Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra023557.1-P | Field mustard | mitochondrion | 20.0 | 33.61 |
| CDY69291 | Canola | cytosol, golgi | 9.0 | 21.69 |
| CDY71524 | Canola | cytosol | 15.0 | 21.2 |
| CDY52036 | Canola | cytosol, plastid | 9.75 | 20.97 |
| CDX84020 | Canola | nucleus | 11.0 | 20.56 |
| CDY45277 | Canola | cytosol, plastid | 9.5 | 20.54 |
| CDX84019 | Canola | cytosol | 9.5 | 20.32 |
| CDX81896 | Canola | cytosol | 10.75 | 18.61 |
| CDY58992 | Canola | cytosol | 10.75 | 18.53 |
| CDY38126 | Canola | cytosol | 36.25 | 17.6 |
| CDX71843 | Canola | cytosol | 9.5 | 17.43 |
| CDY45276 | Canola | cytosol | 12.25 | 17.01 |
| CDY21434 | Canola | cytosol | 3.0 | 16.9 |
| CDY21696 | Canola | cytosol | 13.5 | 15.84 |
| CDY52037 | Canola | cytosol | 11.25 | 15.1 |
| KRH12470 | Soybean | cytosol, endoplasmic reticulum, nucleus | 27.25 | 14.51 |
| CDY41093 | Canola | cytosol | 27.75 | 14.38 |
| KRG90981 | Soybean | nucleus | 28.0 | 14.04 |
| CDY65449 | Canola | cytosol | 13.75 | 13.89 |
| Solyc02g081960.2.1 | Tomato | cytosol, nucleus | 26.5 | 13.78 |
| Solyc04g005690.2.1 | Tomato | cytosol, nucleus | 26.0 | 13.54 |
| KRH35776 | Soybean | cytosol | 26.5 | 13.23 |
| PGSC0003DMT400018892 | Potato | cytosol | 26.5 | 13.22 |
| KRH36511 | Soybean | cytosol | 26.5 | 13.15 |
| TraesCS3B01G212000.1 | Wheat | cytosol | 19.0 | 13.15 |
| PGSC0003DMT400007349 | Potato | cytosol | 26.25 | 13.08 |
| VIT_01s0011g02040.t01 | Wine grape | cytosol | 26.5 | 13.02 |
| GSMUA_Achr3P03970_001 | Banana | cytosol | 25.25 | 12.9 |
| CDX89548 | Canola | cytosol | 5.25 | 12.5 |
| CDX89545 | Canola | cytosol | 5.25 | 12.5 |
| CDY58090 | Canola | cytosol | 16.25 | 12.45 |
| CDY38929 | Canola | cytosol | 5.25 | 12.43 |
| CDX83169 | Canola | plasma membrane | 3.25 | 12.38 |
| GSMUA_Achr9P12650_001 | Banana | cytosol | 24.5 | 12.14 |
| CDY44531 | Canola | cytosol | 16.5 | 11.85 |
| Os02t0245000-01 | Rice | cytosol | 22.75 | 11.49 |
| TraesCS3B01G211900.1 | Wheat | cytosol | 22.0 | 11.47 |
| EES00535 | Sorghum | cytosol | 22.5 | 11.21 |
| Zm00001d008293_P001 | Maize | cytosol | 22.25 | 11.04 |
| Zm00001d040343_P003 | Maize | cytosol | 22.25 | 11.03 |
| TraesCS3A01G503600.1 | Wheat | cytosol | 21.25 | 10.75 |
| TraesCS3D01G510100.1 | Wheat | cytosol | 21.25 | 10.71 |
| CDY72308 | Canola | cytosol | 17.0 | 10.41 |
| CDX71844 | Canola | cytosol, golgi, plasma membrane | 5.25 | 10.4 |
| HORVU3Hr1G110920.1 | Barley | cytosol | 21.25 | 10.38 |
| TraesCS3B01G566900.1 | Wheat | cytosol | 21.25 | 10.27 |
| CDY62788 | Canola | cytosol | 3.0 | 10.17 |
| CDY09657 | Canola | cytosol, nucleus, plastid | 10.75 | 9.43 |
| CDY09653 | Canola | nucleus | 10.25 | 8.38 |
| AT1G18050.1 | Thale cress | nucleus | 3.5 | 6.25 |
| KXG32223 | Sorghum | nucleus, plastid | 2.25 | 4.71 |
Protein Annotations
| Gene3D:1.10.10.790 | MapMan:35.2 | GO:A0A078HMU0 | UniProt:A0A078HMU0 | EnsemblPlants:CDY38128 | ProteinID:CDY38128 |
| ProteinID:CDY38128.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0006139 |
| GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00065411001 | InterPro:IPR000061 |
| InterPro:IPR035967 | PFAM:PF01805 | PFscan:PS50128 | PANTHER:PTHR15316 | PANTHER:PTHR15316:SF1 | SMART:SM00648 |
| SUPFAM:SSF109905 | InterPro:SWAP/Surp_sf | InterPro:Surp | UniParc:UPI0004EDD3D9 | SEG:seg | : |
Description
BnaC02g06450DBnaC02g06450D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HMU0]
Coordinates
chrLK032416:+:264803..266005
Molecular Weight (calculated)
45662.0 Da
IEP (calculated)
7.548
GRAVY (calculated)
-0.303
Length
400 amino acids
Sequence
(BLAST)
(BLAST)
001: MSASYQNLDG AQPDDAEARR RHRFQSSFKF PEKGITVREL GVIMLTALFE ERYGENFRRG LRRRVVMNTQ FGFMVFGDRR HNFYCGFLSA YSGVLRPCKR
101: MKKSDACTDT VLEVFFEILQ SQEEGEGIEL HDFVGVVDSF AHVEDEQYSV VVPAPVHVLM NMIPRTLRLP DTLLLPPVKS SSIHDPAPRR PHDLASPTRR
201: YTLREDCIIK VTAQFVARYG TKFTRALARR VAETTQFEFM NPTSGRSRFY TWYVERLGEV LRPCEKRDAC MNTVLEGFFS CLDRLQQEEE EEAVGVSLHG
301: FVDVVDCFAS MDHVLNQRIV PPGSQVHLGA YGQPLMGMMQ RAPPLGVMSL PPPLPLPEQP EPKRRKFDVS ALAPEDRLHN FQGWSTIKVF VPNIGEVVIR
101: MKKSDACTDT VLEVFFEILQ SQEEGEGIEL HDFVGVVDSF AHVEDEQYSV VVPAPVHVLM NMIPRTLRLP DTLLLPPVKS SSIHDPAPRR PHDLASPTRR
201: YTLREDCIIK VTAQFVARYG TKFTRALARR VAETTQFEFM NPTSGRSRFY TWYVERLGEV LRPCEKRDAC MNTVLEGFFS CLDRLQQEEE EEAVGVSLHG
301: FVDVVDCFAS MDHVLNQRIV PPGSQVHLGA YGQPLMGMMQ RAPPLGVMSL PPPLPLPEQP EPKRRKFDVS ALAPEDRLHN FQGWSTIKVF VPNIGEVVIR
001: MVDLFDFVGG GNYSAAMPPP ERLSVMIMNR VAQTQPDMVL QLPLGSQLTI PAKGITLKEL GVMKLTAQSS VRYGFDFWCG LWKRVYMNPL FQFLNPSDSR
101: SDFYNGFTAA YSRVLKPSKK LKKFDACTAT VLEGFFHRLH LFKLEEGVET AMIDLHGFVY GVDCFAHMAD DNYSAIMDPP ERPSMMINQL TQIQRNAPAP
201: HEKCLKRSYN FPYAFGGGIS LKELDLMKKV VMKPQFKFME PTNSVFGLYN VVVDAYSRVV KPSDDAYASM GMMQTARPEE PEAKRQKFDE SALNPEGAVR
301: RRHSRWQ
101: SDFYNGFTAA YSRVLKPSKK LKKFDACTAT VLEGFFHRLH LFKLEEGVET AMIDLHGFVY GVDCFAHMAD DNYSAIMDPP ERPSMMINQL TQIQRNAPAP
201: HEKCLKRSYN FPYAFGGGIS LKELDLMKKV VMKPQFKFME PTNSVFGLYN VVVDAYSRVV KPSDDAYASM GMMQTARPEE PEAKRQKFDE SALNPEGAVR
301: RRHSRWQ
Arabidopsis Description
SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9SMU9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.