Factsheet for AT3G27600.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G06890.1	Thale cress	cytosol	7.99	37.88
AT5G12280.1	Thale cress	cytosol	18.85	14.08
AT1G14650.1	Thale cress	cytosol	30.99	12.36
Solyc04g005690.2.1	Tomato	cytosol, nucleus	27.8	11.33
KRG90981	Soybean	nucleus	28.11	11.03
KRH36511	Soybean	cytosol	28.11	10.92
KRH35776	Soybean	cytosol	27.8	10.86
CDY69291	Canola	cytosol, golgi	5.75	10.84
PGSC0003DMT400007349	Potato	cytosol	27.48	10.71
VIT_01s0011g02040.t01	Wine grape	cytosol	27.48	10.57
CDX71843	Canola	cytosol	7.35	10.55
Solyc02g081960.2.1	Tomato	cytosol, nucleus	25.88	10.53
AT1G14640.1	Thale cress	cytosol	23.96	10.2
KRH12470	Soybean	cytosol, endoplasmic reticulum, nucleus	24.28	10.12
PGSC0003DMT400018892	Potato	cytosol	25.56	9.98
GSMUA_Achr9P12650_001	Banana	cytosol	25.24	9.79
GSMUA_Achr3P03970_001	Banana	cytosol	24.28	9.71
EES00535	Sorghum	cytosol	24.6	9.59
Zm00001d040343_P003	Maize	cytosol	24.6	9.54
TraesCS3D01G510100.1	Wheat	cytosol	23.96	9.45
KXG32223	Sorghum	nucleus, plastid	5.75	9.42
Zm00001d008293_P001	Maize	cytosol	23.96	9.31
TraesCS3B01G211900.1	Wheat	cytosol	22.68	9.26
Os02t0245000-01	Rice	cytosol	23.32	9.22
HORVU3Hr1G110920.1	Barley	cytosol	23.64	9.04
TraesCS3A01G503600.1	Wheat	cytosol	22.36	8.85
TraesCS3B01G566900.1	Wheat	cytosol	23.32	8.82
TraesCS3B01G212000.1	Wheat	cytosol	15.97	8.65
AT3G49130.1	Thale cress	cytosol	7.99	8.14
AT4G16200.1	Thale cress	nucleus	7.35	7.99
AT5G06520.1	Thale cress	cytosol	13.42	6.19
AT1G18050.1	Thale cress	nucleus	3.51	4.91

Protein Annotations

Gene3D:1.10.10.790	MapMan:35.1	EntrezGene:822382	ProteinID:AEE77342.1	ArrayExpress:AT3G27600	EnsemblPlantsGene:AT3G27600
RefSeq:AT3G27600	TAIR:AT3G27600	RefSeq:AT3G27600-TAIR-G	EnsemblPlants:AT3G27600.1	TAIR:AT3G27600.1	Unigene:At.53521
ncoils:Coil	UniProt:F4IWK8	GO:GO:0000381	GO:GO:0000389	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005686	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016043	GO:GO:0071004	GO:GO:0071013	InterPro:IPR000061	InterPro:IPR035967	RefSeq:NP_189397.1
PFAM:PF01805	PFscan:PS50128	PANTHER:PTHR15316	PANTHER:PTHR15316:SF1	SMART:SM00648	SUPFAM:SSF109905
InterPro:SWAP/Surp_sf	InterPro:Surp	UniParc:UPI000016357F	:	:	:

Description

SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4IWK8]

Coordinates

chr3:-:10223743..10224948

Molecular Weight (calculated)

36147.0 Da

IEP (calculated)

6.893

GRAVY (calculated)

-0.495

Length

313 amino acids

Sequence
(BLAST)

001: MASYISTGGL VVEKVMRYLV VGDARYNFMG ISDPFHPFYQ QRLTQYRSLN QQDEANLDYD ATLAAYMRKA TEFRSRIQQE GPNLDDDDAD AGQRIVLPHL
101: LDYRLPKGMS VKNLELSSSQ HSLGLGFKER DGFEFTNPTD SKFPRFTLFV LEYSEVFKAP KDLKEKWDSL HDVKWRDGGV MSMVNWHASF EKEFFANNEE
201: LPPPEITETG WCIIMISVVD VDGRELNIIE KTVQSLSENV ASFKEKIAAD KPKNPTREAG DIRKIRVVKG QQQVTSILKC RSRRNPHFVI LYVWEIDRFG
301: QALFMHGNVF RRT

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.