CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY38128	Canola	cytosol	17.6	36.25
CDY62788	Canola	cytosol	4.98	34.75
CDX84020	Canola	nucleus	8.25	31.78
CDX89548	Canola	cytosol	6.31	30.95
CDX89545	Canola	cytosol	6.19	30.36
CDY38929	Canola	cytosol	5.95	28.99
CDY52037	Canola	cytosol	9.22	25.5
CDY52036	Canola	cytosol, plastid	5.7	25.27
CDY45277	Canola	cytosol, plastid	5.46	24.32
CDX84019	Canola	cytosol	5.46	24.06
CDY45276	Canola	cytosol	8.37	23.96
CDY21434	Canola	cytosol	1.94	22.54
CDY41093	Canola	cytosol	19.3	20.6
CDY21696	Canola	cytosol	8.37	20.23
CDX81896	Canola	cytosol	5.58	19.91
CDY58992	Canola	cytosol	5.58	19.83
Solyc02g081960.2.1	Tomato	cytosol, nucleus	18.33	19.64
CDY71524	Canola	cytosol	6.67	19.43
CDX71843	Canola	cytosol	4.98	18.81
Solyc04g005690.2.1	Tomato	cytosol, nucleus	17.48	18.75
PGSC0003DMT400018892	Potato	cytosol	18.2	18.7
CDY65449	Canola	cytosol	8.98	18.69
PGSC0003DMT400007349	Potato	cytosol	17.84	18.31
GSMUA_Achr3P03970_001	Banana	cytosol	17.35	18.26
KRH12470	Soybean	cytosol, endoplasmic reticulum, nucleus	16.63	18.24
KRH35776	Soybean	cytosol	17.6	18.1
VIT_01s0011g02040.t01	Wine grape	cytosol	17.84	18.06
KRG90981	Soybean	nucleus	17.48	18.05
KRH36511	Soybean	cytosol	17.48	17.87
GSMUA_Achr9P12650_001	Banana	cytosol	17.23	17.6
Os02t0245000-01	Rice	cytosol	16.14	16.79
TraesCS3B01G211900.1	Wheat	cytosol	15.41	16.56
EES00535	Sorghum	cytosol	16.02	16.44
TraesCS3A01G503600.1	Wheat	cytosol	15.78	16.43
Zm00001d008293_P001	Maize	cytosol	16.02	16.38
Zm00001d040343_P003	Maize	cytosol	15.9	16.23
TraesCS3D01G510100.1	Wheat	cytosol	15.53	16.12
TraesCS3B01G212000.1	Wheat	cytosol	11.16	15.92
HORVU3Hr1G110920.1	Barley	cytosol	15.78	15.87
CDX71844	Canola	cytosol, golgi, plasma membrane	3.88	15.84
TraesCS3B01G566900.1	Wheat	cytosol	15.29	15.22
KXG32223	Sorghum	nucleus, plastid	3.52	15.18
CDX83169	Canola	plasma membrane	1.82	14.29
CDY69291	Canola	cytosol, golgi	2.79	13.86
CDY58090	Canola	cytosol	8.74	13.79
CDY44531	Canola	cytosol	9.22	13.64
CDY09657	Canola	cytosol, nucleus, plastid	6.19	11.18
CDY72308	Canola	cytosol	8.86	11.18
CDY09653	Canola	nucleus	6.43	10.84
AT1G18050.1	Thale cress	nucleus	2.18	8.04

Protein Annotations

Gene3D:1.10.10.790	MapMan:35.1	GO:A0A078HKH4	UniProt:A0A078HKH4	EnsemblPlants:CDY38126	ProteinID:CDY38126
ProteinID:CDY38126.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0006139
GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00065409001	InterPro:IPR000061
InterPro:IPR035967	PFAM:PF01805	PFscan:PS50128	PANTHER:PTHR15316	PANTHER:PTHR15316:SF1	SMART:SM00648
SUPFAM:SSF109905	InterPro:SWAP/Surp_sf	InterPro:Surp	UniParc:UPI0004EDB434	SEG:seg	:

Description

BnaC02g06470DBnaC02g06470D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HKH4]

Coordinates

chrLK032416:-:250269..252827

Molecular Weight (calculated)

93865.8 Da

IEP (calculated)

5.972

GRAVY (calculated)

-0.272

Length

824 amino acids

Sequence
(BLAST)

001: MFTTQPEKTN FIEKVARLVS QKGLETERTL MALNNDNDKK FSFLQRSDPC HAYYQHKLNY YRKEAQVTRP QAPATTTHDC SVADGEEEPF CLLPTYSTLW
101: SSSYSRPAGI SLEDLYIMKL TAQFIARYDM HFLRALMEHV AQNPKPRFDF LKPTSSRFNF CGGLVRGYAS VIRPYIESLM RDGGGIMPLV LPSSASWTRD
201: DDYDGMPPCL QFFFERLQLE KLEAGNKMAL IDLHAFVSGV DFFAQRDNQS FACVMSKTPH LSKMMYEWPQ MQPSKLINSY DDDDDDDDTE PELIDAPPSY
301: EILEKQLTLK ELGIVKVTAM FVARYGSGFR RDLMDIVSMN PLFEFLRPSD CKCSKFFTSL VRVYSNVIMP SDKLWCGDDC TDSALEFFSS CLQLEKLENG
401: DETAAIDLHA LVGGVDCFSH MSESLFLAFA PQPERLSTMV KRRGCQLLTE FRKAQPDGGE ARPYRFESSF KFPEKGIKLK ELGVIILTAQ FVERYGENFR
501: RGLRRRVVMN TQFGFMVFGD RRHDFYCGIL CAYSSVLRPC KRMKKSDACT DTVLEVFFEI LQSQEEGEGI ELHDFVGGVD SFAHVEDEQY SVVVPAPVHV
601: LMNMIPRTLR LPDTLLLPPD CIIKVTAQFV ARYGTKFTGA LARRVAKTTQ FEFMNPTSGR SRFYTWYVER LSEVLKPYKK GDAFYQEKKR DACMNTVLEG
701: FFSCLDRLQQ EEDEAVGVVA LHGFVDVVDC FASMDHVLNQ HLTPPGSQVH LGAYGQPLMG MMQPAPPKLG LMSLPPPLPL PEEPEPKRRK FDVSALAPED
801: RLHNFQGWST IRVFVPNVGE VVIR

Best Arabidopsis Sequence Match ( AT3G49130.1 )
(BLAST)

001: MVDLFDFVGG GNYSAAMPPP ERLSVMIMNR VAQTQPDMVL QLPLGSQLTI PAKGITLKEL GVMKLTAQSS VRYGFDFWCG LWKRVYMNPL FQFLNPSDSR
101: SDFYNGFTAA YSRVLKPSKK LKKFDACTAT VLEGFFHRLH LFKLEEGVET AMIDLHGFVY GVDCFAHMAD DNYSAIMDPP ERPSMMINQL TQIQRNAPAP
201: HEKCLKRSYN FPYAFGGGIS LKELDLMKKV VMKPQFKFME PTNSVFGLYN VVVDAYSRVV KPSDDAYASM GMMQTARPEE PEAKRQKFDE SALNPEGAVR
301: RRHSRWQ

Arabidopsis Description

SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9SMU9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.