P001 | Maize | cytosol | 21.21 | 6.08 |
| Zm00001d040343_P003 | Maize | cytosol | 21.21 | 6.07 |
| Os02t0245000-01 | Rice | cytosol | 20.78 | 6.06 |
| TraesCS3B01G211900.1 | Wheat | cytosol | 19.91 | 6.0 |
| TraesCS3A01G503600.1 | Wheat | cytosol | 20.35 | 5.94 |
| TraesCS3D01G510100.1 | Wheat | cytosol | 19.91 | 5.79 |
| TraesCS3B01G212000.1 | Wheat | cytosol | 14.29 | 5.71 |
| CDY38126 | Canola | cytosol | 19.91 | 5.58 |
| TraesCS3B01G566900.1 | Wheat | cytosol | 19.91 | 5.56 |
| CDY52036 | Canola | cytosol, plastid | 3.46 | 4.3 |
| CDX84019 | Canola | cytosol | 3.03 | 3.74 |
| CDY45277 | Canola | cytosol, plastid | 2.6 | 3.24 |
Protein Annotations
| Gene3D:1.10.10.790 | MapMan:35.2 | GO:A0A078CXI3 | EnsemblPlants:CDX81896 | ProteinID:CDX81896 | ProteinID:CDX81896.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006396 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00136854001 | InterPro:IPR000061 | InterPro:IPR035967 |
| PFAM:PF01805 | PFscan:PS50128 | SUPFAM:SSF109905 | InterPro:SWAP/Surp_sf | InterPro:Surp | UniParc:UPI0004EE1018 |
Description
BnaC08g37050D
Coordinates
chrLK031826:+:1366003..1367996
Molecular Weight (calculated)
26204.7 Da
IEP (calculated)
7.880
GRAVY (calculated)
-0.089
Length
231 amino acids
Sequence
(BLAST)
(BLAST)
001: MALEPYKKSC LHRTNPKETV LEGFFYLVQG EKHSEEVGVQ LATIDLHAFV SGLDFIASRE VGQLLPPGVL STQMRSGALP PKVHHPSPEE HQYYPFTYPQ
101: GITPKQLGII KLTALFLVRY GWGFWVGLHT RLILKPHLPF GFLYSPDRSY HLLFNWLTNV YVGVMPAPGR LRLSPAAREI ILDGFFYLLE DGSDIATSDL
201: HAFVGGIDYF AKRENYEKSA LLPQHPSYTF R
101: GITPKQLGII KLTALFLVRY GWGFWVGLHT RLILKPHLPF GFLYSPDRSY HLLFNWLTNV YVGVMPAPGR LRLSPAAREI ILDGFFYLLE DGSDIATSDL
201: HAFVGGIDYF AKRENYEKSA LLPQHPSYTF R
001: MVDLFDFVGG GNYSAAMPPP ERLSVMIMNR VAQTQPDMVL QLPLGSQLTI PAKGITLKEL GVMKLTAQSS VRYGFDFWCG LWKRVYMNPL FQFLNPSDSR
101: SDFYNGFTAA YSRVLKPSKK LKKFDACTAT VLEGFFHRLH LFKLEEGVET AMIDLHGFVY GVDCFAHMAD DNYSAIMDPP ERPSMMINQL TQIQRNAPAP
201: HEKCLKRSYN FPYAFGGGIS LKELDLMKKV VMKPQFKFME PTNSVFGLYN VVVDAYSRVV KPSDDAYASM GMMQTARPEE PEAKRQKFDE SALNPEGAVR
301: RRHSRWQ
101: SDFYNGFTAA YSRVLKPSKK LKKFDACTAT VLEGFFHRLH LFKLEEGVET AMIDLHGFVY GVDCFAHMAD DNYSAIMDPP ERPSMMINQL TQIQRNAPAP
201: HEKCLKRSYN FPYAFGGGIS LKELDLMKKV VMKPQFKFME PTNSVFGLYN VVVDAYSRVV KPSDDAYASM GMMQTARPEE PEAKRQKFDE SALNPEGAVR
301: RRHSRWQ
Arabidopsis Description
SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9SMU9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.