Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX84019 | Canola | cytosol | 8.88 | 31.02 |
| CDY45277 | Canola | cytosol, plastid | 8.73 | 30.81 |
| CDY52036 | Canola | cytosol, plastid | 8.58 | 30.11 |
| CDY58090 | Canola | cytosol | 22.82 | 28.54 |
| CDY44531 | Canola | cytosol | 22.82 | 26.75 |
| CDY71524 | Canola | cytosol | 10.72 | 24.73 |
| CDX84020 | Canola | nucleus | 7.35 | 22.43 |
| CDY65449 | Canola | cytosol | 13.48 | 22.22 |
| CDX89545 | Canola | cytosol | 5.67 | 22.02 |
| CDY38929 | Canola | cytosol | 5.67 | 21.89 |
| CDY52037 | Canola | cytosol | 9.8 | 21.48 |
| CDY62788 | Canola | cytosol | 3.83 | 21.19 |
| CDY21434 | Canola | cytosol | 2.3 | 21.13 |
| CDX89548 | Canola | cytosol | 5.36 | 20.83 |
| CDY69291 | Canola | cytosol, golgi | 5.21 | 20.48 |
| CDX81896 | Canola | cytosol | 7.2 | 20.35 |
| CDY58992 | Canola | cytosol | 7.2 | 20.26 |
| CDY45276 | Canola | cytosol | 8.73 | 19.79 |
| CDX71844 | Canola | cytosol, golgi, plasma membrane | 5.82 | 18.81 |
| CDY41093 | Canola | cytosol | 21.75 | 18.39 |
| CDY09657 | Canola | cytosol, nucleus, plastid | 12.1 | 17.32 |
| CDY21696 | Canola | cytosol | 8.88 | 17.01 |
| CDY38128 | Canola | cytosol | 10.41 | 17.0 |
| CDX71843 | Canola | cytosol | 5.67 | 16.97 |
| TraesCS3B01G212000.1 | Wheat | cytosol | 14.85 | 16.78 |
| KRH12470 | Soybean | cytosol, endoplasmic reticulum, nucleus | 19.3 | 16.78 |
| KRH36511 | Soybean | cytosol | 20.21 | 16.38 |
| GSMUA_Achr3P03970_001 | Banana | cytosol | 19.6 | 16.35 |
| KRG90981 | Soybean | nucleus | 19.91 | 16.29 |
| VIT_01s0011g02040.t01 | Wine grape | cytosol | 20.21 | 16.22 |
| CDX83169 | Canola | plasma membrane | 2.6 | 16.19 |
| TraesCS3B01G211900.1 | Wheat | cytosol | 18.99 | 16.17 |
| KRH35776 | Soybean | cytosol | 19.75 | 16.1 |
| EES00535 | Sorghum | cytosol | 19.75 | 16.06 |
| CDY09653 | Canola | nucleus | 11.94 | 15.95 |
| Solyc04g005690.2.1 | Tomato | cytosol, nucleus | 18.68 | 15.89 |
| Solyc02g081960.2.1 | Tomato | cytosol, nucleus | 18.68 | 15.86 |
| PGSC0003DMT400007349 | Potato | cytosol | 19.45 | 15.82 |
| TraesCS3D01G510100.1 | Wheat | cytosol | 19.14 | 15.74 |
| TraesCS3A01G503600.1 | Wheat | cytosol | 18.99 | 15.68 |
| Os02t0245000-01 | Rice | cytosol | 18.99 | 15.66 |
| PGSC0003DMT400018892 | Potato | cytosol | 18.99 | 15.46 |
| Zm00001d008293_P001 | Maize | cytosol | 18.99 | 15.38 |
| GSMUA_Achr9P12650_001 | Banana | cytosol | 18.99 | 15.37 |
| Zm00001d040343_P003 | Maize | cytosol | 18.99 | 15.37 |
| HORVU3Hr1G110920.1 | Barley | cytosol | 18.99 | 15.14 |
| TraesCS3B01G566900.1 | Wheat | cytosol | 18.84 | 14.86 |
| KXG32223 | Sorghum | nucleus, plastid | 3.83 | 13.09 |
| CDY38126 | Canola | cytosol | 11.18 | 8.86 |
Protein Annotations
| Gene3D:1.10.10.790 | Gene3D:3.10.20.90 | MapMan:35.2 | GO:A0A078JXF8 | UniProt:A0A078JXF8 | EnsemblPlants:CDY72308 |
| ProteinID:CDY72308 | ProteinID:CDY72308.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00027449001 |
| InterPro:IPR000061 | InterPro:IPR035967 | PFAM:PF01805 | PFscan:PS50128 | PANTHER:PTHR15316 | PANTHER:PTHR15316:SF1 |
| SMART:SM00648 | SUPFAM:SSF109905 | SUPFAM:SSF54236 | InterPro:SWAP/Surp_sf | InterPro:Surp | UniParc:UPI0004EE4360 |
| InterPro:Ubiquitin-like_domsf | SEG:seg | : | : | : | : |
Description
BnaC03g75880DBnaC03g75880D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JXF8]
Coordinates
chrLK050044:+:2..2149
Molecular Weight (calculated)
74433.0 Da
IEP (calculated)
6.510
GRAVY (calculated)
-0.118
Length
653 amino acids
Sequence
(BLAST)
(BLAST)
001: DADEAPLGEF FRYVQLEKLH QKVTDLHALA YGLDCMDDRD ASPLAMPPSF SLMTMPHHPN QDEDDIQPQF IIKLTAFFVS RYGQCFLRAL MMREVSNPHF
101: DFLFFRWDQR PQFPSMEPAE IRSHVFNVLV YAYSKILMPS KRANDPGFCS VVVLAVFSSR LLRLEKPKLG EGVKTRAIID LHAFVAGVDY LAHMHEPQYS
201: GIMSPPQRLS VMIKNLQSPL QTPHPGILVL LPLGRKLSDY PQCSRSMCSH LEYTFPQSIG PDELGVIKLT ALFVTRYGMS FMEALMKIAP TEFEFLKLTH
301: SRRALFFAFI DVYSSVLKPF TKGGDHLAMA LEFFFYCLQL NKLKKGVAVM ELSAFLSGVD HFAWMDVNGY SAIVAAPECR SVMMNRLTQI DTGGGLDQPP
401: TLRTPFSFPS NYYRFSSPHD IAIIKLTAVF VARYGVRICR ELKKKLDART VLKFMEPSDE LFHFYEVAVH AYSNILEGSD DADTETVIER YFHCVQWEEQ
501: KEEGSMTFDD DLYGFVEAVD CFAQLEDGYF FQMMGNIHLH LVRPCDCLYE QTSSSEPKRR KVDESSSVIE DSSTIKVWVP TVYGRKVIKI AVGSLSEKVS
601: SLKEKIANEI QMPAKDLKLR GKEGVLKGDK SLAQNDVETG EILTLTWRIS RWY
101: DFLFFRWDQR PQFPSMEPAE IRSHVFNVLV YAYSKILMPS KRANDPGFCS VVVLAVFSSR LLRLEKPKLG EGVKTRAIID LHAFVAGVDY LAHMHEPQYS
201: GIMSPPQRLS VMIKNLQSPL QTPHPGILVL LPLGRKLSDY PQCSRSMCSH LEYTFPQSIG PDELGVIKLT ALFVTRYGMS FMEALMKIAP TEFEFLKLTH
301: SRRALFFAFI DVYSSVLKPF TKGGDHLAMA LEFFFYCLQL NKLKKGVAVM ELSAFLSGVD HFAWMDVNGY SAIVAAPECR SVMMNRLTQI DTGGGLDQPP
401: TLRTPFSFPS NYYRFSSPHD IAIIKLTAVF VARYGVRICR ELKKKLDART VLKFMEPSDE LFHFYEVAVH AYSNILEGSD DADTETVIER YFHCVQWEEQ
501: KEEGSMTFDD DLYGFVEAVD CFAQLEDGYF FQMMGNIHLH LVRPCDCLYE QTSSSEPKRR KVDESSSVIE DSSTIKVWVP TVYGRKVIKI AVGSLSEKVS
601: SLKEKIANEI QMPAKDLKLR GKEGVLKGDK SLAQNDVETG EILTLTWRIS RWY
001: MVDLFDFVGG GNYSAAMPPP ERLSVMIMNR VAQTQPDMVL QLPLGSQLTI PAKGITLKEL GVMKLTAQSS VRYGFDFWCG LWKRVYMNPL FQFLNPSDSR
101: SDFYNGFTAA YSRVLKPSKK LKKFDACTAT VLEGFFHRLH LFKLEEGVET AMIDLHGFVY GVDCFAHMAD DNYSAIMDPP ERPSMMINQL TQIQRNAPAP
201: HEKCLKRSYN FPYAFGGGIS LKELDLMKKV VMKPQFKFME PTNSVFGLYN VVVDAYSRVV KPSDDAYASM GMMQTARPEE PEAKRQKFDE SALNPEGAVR
301: RRHSRWQ
101: SDFYNGFTAA YSRVLKPSKK LKKFDACTAT VLEGFFHRLH LFKLEEGVET AMIDLHGFVY GVDCFAHMAD DNYSAIMDPP ERPSMMINQL TQIQRNAPAP
201: HEKCLKRSYN FPYAFGGGIS LKELDLMKKV VMKPQFKFME PTNSVFGLYN VVVDAYSRVV KPSDDAYASM GMMQTARPEE PEAKRQKFDE SALNPEGAVR
301: RRHSRWQ
Arabidopsis Description
SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9SMU9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.