Factsheet for Bra007503.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY58090	Canola	cytosol	98.09	98.28
Bra026198.1-P	Field mustard	cytosol, plastid	8.8	25.0
Bra000608.1-P	Field mustard	cytosol	3.25	23.94
Bra032181.1-P	Field mustard	cytosol	7.07	17.13
Bra023557.1-P	Field mustard	mitochondrion	7.27	15.97
Bra031050.1-P	Field mustard	cytosol	10.9	14.32
Bra016688.1-P	Field mustard	cytosol	18.55	14.02
KRH12470	Soybean	cytosol, endoplasmic reticulum, nucleus	20.08	13.98
TraesCS3B01G212000.1	Wheat	cytosol	15.3	13.84
KRH35776	Soybean	cytosol	19.89	12.98
PGSC0003DMT400007349	Potato	cytosol	19.89	12.95
KRH36511	Soybean	cytosol	19.89	12.9
Solyc04g005690.2.1	Tomato	cytosol, nucleus	18.93	12.89
KRG90981	Soybean	nucleus	19.5	12.78
Solyc02g081960.2.1	Tomato	cytosol, nucleus	18.74	12.74
VIT_01s0011g02040.t01	Wine grape	cytosol	19.69	12.65
PGSC0003DMT400018892	Potato	cytosol	19.31	12.59
GSMUA_Achr3P03970_001	Banana	cytosol	18.74	12.52
TraesCS3B01G211900.1	Wheat	cytosol	17.97	12.26
GSMUA_Achr9P12650_001	Banana	cytosol	18.74	12.14
EES00535	Sorghum	cytosol	18.55	12.08
Zm00001d040343_P003	Maize	cytosol	18.16	11.77
Zm00001d008293_P001	Maize	cytosol	17.97	11.66
TraesCS3A01G503600.1	Wheat	cytosol	17.02	11.25
TraesCS3D01G510100.1	Wheat	cytosol	17.02	11.21
Os02t0245000-01	Rice	cytosol	16.83	11.11
HORVU3Hr1G110920.1	Barley	cytosol	17.4	11.11
TraesCS3B01G566900.1	Wheat	cytosol	17.21	10.87
KXG32223	Sorghum	nucleus, plastid	2.68	7.33

Protein Annotations

Gene3D:1.10.10.790	Gene3D:3.10.20.90	MapMan:35.2	EnsemblPlantsGene:Bra007503	EnsemblPlants:Bra007503.1	EnsemblPlants:Bra007503.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0006139	GO:GO:0006396
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR000061	InterPro:IPR035967	UniProt:M4CTG0
PFAM:PF01805	PFscan:PS50128	PANTHER:PTHR15316	PANTHER:PTHR15316:SF1	SMART:SM00648	SUPFAM:SSF109905
SUPFAM:SSF54236	InterPro:SWAP/Surp_sf	InterPro:Surp	UniParc:UPI0002542FAF	InterPro:Ubiquitin-like_domsf	SEG:seg

Description

AT3G49130 (E=6e-014) | RNA binding

Coordinates

chrA09:+:29519515..29521331

Molecular Weight (calculated)

60137.6 Da

IEP (calculated)

7.067

GRAVY (calculated)

-0.163

Length

523 amino acids

Sequence
(BLAST)

001: MTQFGGYDYC TEKAMQYLTL EPGKVPEALK LYAEAFQANA SGSSDSFLEL PTDLNSIRRI REDKRFVEID RTRSTEDKSV MMKDPFGITF LLRMEKKKMT
101: QYVVDHGLLF RRACNPIAFG FPQGISPNDL CTIKLTAVFV TRYGMAFKKA LNKIASTEFA FLNLNHIWRR LFFNFVGVYT SIVKPSKEVY RSCDFMGKAL
201: ELFFHLLQLK NVKMGGSRRV MEVDAFTGGV DYFAYMDFVG YSDVMPRPQR RSVMIAQLGH TLRTPLSASW CTTIFFVSPE VLGIIKLTAL FVARYGKRIA
301: CELMEKEGRN PLFSFLDPSD CGFPCYNMVV KVYSKVLKNF ELVYTADIVL QRYFQSLWDE EKEDEPKDVD DLYSFVECVD SFAQMEDEEF FHKMGTREAH
401: VYPFHDQTSR VHSRPHVYHP FHDQTSPANV QEEEGPSSIE VCVPTLDGRV IIEIVVESFF GEKVASLKEK IVKVIQIPSK YLKLRGKLVG VLRDDKSLAD
501: NNVEAGEILI ATWRFSRWEV QIT

Best Arabidopsis Sequence Match ( AT3G49130.1 )
(BLAST)

001: MVDLFDFVGG GNYSAAMPPP ERLSVMIMNR VAQTQPDMVL QLPLGSQLTI PAKGITLKEL GVMKLTAQSS VRYGFDFWCG LWKRVYMNPL FQFLNPSDSR
101: SDFYNGFTAA YSRVLKPSKK LKKFDACTAT VLEGFFHRLH LFKLEEGVET AMIDLHGFVY GVDCFAHMAD DNYSAIMDPP ERPSMMINQL TQIQRNAPAP
201: HEKCLKRSYN FPYAFGGGIS LKELDLMKKV VMKPQFKFME PTNSVFGLYN VVVDAYSRVV KPSDDAYASM GMMQTARPEE PEAKRQKFDE SALNPEGAVR
301: RRHSRWQ

Arabidopsis Description

SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9SMU9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.