Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- golgi 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY69291 | Canola | cytosol, golgi | 16.97 | 22.29 |
| CDY21434 | Canola | cytosol | 5.96 | 18.31 |
| CDX81896 | Canola | cytosol | 16.51 | 15.58 |
| CDY58992 | Canola | cytosol | 16.51 | 15.52 |
| CDX84020 | Canola | nucleus | 14.68 | 14.95 |
| CDX83169 | Canola | plasma membrane | 6.42 | 13.33 |
| AT3G49130.1 | Thale cress | cytosol | 17.89 | 12.7 |
| CDX71844 | Canola | cytosol, golgi, plasma membrane | 11.47 | 12.38 |
| CDY71524 | Canola | cytosol | 15.14 | 11.66 |
| CDY45276 | Canola | cytosol | 15.14 | 11.46 |
| CDY52037 | Canola | cytosol | 13.76 | 10.07 |
| CDY21696 | Canola | cytosol | 15.6 | 9.97 |
| CDY38128 | Canola | cytosol | 17.43 | 9.5 |
| CDY38929 | Canola | cytosol | 7.34 | 9.47 |
| CDX89548 | Canola | cytosol | 6.88 | 8.93 |
| CDX89545 | Canola | cytosol | 6.88 | 8.93 |
| AT5G12280.1 | Thale cress | cytosol | 16.97 | 8.83 |
| AT3G27600.1 | Thale cress | cytosol | 10.55 | 7.35 |
| CDY65449 | Canola | cytosol | 13.3 | 7.32 |
| CDY58090 | Canola | cytosol | 16.05 | 6.7 |
| CDY44531 | Canola | cytosol | 16.97 | 6.64 |
| VIT_01s0011g02040.t01 | Wine grape | cytosol | 21.56 | 5.77 |
| KRH12470 | Soybean | cytosol, endoplasmic reticulum, nucleus | 19.72 | 5.73 |
| TraesCS3B01G212000.1 | Wheat | cytosol | 15.14 | 5.71 |
| CDY72308 | Canola | cytosol | 16.97 | 5.67 |
| Solyc04g005690.2.1 | Tomato | cytosol, nucleus | 19.72 | 5.6 |
| KRH36511 | Soybean | cytosol | 20.64 | 5.58 |
| CDY41093 | Canola | cytosol | 19.72 | 5.57 |
| Os02t0245000-01 | Rice | cytosol | 20.18 | 5.56 |
| TraesCS3B01G211900.1 | Wheat | cytosol | 19.27 | 5.48 |
| KRG90981 | Soybean | nucleus | 19.72 | 5.39 |
| KRH35776 | Soybean | cytosol | 19.72 | 5.37 |
| PGSC0003DMT400007349 | Potato | cytosol | 19.72 | 5.35 |
| EES00535 | Sorghum | cytosol | 19.72 | 5.35 |
| Zm00001d008293_P001 | Maize | cytosol | 19.72 | 5.33 |
| Solyc02g081960.2.1 | Tomato | cytosol, nucleus | 18.81 | 5.33 |
| Zm00001d040343_P003 | Maize | cytosol | 19.72 | 5.33 |
| AT5G06520.1 | Thale cress | cytosol | 16.51 | 5.3 |
| PGSC0003DMT400018892 | Potato | cytosol | 19.27 | 5.24 |
| GSMUA_Achr3P03970_001 | Banana | cytosol | 18.81 | 5.24 |
| GSMUA_Achr9P12650_001 | Banana | cytosol | 19.27 | 5.2 |
| TraesCS3A01G503600.1 | Wheat | cytosol | 18.35 | 5.06 |
| TraesCS3D01G510100.1 | Wheat | cytosol | 18.35 | 5.04 |
| CDY38126 | Canola | cytosol | 18.81 | 4.98 |
| HORVU3Hr1G110920.1 | Barley | cytosol | 18.35 | 4.88 |
| TraesCS3B01G566900.1 | Wheat | cytosol | 18.35 | 4.83 |
| CDY09657 | Canola | cytosol, nucleus, plastid | 10.09 | 4.82 |
| AT5G06890.1 | Thale cress | cytosol | 1.38 | 4.55 |
| CDY52036 | Canola | cytosol, plastid | 3.67 | 4.3 |
| CDY09653 | Canola | nucleus | 9.17 | 4.09 |
| CDY45277 | Canola | cytosol, plastid | 3.21 | 3.78 |
| CDY62788 | Canola | cytosol | 1.83 | 3.39 |
| CDX84019 | Canola | cytosol | 2.75 | 3.21 |
| KXG32223 | Sorghum | nucleus, plastid | 1.38 | 1.57 |
Protein Annotations
| Gene3D:1.10.10.790 | MapMan:35.2 | GO:A0A078C9Z3 | EnsemblPlants:CDX71843 | ProteinID:CDX71843 | ProteinID:CDX71843.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006396 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00155568001 | InterPro:IPR000061 | InterPro:IPR035967 |
| PFAM:PF01805 | PFscan:PS50128 | PANTHER:PTHR15316 | SMART:SM00648 | SUPFAM:SSF109905 | InterPro:SWAP/Surp_sf |
| InterPro:Surp | UniParc:UPI0004EEAAB3 | : | : | : | : |
Description
BnaC08g30310D
Coordinates
chrLK031795:-:818921..819642
Molecular Weight (calculated)
25316.4 Da
IEP (calculated)
6.622
GRAVY (calculated)
-0.221
Length
218 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGSRRRVME VDAFTGAVDY FAYMDVVGYS DVMPRPQRRS VMIAQLGHNT LRTPLSAPPF PSWCTTIFFV SPEVLGIIKL TALFVARYGK RIGWELMEKV
101: GRKPLFSFLD PSDCGFPCYN MVVKVYSKVL KNFELVYTVD IVLERYFQSL WDEEKDLDDL YSFVECVDSF AQMEDEEFYH KMGTREAHVY PFHDQTSRVH
201: SRPHYRGLCS NIGWKGDH
101: GRKPLFSFLD PSDCGFPCYN MVVKVYSKVL KNFELVYTVD IVLERYFQSL WDEEKDLDDL YSFVECVDSF AQMEDEEFYH KMGTREAHVY PFHDQTSRVH
201: SRPHYRGLCS NIGWKGDH
001: MVDLFDFVGG GNYSAAMPPP ERLSVMIMNR VAQTQPDMVL QLPLGSQLTI PAKGITLKEL GVMKLTAQSS VRYGFDFWCG LWKRVYMNPL FQFLNPSDSR
101: SDFYNGFTAA YSRVLKPSKK LKKFDACTAT VLEGFFHRLH LFKLEEGVET AMIDLHGFVY GVDCFAHMAD DNYSAIMDPP ERPSMMINQL TQIQRNAPAP
201: HEKCLKRSYN FPYAFGGGIS LKELDLMKKV VMKPQFKFME PTNSVFGLYN VVVDAYSRVV KPSDDAYASM GMMQTARPEE PEAKRQKFDE SALNPEGAVR
301: RRHSRWQ
101: SDFYNGFTAA YSRVLKPSKK LKKFDACTAT VLEGFFHRLH LFKLEEGVET AMIDLHGFVY GVDCFAHMAD DNYSAIMDPP ERPSMMINQL TQIQRNAPAP
201: HEKCLKRSYN FPYAFGGGIS LKELDLMKKV VMKPQFKFME PTNSVFGLYN VVVDAYSRVV KPSDDAYASM GMMQTARPEE PEAKRQKFDE SALNPEGAVR
301: RRHSRWQ
Arabidopsis Description
SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9SMU9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.