CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, cytosol

Predictor Summary:

nucleus 1
cytosol 1
mitochondrion 1
golgi 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, plasma membrane
Any Predictor:	cytosol, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44531	Canola	cytosol	65.84	23.88
CDY58090	Canola	cytosol	61.39	23.75
CDY21434	Canola	cytosol	6.93	19.72
CDX89545	Canola	cytosol	11.39	13.69
CDX89548	Canola	cytosol	11.39	13.69
CDY38929	Canola	cytosol	11.39	13.61
CDX83169	Canola	plasma membrane	6.93	13.33
CDX81896	Canola	cytosol	13.86	12.12
CDY58992	Canola	cytosol	13.86	12.07
CDX71843	Canola	cytosol	12.38	11.47
CDY52037	Canola	cytosol	13.86	9.4
CDX84020	Canola	nucleus	9.9	9.35
CDY69291	Canola	cytosol, golgi	7.43	9.04
KXG32223	Sorghum	nucleus, plastid	8.42	8.9
CDY71524	Canola	cytosol	12.38	8.83
CDY45276	Canola	cytosol	11.88	8.33
CDY65449	Canola	cytosol	14.85	7.58
CDY21696	Canola	cytosol	11.88	7.04
CDY62788	Canola	cytosol	3.96	6.78
CDY72308	Canola	cytosol	18.81	5.82
CDY38128	Canola	cytosol	10.4	5.25
CDY09657	Canola	cytosol, nucleus, plastid	11.39	5.04
KRH12470	Soybean	cytosol, endoplasmic reticulum, nucleus	17.33	4.66
EES00535	Sorghum	cytosol	17.82	4.48
GSMUA_Achr3P03970_001	Banana	cytosol	16.83	4.34
CDY41093	Canola	cytosol	16.34	4.27
PGSC0003DMT400007349	Potato	cytosol	16.83	4.23
GSMUA_Achr9P12650_001	Banana	cytosol	16.83	4.21
KRH35776	Soybean	cytosol	16.34	4.12
PGSC0003DMT400018892	Potato	cytosol	16.34	4.11
Zm00001d008293_P001	Maize	cytosol	16.34	4.09
Zm00001d040343_P003	Maize	cytosol	16.34	4.09
VIT_01s0011g02040.t01	Wine grape	cytosol	16.34	4.05
KRG90981	Soybean	nucleus	15.84	4.01
KRH36511	Soybean	cytosol	15.84	3.97
CDY09653	Canola	nucleus	9.41	3.89
CDY38126	Canola	cytosol	15.84	3.88
TraesCS3B01G211900.1	Wheat	cytosol	14.36	3.78
Solyc04g005690.2.1	Tomato	cytosol, nucleus	14.36	3.78
HORVU3Hr1G110920.1	Barley	cytosol	14.85	3.66
Os02t0245000-01	Rice	cytosol	14.36	3.66
Solyc02g081960.2.1	Tomato	cytosol, nucleus	13.86	3.64
TraesCS3A01G503600.1	Wheat	cytosol	13.86	3.54
TraesCS3D01G510100.1	Wheat	cytosol	13.86	3.53
TraesCS3B01G566900.1	Wheat	cytosol	14.36	3.5
CDX84019	Canola	cytosol	2.97	3.21
TraesCS3B01G212000.1	Wheat	cytosol	8.91	3.11
CDY45277	Canola	cytosol, plastid	0.99	1.08
CDY52036	Canola	cytosol, plastid	0.99	1.08

Protein Annotations

EnsemblPlants:CDX71844	EnsemblPlantsGene:GSBRNA2T00155569001	GO:A0A078C6Q3	ProteinID:CDX71844	ProteinID:CDX71844.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI0004EF4CD1	MapMan:35.2	:	:	:

Description

BnaC08g30300D

Coordinates

chrLK031795:-:819723..820331

Molecular Weight (calculated)

23177.4 Da

IEP (calculated)

9.688

GRAVY (calculated)

-0.033

Length

202 amino acids

Sequence
(BLAST)

001: MTQFGGYDYC TERAMQYLTL EPGKVPEALK LYAEAFQAKL IDRYEDQSVQ LRILNSYVII TPWDSSDSFL ELPTDLNSIR RIRQDKRFVE IDGTENKSVM
101: MKDPFGITFL LRMEKKKMSR SGVDHGLLFR RACNPIAFAF PQGIRPNDLC TIKLTALFVT RYGMAFKKAL KKIASLLSLG FWILIISGGV FFSILWASTP
201: QY

Best Arabidopsis Sequence Match ( AT5G06520.1 )
(BLAST)

001: MYTSMHKDLR SRQNNSNQVG ADSESTRLVN IRNLAKIVND SRFRSLSPDT PATHDAQDYL WPPSLDMPLL APPVNFSHLP LGITFTRKEL ELIKLTAQFV
101: AVYGKYFQRE LTTRVVESPL FEFLKPTDSR NSFYTRIILG YQGVLMPSQK LKTKSEVFDG FSKLIAQVPV KDEDDVEMAM TDLHAYEYFA NMSINDLRAP
201: APVKFAFLTR GVTFTRNELD TIKLTAQFVA VYGTLFRTEL MKRVFISPKF DFFKSTDSKC SFYLRLVDGY SRVLRRSRKN GAGLGEVVVG FLKLLDQVVE
301: KKDAVEMALT DLHALEFFAN VDGGVLQPRP EQYHPMMPTV PPLIMPQLGS QFTQLQVPQP SCSPPVRMMS PPRPQNDLQS GQSNSNKAPA SVAPIEPPPE
401: IRSCVENTAL IVSKNGLEIE RKMMELSMND ARHRFVWSTD PYHAFYQLKL AEYRAQNQDR AHDIQPNVLR SFGFGFEFPE KEITLKELGI IKLTAQFMAR
501: YGMNFVQGLR KRVVGNPQFK FLESTNNSRF SFYNGLVIAY SRVLMPSKML SKSDDCTATV VDGFLSCLQL EKREEGVDID MIDLLDCFAR LEDADYSANV
601: PQPQHLSTQM QPPHTPETSP PLPLPLKNES SPVLADQHPD SSTIDDEWQV IDFTGQSLPD NVASLKDKTA GGIQIPANK

Arabidopsis Description

Gb [Source:UniProtKB/TrEMBL;Acc:Q9FG18]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.