Factsheet for TraesCS3D01G510100.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G503600.1	Wheat	cytosol	93.95	94.31
TraesCS3B01G566900.1	Wheat	cytosol	92.7	88.89
HORVU3Hr1G110920.1	Barley	cytosol	89.8	87.06
Os02t0245000-01	Rice	cytosol	77.58	77.78
EES00535	Sorghum	cytosol	77.71	76.84
Zm00001d040343_P003	Maize	cytosol	77.33	76.08
Zm00001d008293_P001	Maize	cytosol	77.2	76.05
GSMUA_Achr3P03970_001	Banana	cytosol	60.83	61.69
GSMUA_Achr9P12650_001	Banana	cytosol	62.59	61.59
Solyc04g005690.2.1	Tomato	cytosol, nucleus	58.94	60.94
Solyc02g081960.2.1	Tomato	cytosol, nucleus	58.94	60.86
KRH12470	Soybean	cytosol, endoplasmic reticulum, nucleus	56.93	60.19
KRG90981	Soybean	nucleus	60.2	59.9
KRH36511	Soybean	cytosol	60.45	59.55
KRH35776	Soybean	cytosol	59.95	59.43
PGSC0003DMT400007349	Potato	cytosol	59.7	59.03
VIT_01s0011g02040.t01	Wine grape	cytosol	60.33	58.85
PGSC0003DMT400018892	Potato	cytosol	59.19	58.6
Bra016688.1-P	Field mustard	cytosol	50.63	58.09
CDY41093	Canola	cytosol	56.42	58.03
Bra026198.1-P	Field mustard	cytosol, plastid	13.35	57.61
CDY52036	Canola	cytosol, plastid	13.22	56.45
CDY45277	Canola	cytosol, plastid	13.1	56.22
AT1G14650.1	Thale cress	cytosol	55.04	55.67
CDX84020	Canola	nucleus	14.74	54.67
CDX84019	Canola	cytosol	12.72	54.01
AT5G06890.1	Thale cress	cytosol	4.28	51.52
AT1G14640.1	Thale cress	cytosol	46.6	50.34
CDY52037	Canola	cytosol	18.64	49.66
CDY45276	Canola	cytosol	17.63	48.61
KXG32223	Sorghum	nucleus, plastid	10.45	43.46
CDY21434	Canola	cytosol	3.53	39.44
Bra000608.1-P	Field mustard	cytosol	3.53	39.44
CDX89548	Canola	cytosol	8.06	38.1
CDY62788	Canola	cytosol	5.54	37.29
CDX89545	Canola	cytosol	7.81	36.9
CDY38929	Canola	cytosol	7.81	36.69
CDY71524	Canola	cytosol	11.46	32.16
Bra032181.1-P	Field mustard	cytosol	8.69	31.94
CDX83169	Canola	plasma membrane	4.16	31.43
CDY65449	Canola	cytosol	14.99	30.05
AT5G12280.1	Thale cress	cytosol	15.37	29.12
CDY21696	Canola	cytosol	11.34	26.39
CDY09657	Canola	cytosol, nucleus, plastid	14.86	25.88
Bra023557.1-P	Field mustard	mitochondrion	7.3	24.37
CDY09653	Canola	nucleus	14.86	24.13
Bra031050.1-P	Field mustard	cytosol	12.09	24.12
AT3G27600.1	Thale cress	cytosol	9.45	23.96
AT3G49130.1	Thale cress	cytosol	9.19	23.78
CDY38128	Canola	cytosol	10.71	21.25
CDY69291	Canola	cytosol, golgi	4.28	20.48
CDX81896	Canola	cytosol	5.79	19.91
CDY58992	Canola	cytosol	5.79	19.83
CDY72308	Canola	cytosol	15.74	19.14
AT4G16200.1	Thale cress	nucleus	6.93	19.1
CDX71843	Canola	cytosol	5.04	18.35
CDY58090	Canola	cytosol	11.34	17.24
Bra007503.1-P	Field mustard	cytosol	11.21	17.02
CDY44531	Canola	cytosol	11.46	16.34
CDY38126	Canola	cytosol	16.12	15.53
AT5G06520.1	Thale cress	cytosol	12.85	15.02
CDX71844	Canola	cytosol, golgi, plasma membrane	3.53	13.86
AT1G18050.1	Thale cress	nucleus	2.9	10.27

Protein Annotations

Gene3D:1.10.10.790	MapMan:16.4.1.2.3.1	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	InterPro:IPR000061	InterPro:IPR000626	InterPro:IPR035967	PFAM:PF00240	PFAM:PF01805
PFAM:PF12230	PFscan:PS50053	PFscan:PS50128	PANTHER:PTHR15316	PANTHER:PTHR15316:SF1	InterPro:SF3A1
SMART:SM00213	SMART:SM00648	SUPFAM:SSF109905	SUPFAM:SSF54236	InterPro:SWAP/Surp_sf	InterPro:Surp
EnsemblPlantsGene:TraesCS3D01G510100	EnsemblPlants:TraesCS3D01G510100.1	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	SEG:seg	:

Description

No Description!

Coordinates

chr3D:-:595109906..595112384

Molecular Weight (calculated)

87457.3 Da

IEP (calculated)

4.850

GRAVY (calculated)

-0.590

Length

794 amino acids

Sequence
(BLAST)

001: MGSPTVAPAP LLPAAVPDGG EADANGEHER LQQLQIVPSS APAAAAPSKP PEPAPTVATH TRTIGIIHPP PDIRVIIEKT ATFVAKNGPE FERRIVAHNQ
101: GNAKFNFLQP SDPYHAYYQH RVSEIADAPP APDAAAAADP DALPSDDSAA DGAPADHSAP FRVGPPAKVL VPPKAELYTV RLPEGITTEE VDIVKLTAQF
201: VARNGKTFLA SLASRESTNP QFNFLRPTHS MFPFFTALAD IYSRVMRPDE GVATLMRELK EGTKDLTTVL ERCLNRLEWD RSQEQAKQQA EDEVEMERMQ
301: MSMIDWHDFV VVETIEFDDD EFEGLPVPPT LEELKRRKRM ETLGEEEPME LAEPAKDVEM EMDEEEMQLV EEGMKAARLD ENDGGAQVKV ASNDDEPPMR
401: IVKNYKRPEE RIPAERDPTK VVVSPITGEL IPISEMEEHM RISLIDPKYK EQKERMLAKI KETTLAPDDE ISRNIIGLAR TRPDIFGTTE EEVSNAVKAE
501: IEKKKDEQPK QVIWDGHSGS IGWTATQAMS VGGEEQGDAS NAPGPAPLPR PGMLLPRPPQ PLSLVNVPRF TPNPMPYHVQ PPHHMQVVPP HMMSNMHQPL
601: PPGQQHMIRM SGPMGHMPSN IPPPPPGHNT QFMPGPPRFA MPPPPHMQNM PTMVNPIGIP QPPPPLPPQP PAEEQPPLPE EPEPKRQRTD DASLIPAEQF
701: LAQHPGPARI SVSVPNLDEG NLRGQVLEIS VQSLSDTVGS LKEQIAGELQ LPANKQKLSV RTSFLKDNLS LAYYNVGPGV AINLALRERG GRKK

Best Arabidopsis Sequence Match ( AT1G14650.1 )
(BLAST)

001: MFSSMQILPL EAPPTDGKLG PLPPSQLTDQ EVEERELQAE QNNSNLAPPA AVATHTRTIG IIHPPPDIRT IVEKTAQFVS KNGLEFEKRI IVSNEKNAKF
101: NFLKSSDPYH AFYQHKLTEY RAQNKDGAQG TDDSDGTTDP QLDTGAADES EAGDTQPDLQ AQFRIPSKPL EAPEPEKYTV RLPEGITGEE LDIIKLTAQF
201: VARNGKSFLT GLSNRENNNP QFHFMKPTHS MFTFFTSLVD AYSEVLMPPK DLKEKLRKSA ADLTTVLERC LHRLEWDRSQ EQQKKKEEDE KELERVQMAM
301: IDWHDFVVVE SIDFADEEDE ELPPPMTLDE VIRRSKASAM EEDEIVEPGK EVEMEMDEEE VKLVAEGMRA ANLEENVKIE NVHDEEAPMR IVKNWKRPED
401: RIPTERDPTK VVISPITGEL IPINEMSEHM RISLIDPKFK EQKDRMFAKI RETTLAQDDE IAKNIVGLAR LRPDIFGTTE EEVSNAVKAE IEKKKDEQPK
501: QVIWDGHTGS IGRTANQALS QNANGEEQGD GVYGDPNSFP GPAALPPPRP GVPIVRPLPP PPNLALNLPR PPPSAQYPGA PRPLGVPMMQ PMHQQHQLTM
601: PGPPGHPQMM MNRPPQMQPG MHVPPPPGSQ FAHHMQIPRP YGQLPPSAMG MMQPPPMPGM APPPPPEEAP PPLPEEPEAK RQKFDESALV PEDQFLAQHP
701: GPATIRVSKP NENDGQFMEI TVQSLSENVG SLKEKIAGEI QIPANKQKLS GKAGFLKDNM SLAHYNVGAG EILTLSLRER GGRKR

Arabidopsis Description

Probable splicing factor 3A subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXF1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.