Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d008293_P001 | Maize | cytosol | 95.04 | 95.16 |
| EES00535 | Sorghum | cytosol | 92.69 | 93.15 |
| Os02t0245000-01 | Rice | cytosol | 78.81 | 80.3 |
| TraesCS3B01G212000.1 | Wheat | cytosol | 57.0 | 79.58 |
| TraesCS3D01G510100.1 | Wheat | cytosol | 76.08 | 77.33 |
| TraesCS3B01G211900.1 | Wheat | cytosol | 73.11 | 76.92 |
| TraesCS3A01G503600.1 | Wheat | cytosol | 75.34 | 76.86 |
| HORVU3Hr1G110920.1 | Barley | cytosol | 75.71 | 74.6 |
| TraesCS3B01G566900.1 | Wheat | cytosol | 75.71 | 73.79 |
| GSMUA_Achr3P03970_001 | Banana | cytosol | 61.09 | 62.96 |
| GSMUA_Achr9P12650_001 | Banana | cytosol | 62.33 | 62.33 |
| KRH35776 | Soybean | cytosol | 61.71 | 62.17 |
| KRH12470 | Soybean | cytosol, endoplasmic reticulum, nucleus | 57.62 | 61.92 |
| Solyc02g081960.2.1 | Tomato | cytosol, nucleus | 58.98 | 61.9 |
| KRG90981 | Soybean | nucleus | 60.97 | 61.65 |
| KRH36511 | Soybean | cytosol | 61.34 | 61.41 |
| Solyc04g005690.2.1 | Tomato | cytosol, nucleus | 58.24 | 61.2 |
| VIT_01s0011g02040.t01 | Wine grape | cytosol | 61.34 | 60.81 |
| PGSC0003DMT400007349 | Potato | cytosol | 60.1 | 60.4 |
| PGSC0003DMT400018892 | Potato | cytosol | 59.23 | 59.6 |
| Bra016688.1-P | Field mustard | cytosol | 50.68 | 59.1 |
| CDX84020 | Canola | nucleus | 15.61 | 58.88 |
| CDY41093 | Canola | cytosol | 55.76 | 58.29 |
| AT1G14650.1 | Thale cress | cytosol | 56.01 | 57.58 |
| Bra026198.1-P | Field mustard | cytosol, plastid | 12.39 | 54.35 |
| CDY45277 | Canola | cytosol, plastid | 12.14 | 52.97 |
| CDY52036 | Canola | cytosol, plastid | 12.14 | 52.69 |
| CDY52037 | Canola | cytosol | 19.45 | 52.68 |
| CDY45276 | Canola | cytosol | 18.71 | 52.43 |
| AT1G14640.1 | Thale cress | cytosol | 47.21 | 51.84 |
| CDX84019 | Canola | cytosol | 11.77 | 50.8 |
| AT5G06890.1 | Thale cress | cytosol | 3.97 | 48.48 |
| CDY21434 | Canola | cytosol | 3.59 | 40.85 |
| Bra000608.1-P | Field mustard | cytosol | 3.59 | 40.85 |
| CDY62788 | Canola | cytosol | 5.7 | 38.98 |
| CDX89545 | Canola | cytosol | 7.43 | 35.71 |
| CDX89548 | Canola | cytosol | 7.43 | 35.71 |
| CDY38929 | Canola | cytosol | 7.31 | 34.91 |
| CDY71524 | Canola | cytosol | 11.52 | 32.86 |
| Bra032181.1-P | Field mustard | cytosol | 8.43 | 31.48 |
| CDX83169 | Canola | plasma membrane | 4.09 | 31.43 |
| AT5G12280.1 | Thale cress | cytosol | 15.99 | 30.79 |
| CDY65449 | Canola | cytosol | 14.87 | 30.3 |
| CDY21696 | Canola | cytosol | 11.15 | 26.39 |
| CDY09657 | Canola | cytosol, nucleus, plastid | 14.5 | 25.66 |
| Bra023557.1-P | Field mustard | mitochondrion | 7.31 | 24.79 |
| AT3G27600.1 | Thale cress | cytosol | 9.54 | 24.6 |
| AT3G49130.1 | Thale cress | cytosol | 9.29 | 24.43 |
| Bra031050.1-P | Field mustard | cytosol | 12.02 | 24.37 |
| CDY09653 | Canola | nucleus | 14.25 | 23.52 |
| CDY38128 | Canola | cytosol | 11.03 | 22.25 |
| CDY69291 | Canola | cytosol, golgi | 4.46 | 21.69 |
| CDX81896 | Canola | cytosol | 6.07 | 21.21 |
| CDY58992 | Canola | cytosol | 6.07 | 21.12 |
| CDX71843 | Canola | cytosol | 5.33 | 19.72 |
| AT4G16200.1 | Thale cress | nucleus | 6.94 | 19.44 |
| CDY72308 | Canola | cytosol | 15.37 | 18.99 |
| CDY58090 | Canola | cytosol | 11.9 | 18.39 |
| Bra007503.1-P | Field mustard | cytosol | 11.77 | 18.16 |
| CDY44531 | Canola | cytosol | 11.77 | 17.06 |
| CDX71844 | Canola | cytosol, golgi, plasma membrane | 4.09 | 16.34 |
| AT5G06520.1 | Thale cress | cytosol | 13.38 | 15.91 |
| CDY38126 | Canola | cytosol | 16.23 | 15.9 |
| AT1G18050.1 | Thale cress | nucleus | 2.85 | 10.27 |
Protein Annotations
| Gene3D:1.10.10.790 | EntrezGene:100383468 | MapMan:16.4.1.2.3.1 | Gene3D:3.10.20.90 | EMBL:BT067293 | UniProt:C0PG74 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | InterPro:IPR000061 |
| InterPro:IPR000626 | InterPro:IPR035967 | ProteinID:ONM31197.1 | ProteinID:ONM31198.1 | ProteinID:ONM31200.1 | PFAM:PF00240 |
| PFAM:PF01805 | PFAM:PF12230 | PFscan:PS50053 | PFscan:PS50128 | PANTHER:PTHR15316 | PANTHER:PTHR15316:SF1 |
| InterPro:SF3A1 | SMART:SM00213 | SMART:SM00648 | SUPFAM:SSF109905 | SUPFAM:SSF54236 | InterPro:SWAP/Surp_sf |
| InterPro:Surp | UniParc:UPI000195CA29 | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_dom | EnsemblPlantsGene:Zm00001d040343 | EnsemblPlants:Zm00001d040343_P003 |
| EnsemblPlants:Zm00001d040343_T003 | SEG:seg | : | : | : | : |
Description
Probable splicing factor 3A subunit 1
Coordinates
chr3:-:39041880..39045335
Molecular Weight (calculated)
88523.7 Da
IEP (calculated)
4.867
GRAVY (calculated)
-0.567
Length
807 amino acids
Sequence
(BLAST)
(BLAST)
001: MPAAMGTPIL TLPAPDGNGT GGGDANQQLL QAPPKPPPPG AKTDPPATVA THTRTIGIIH PPPDIRVIIE KTATFVAKNG PEFERRIISL NQGNAKFNFL
101: QPSDPYHAYY QHRVSEIAAT PPSADGLSGA ETDTAPAEAP ASTPADGAAA VPADGAAVDT KADHSAPFRV VPPPKVLVPP KAELYTVRLP EGITGEELDI
201: IKLTAQFVAR NGKNFLTSLA QRESNNMQFH FIRPTHSMFP FFTELTDAYS RVLRPAEGVP ALLKELREGS KDLTTVLERC LNRLEWDRSQ EQARQQAEDE
301: VEQERMQMSM IDWHDFVVVE TIEFADDEYE GLPVPLTLEE LKRQKRMENL GEEEAMDLTE PAKEVEMEMD EEEMQLVEEG MRAAQLEEND GGSQVNVAGD
401: DETPMRIVKN YKRPEERIPA ERDPTKFVVS PITGELIPIS EMEEHMRISL IDPKYKEQKE RMLAKIKETT LAPDDEISRN IVGLARTRPD IFGTTEEEVS
501: NAVKAEIEKK KDEQPKQVIW DGHSGSIGRT ATHALSQIQG GEEQFDASNV DGRPVPGPAP LVRPGMPLPR PPQPLPLVNV PRFIAPPAPY SVPPPGSHMP
601: GVPQMMPHMH LHPQQIPGQP PMVRMPGQMV HMPTSIPPPP GQTQFMPGPP PHTFAMPPSS HMPHMINPIG IPQPPAPPLP PQPPAEEQPP PPDEPEPKRQ
701: RTDDGSLIPA EQFLAQHQGP ASISVSVPNL DEGNLRGQVL QIPVQSLSDT VGSLKEQIAG ELQLPANKQK LSVRTSFLKD NLTLAYYNVG PGVVINLTLR
801: ERGGRKK
101: QPSDPYHAYY QHRVSEIAAT PPSADGLSGA ETDTAPAEAP ASTPADGAAA VPADGAAVDT KADHSAPFRV VPPPKVLVPP KAELYTVRLP EGITGEELDI
201: IKLTAQFVAR NGKNFLTSLA QRESNNMQFH FIRPTHSMFP FFTELTDAYS RVLRPAEGVP ALLKELREGS KDLTTVLERC LNRLEWDRSQ EQARQQAEDE
301: VEQERMQMSM IDWHDFVVVE TIEFADDEYE GLPVPLTLEE LKRQKRMENL GEEEAMDLTE PAKEVEMEMD EEEMQLVEEG MRAAQLEEND GGSQVNVAGD
401: DETPMRIVKN YKRPEERIPA ERDPTKFVVS PITGELIPIS EMEEHMRISL IDPKYKEQKE RMLAKIKETT LAPDDEISRN IVGLARTRPD IFGTTEEEVS
501: NAVKAEIEKK KDEQPKQVIW DGHSGSIGRT ATHALSQIQG GEEQFDASNV DGRPVPGPAP LVRPGMPLPR PPQPLPLVNV PRFIAPPAPY SVPPPGSHMP
601: GVPQMMPHMH LHPQQIPGQP PMVRMPGQMV HMPTSIPPPP GQTQFMPGPP PHTFAMPPSS HMPHMINPIG IPQPPAPPLP PQPPAEEQPP PPDEPEPKRQ
701: RTDDGSLIPA EQFLAQHQGP ASISVSVPNL DEGNLRGQVL QIPVQSLSDT VGSLKEQIAG ELQLPANKQK LSVRTSFLKD NLTLAYYNVG PGVVINLTLR
801: ERGGRKK
001: MFSSMQILPL EAPPTDGKLG PLPPSQLTDQ EVEERELQAE QNNSNLAPPA AVATHTRTIG IIHPPPDIRT IVEKTAQFVS KNGLEFEKRI IVSNEKNAKF
101: NFLKSSDPYH AFYQHKLTEY RAQNKDGAQG TDDSDGTTDP QLDTGAADES EAGDTQPDLQ AQFRIPSKPL EAPEPEKYTV RLPEGITGEE LDIIKLTAQF
201: VARNGKSFLT GLSNRENNNP QFHFMKPTHS MFTFFTSLVD AYSEVLMPPK DLKEKLRKSA ADLTTVLERC LHRLEWDRSQ EQQKKKEEDE KELERVQMAM
301: IDWHDFVVVE SIDFADEEDE ELPPPMTLDE VIRRSKASAM EEDEIVEPGK EVEMEMDEEE VKLVAEGMRA ANLEENVKIE NVHDEEAPMR IVKNWKRPED
401: RIPTERDPTK VVISPITGEL IPINEMSEHM RISLIDPKFK EQKDRMFAKI RETTLAQDDE IAKNIVGLAR LRPDIFGTTE EEVSNAVKAE IEKKKDEQPK
501: QVIWDGHTGS IGRTANQALS QNANGEEQGD GVYGDPNSFP GPAALPPPRP GVPIVRPLPP PPNLALNLPR PPPSAQYPGA PRPLGVPMMQ PMHQQHQLTM
601: PGPPGHPQMM MNRPPQMQPG MHVPPPPGSQ FAHHMQIPRP YGQLPPSAMG MMQPPPMPGM APPPPPEEAP PPLPEEPEAK RQKFDESALV PEDQFLAQHP
701: GPATIRVSKP NENDGQFMEI TVQSLSENVG SLKEKIAGEI QIPANKQKLS GKAGFLKDNM SLAHYNVGAG EILTLSLRER GGRKR
101: NFLKSSDPYH AFYQHKLTEY RAQNKDGAQG TDDSDGTTDP QLDTGAADES EAGDTQPDLQ AQFRIPSKPL EAPEPEKYTV RLPEGITGEE LDIIKLTAQF
201: VARNGKSFLT GLSNRENNNP QFHFMKPTHS MFTFFTSLVD AYSEVLMPPK DLKEKLRKSA ADLTTVLERC LHRLEWDRSQ EQQKKKEEDE KELERVQMAM
301: IDWHDFVVVE SIDFADEEDE ELPPPMTLDE VIRRSKASAM EEDEIVEPGK EVEMEMDEEE VKLVAEGMRA ANLEENVKIE NVHDEEAPMR IVKNWKRPED
401: RIPTERDPTK VVISPITGEL IPINEMSEHM RISLIDPKFK EQKDRMFAKI RETTLAQDDE IAKNIVGLAR LRPDIFGTTE EEVSNAVKAE IEKKKDEQPK
501: QVIWDGHTGS IGRTANQALS QNANGEEQGD GVYGDPNSFP GPAALPPPRP GVPIVRPLPP PPNLALNLPR PPPSAQYPGA PRPLGVPMMQ PMHQQHQLTM
601: PGPPGHPQMM MNRPPQMQPG MHVPPPPGSQ FAHHMQIPRP YGQLPPSAMG MMQPPPMPGM APPPPPEEAP PPLPEEPEAK RQKFDESALV PEDQFLAQHP
701: GPATIRVSKP NENDGQFMEI TVQSLSENVG SLKEKIAGEI QIPANKQKLS GKAGFLKDNM SLAHYNVGAG EILTLSLRER GGRKR
Arabidopsis Description
Probable splicing factor 3A subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXF1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.