Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- endoplasmic reticulum 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G510100.1 | Wheat | cytosol | 87.06 | 89.8 |
| TraesCS3A01G503600.1 | Wheat | cytosol | 86.2 | 89.25 |
| TraesCS3B01G566900.1 | Wheat | cytosol | 86.08 | 85.14 |
| Os02t0245000-01 | Rice | cytosol | 74.6 | 77.15 |
| EES00535 | Sorghum | cytosol | 74.85 | 76.34 |
| Zm00001d008293_P001 | Maize | cytosol | 74.6 | 75.81 |
| Zm00001d040343_P003 | Maize | cytosol | 74.6 | 75.71 |
| GSMUA_Achr3P03970_001 | Banana | cytosol | 58.36 | 61.05 |
| Solyc04g005690.2.1 | Tomato | cytosol, nucleus | 56.9 | 60.68 |
| GSMUA_Achr9P12650_001 | Banana | cytosol | 59.71 | 60.59 |
| Solyc02g081960.2.1 | Tomato | cytosol, nucleus | 56.65 | 60.34 |
| KRH12470 | Soybean | cytosol, endoplasmic reticulum, nucleus | 55.07 | 60.05 |
| KRG90981 | Soybean | nucleus | 58.12 | 59.65 |
| KRH36511 | Soybean | cytosol | 58.36 | 59.31 |
| KRH35776 | Soybean | cytosol | 57.88 | 59.18 |
| PGSC0003DMT400007349 | Potato | cytosol | 57.75 | 58.9 |
| VIT_01s0011g02040.t01 | Wine grape | cytosol | 58.0 | 58.35 |
| PGSC0003DMT400018892 | Potato | cytosol | 57.02 | 58.23 |
| Bra016688.1-P | Field mustard | cytosol | 48.96 | 57.95 |
| CDY41093 | Canola | cytosol | 54.33 | 57.64 |
| Bra026198.1-P | Field mustard | cytosol, plastid | 12.7 | 56.52 |
| CDY52036 | Canola | cytosol, plastid | 12.58 | 55.38 |
| AT1G14650.1 | Thale cress | cytosol | 52.99 | 55.29 |
| CDY45277 | Canola | cytosol, plastid | 12.45 | 55.14 |
| CDX84020 | Canola | nucleus | 14.29 | 54.67 |
| CDX84019 | Canola | cytosol | 12.09 | 52.94 |
| AT5G06890.1 | Thale cress | cytosol | 4.15 | 51.52 |
| AT1G14640.1 | Thale cress | cytosol | 45.05 | 50.2 |
| CDY52037 | Canola | cytosol | 17.95 | 49.33 |
| CDY45276 | Canola | cytosol | 16.73 | 47.57 |
| KXG32223 | Sorghum | nucleus, plastid | 10.13 | 43.46 |
| CDY21434 | Canola | cytosol | 3.42 | 39.44 |
| Bra000608.1-P | Field mustard | cytosol | 3.42 | 39.44 |
| CDX89548 | Canola | cytosol | 7.81 | 38.1 |
| CDX89545 | Canola | cytosol | 7.69 | 37.5 |
| CDY62788 | Canola | cytosol | 5.37 | 37.29 |
| CDY38929 | Canola | cytosol | 7.69 | 37.28 |
| Bra032181.1-P | Field mustard | cytosol | 8.55 | 32.41 |
| CDX83169 | Canola | plasma membrane | 4.03 | 31.43 |
| CDY71524 | Canola | cytosol | 10.62 | 30.74 |
| CDY65449 | Canola | cytosol | 14.65 | 30.3 |
| AT5G12280.1 | Thale cress | cytosol | 15.02 | 29.36 |
| CDY21696 | Canola | cytosol | 10.99 | 26.39 |
| CDY09657 | Canola | cytosol, nucleus, plastid | 13.68 | 24.56 |
| Bra031050.1-P | Field mustard | cytosol | 11.72 | 24.12 |
| AT3G27600.1 | Thale cress | cytosol | 9.04 | 23.64 |
| Bra023557.1-P | Field mustard | mitochondrion | 6.84 | 23.53 |
| AT3G49130.1 | Thale cress | cytosol | 8.67 | 23.13 |
| CDY09653 | Canola | nucleus | 13.68 | 22.9 |
| CDX81896 | Canola | cytosol | 6.23 | 22.08 |
| CDY58992 | Canola | cytosol | 6.23 | 21.98 |
| CDY38128 | Canola | cytosol | 10.38 | 21.25 |
| CDY69291 | Canola | cytosol, golgi | 4.15 | 20.48 |
| CDY72308 | Canola | cytosol | 15.14 | 18.99 |
| AT4G16200.1 | Thale cress | nucleus | 6.59 | 18.75 |
| CDX71843 | Canola | cytosol | 4.88 | 18.35 |
| CDY58090 | Canola | cytosol | 11.23 | 17.62 |
| Bra007503.1-P | Field mustard | cytosol | 11.11 | 17.4 |
| CDY44531 | Canola | cytosol | 11.23 | 16.52 |
| CDY38126 | Canola | cytosol | 15.87 | 15.78 |
| AT5G06520.1 | Thale cress | cytosol | 12.33 | 14.87 |
| CDX71844 | Canola | cytosol, golgi, plasma membrane | 3.66 | 14.85 |
| AT1G18050.1 | Thale cress | nucleus | 2.93 | 10.71 |
Protein Annotations
| Gene3D:1.10.10.790 | MapMan:16.4.1.2.3.1 | UniProt:A0A287MPK9 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:HORVU3Hr1G110920 | EnsemblPlants:HORVU3Hr1G110920.1 |
| InterPro:IPR000061 | InterPro:IPR000626 | InterPro:IPR035967 | PFAM:PF00240 | PFAM:PF01805 | PFAM:PF12230 |
| PFscan:PS50053 | PFscan:PS50128 | PANTHER:PTHR15316 | PANTHER:PTHR15316:SF1 | InterPro:SF3A1 | SMART:SM00213 |
| SMART:SM00648 | SUPFAM:SSF109905 | SUPFAM:SSF54236 | InterPro:SWAP/Surp_sf | InterPro:Surp | TMHMM:TMhelix |
| UniParc:UPI000B467EA1 | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_dom | SEG:seg | : | : |
Description
No Description!
Coordinates
chrchr3H:+:682226336..682231436
Molecular Weight (calculated)
90449.3 Da
IEP (calculated)
4.944
GRAVY (calculated)
-0.504
Length
819 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSPTVAPPL LPAEGDANGD HERQQQLQIV PSSAAPSAAA PSKPPEPAPT VATHTRTIGI IHPPPDIRVI IEKTASFVAK NGPEFERRIV ALNQGNAKFN
101: FLQPSDPYHA YYQHRVSEIA DAPPASSDAA DPDALPSDDS AATADGAPAA DHSAPFRVAP PAKVLVPPKA ELYTVHLPEG ITTEEVDIVK LTAQFVARNG
201: KAFLSSLAAR ESTNPQFNFL RPTHSMFPLF TALADIYSRV MRPDEGVSAL MRELKEGSKD LTTVLERCLN RLEWDRTQEQ AKQQAEDEVE MERMQMSMID
301: WHDFVVVETI EFADDEFEGL PVPPTLEELK RRKRMETLGE EEPMELAEPA KDVEMEMDEE EMQLVEEGMK AARLDENDGG AQVKVAGNDE EPPMRIVKNY
401: KRPEERIPAE RDPTKVVVSP ITGELIPISE MEEHMRISLI DPKYKEQKER MLAKIKETTL APDDEISRNI IGLARTRPDI FGTTEEEVSN AVKAEIEKKK
501: DEQPKQVIWD GHSGSIGWTA TQAMSIGGEE QGDASNAPGP APLPRPGMPL PRPPQPLSLV NVPRFTPNPM PYHVQPPHHM QGVPPHMMSN MHPPLPPGQQ
601: HMIRMSGPMG HMPNSIPPPP PGHNTQFIPG PPRFPMPPPP HMQNMPTMVN PIGIPQPPPP LPPQPPAEEQ PPLPEEPEPK RQRTDDASLI PAEQFLAQHP
701: VMSLFIYFHS NHLLLLLFCA VMLIYLFLLQ GPARISVSVP NLDEGNLRGQ VLEISVQSLS DTIGSLKEQV AGELQLPANK QKLSVRTSFL KDNLSLAYYN
801: VGPGVVINLA LRERGGRKK
101: FLQPSDPYHA YYQHRVSEIA DAPPASSDAA DPDALPSDDS AATADGAPAA DHSAPFRVAP PAKVLVPPKA ELYTVHLPEG ITTEEVDIVK LTAQFVARNG
201: KAFLSSLAAR ESTNPQFNFL RPTHSMFPLF TALADIYSRV MRPDEGVSAL MRELKEGSKD LTTVLERCLN RLEWDRTQEQ AKQQAEDEVE MERMQMSMID
301: WHDFVVVETI EFADDEFEGL PVPPTLEELK RRKRMETLGE EEPMELAEPA KDVEMEMDEE EMQLVEEGMK AARLDENDGG AQVKVAGNDE EPPMRIVKNY
401: KRPEERIPAE RDPTKVVVSP ITGELIPISE MEEHMRISLI DPKYKEQKER MLAKIKETTL APDDEISRNI IGLARTRPDI FGTTEEEVSN AVKAEIEKKK
501: DEQPKQVIWD GHSGSIGWTA TQAMSIGGEE QGDASNAPGP APLPRPGMPL PRPPQPLSLV NVPRFTPNPM PYHVQPPHHM QGVPPHMMSN MHPPLPPGQQ
601: HMIRMSGPMG HMPNSIPPPP PGHNTQFIPG PPRFPMPPPP HMQNMPTMVN PIGIPQPPPP LPPQPPAEEQ PPLPEEPEPK RQRTDDASLI PAEQFLAQHP
701: VMSLFIYFHS NHLLLLLFCA VMLIYLFLLQ GPARISVSVP NLDEGNLRGQ VLEISVQSLS DTIGSLKEQV AGELQLPANK QKLSVRTSFL KDNLSLAYYN
801: VGPGVVINLA LRERGGRKK
001: MFSSMQILPL EAPPTDGKLG PLPPSQLTDQ EVEERELQAE QNNSNLAPPA AVATHTRTIG IIHPPPDIRT IVEKTAQFVS KNGLEFEKRI IVSNEKNAKF
101: NFLKSSDPYH AFYQHKLTEY RAQNKDGAQG TDDSDGTTDP QLDTGAADES EAGDTQPDLQ AQFRIPSKPL EAPEPEKYTV RLPEGITGEE LDIIKLTAQF
201: VARNGKSFLT GLSNRENNNP QFHFMKPTHS MFTFFTSLVD AYSEVLMPPK DLKEKLRKSA ADLTTVLERC LHRLEWDRSQ EQQKKKEEDE KELERVQMAM
301: IDWHDFVVVE SIDFADEEDE ELPPPMTLDE VIRRSKASAM EEDEIVEPGK EVEMEMDEEE VKLVAEGMRA ANLEENVKIE NVHDEEAPMR IVKNWKRPED
401: RIPTERDPTK VVISPITGEL IPINEMSEHM RISLIDPKFK EQKDRMFAKI RETTLAQDDE IAKNIVGLAR LRPDIFGTTE EEVSNAVKAE IEKKKDEQPK
501: QVIWDGHTGS IGRTANQALS QNANGEEQGD GVYGDPNSFP GPAALPPPRP GVPIVRPLPP PPNLALNLPR PPPSAQYPGA PRPLGVPMMQ PMHQQHQLTM
601: PGPPGHPQMM MNRPPQMQPG MHVPPPPGSQ FAHHMQIPRP YGQLPPSAMG MMQPPPMPGM APPPPPEEAP PPLPEEPEAK RQKFDESALV PEDQFLAQHP
701: GPATIRVSKP NENDGQFMEI TVQSLSENVG SLKEKIAGEI QIPANKQKLS GKAGFLKDNM SLAHYNVGAG EILTLSLRER GGRKR
101: NFLKSSDPYH AFYQHKLTEY RAQNKDGAQG TDDSDGTTDP QLDTGAADES EAGDTQPDLQ AQFRIPSKPL EAPEPEKYTV RLPEGITGEE LDIIKLTAQF
201: VARNGKSFLT GLSNRENNNP QFHFMKPTHS MFTFFTSLVD AYSEVLMPPK DLKEKLRKSA ADLTTVLERC LHRLEWDRSQ EQQKKKEEDE KELERVQMAM
301: IDWHDFVVVE SIDFADEEDE ELPPPMTLDE VIRRSKASAM EEDEIVEPGK EVEMEMDEEE VKLVAEGMRA ANLEENVKIE NVHDEEAPMR IVKNWKRPED
401: RIPTERDPTK VVISPITGEL IPINEMSEHM RISLIDPKFK EQKDRMFAKI RETTLAQDDE IAKNIVGLAR LRPDIFGTTE EEVSNAVKAE IEKKKDEQPK
501: QVIWDGHTGS IGRTANQALS QNANGEEQGD GVYGDPNSFP GPAALPPPRP GVPIVRPLPP PPNLALNLPR PPPSAQYPGA PRPLGVPMMQ PMHQQHQLTM
601: PGPPGHPQMM MNRPPQMQPG MHVPPPPGSQ FAHHMQIPRP YGQLPPSAMG MMQPPPMPGM APPPPPEEAP PPLPEEPEAK RQKFDESALV PEDQFLAQHP
701: GPATIRVSKP NENDGQFMEI TVQSLSENVG SLKEKIAGEI QIPANKQKLS GKAGFLKDNM SLAHYNVGAG EILTLSLRER GGRKR
Arabidopsis Description
Probable splicing factor 3A subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXF1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.