Factsheet for Os02t0245000-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G212000.1	Wheat	cytosol	59.34	81.31
EES00535	Sorghum	cytosol	81.19	80.07
Zm00001d008293_P001	Maize	cytosol	80.68	79.28
Zm00001d040343_P003	Maize	cytosol	80.3	78.81
TraesCS3B01G211900.1	Wheat	cytosol	75.63	78.1
TraesCS3D01G510100.1	Wheat	cytosol	77.78	77.58
TraesCS3A01G503600.1	Wheat	cytosol	77.27	77.37
HORVU3Hr1G110920.1	Barley	cytosol	77.15	74.6
TraesCS3B01G566900.1	Wheat	cytosol	77.4	74.03
GSMUA_Achr3P03970_001	Banana	cytosol	62.12	62.84
GSMUA_Achr9P12650_001	Banana	cytosol	63.38	62.21
KRG90981	Soybean	nucleus	62.37	61.9
Solyc04g005690.2.1	Tomato	cytosol, nucleus	59.72	61.59
KRH12470	Soybean	cytosol, endoplasmic reticulum, nucleus	58.33	61.52
Solyc02g081960.2.1	Tomato	cytosol, nucleus	59.6	61.38
KRH35776	Soybean	cytosol	61.49	60.8
VIT_01s0011g02040.t01	Wine grape	cytosol	62.37	60.69
KRH36511	Soybean	cytosol	61.62	60.55
PGSC0003DMT400007349	Potato	cytosol	61.36	60.52
CDY41093	Canola	cytosol	58.46	59.97
PGSC0003DMT400018892	Potato	cytosol	60.23	59.48
CDX84020	Canola	nucleus	16.04	59.35
Bra016688.1-P	Field mustard	cytosol	51.77	59.25
AT1G14650.1	Thale cress	cytosol	56.94	57.45
Bra026198.1-P	Field mustard	cytosol, plastid	13.01	55.98
CDY45277	Canola	cytosol, plastid	12.75	54.59
CDY52036	Canola	cytosol, plastid	12.75	54.3
CDY45276	Canola	cytosol	19.19	52.78
CDY52037	Canola	cytosol	19.82	52.68
AT1G14640.1	Thale cress	cytosol	48.74	52.52
CDX84019	Canola	cytosol	12.37	52.41
AT5G06890.1	Thale cress	cytosol	4.04	48.48
KXG32223	Sorghum	nucleus, plastid	10.61	43.98
CDY21434	Canola	cytosol	3.66	40.85
Bra000608.1-P	Field mustard	cytosol	3.66	40.85
CDX89548	Canola	cytosol	8.59	40.48
CDX89545	Canola	cytosol	8.33	39.29
CDY38929	Canola	cytosol	8.33	39.05
CDY62788	Canola	cytosol	5.81	38.98
Bra032181.1-P	Field mustard	cytosol	8.96	32.87
CDY71524	Canola	cytosol	11.62	32.51
CDX83169	Canola	plasma membrane	4.17	31.43
AT5G12280.1	Thale cress	cytosol	15.91	30.07
CDY65449	Canola	cytosol	14.9	29.8
CDY21696	Canola	cytosol	11.36	26.39
CDY09657	Canola	cytosol, nucleus, plastid	14.65	25.44
Bra031050.1-P	Field mustard	cytosol	12.25	24.37
AT3G49130.1	Thale cress	cytosol	9.34	24.1
CDY09653	Canola	nucleus	14.77	23.93
AT3G27600.1	Thale cress	cytosol	9.22	23.32
Bra023557.1-P	Field mustard	mitochondrion	6.94	23.11
CDY38128	Canola	cytosol	11.49	22.75
CDY69291	Canola	cytosol, golgi	4.67	22.29
CDX81896	Canola	cytosol	6.06	20.78
CDY58992	Canola	cytosol	6.06	20.69
CDX71843	Canola	cytosol	5.56	20.18
AT4G16200.1	Thale cress	nucleus	7.32	20.14
CDY72308	Canola	cytosol	15.66	18.99
CDY58090	Canola	cytosol	11.24	17.05
Bra007503.1-P	Field mustard	cytosol	11.11	16.83
CDY44531	Canola	cytosol	11.62	16.52
CDY38126	Canola	cytosol	16.79	16.14
AT5G06520.1	Thale cress	cytosol	12.37	14.43
CDX71844	Canola	cytosol, golgi, plasma membrane	3.66	14.36
AT1G18050.1	Thale cress	nucleus	2.78	9.82

Protein Annotations

Gene3D:1.10.10.790	MapMan:16.4.1.2.3.1	Gene3D:3.10.20.90	EntrezGene:4328860	ProteinID:BAD27734.1	ProteinID:BAF08332.1
ProteinID:BAS77862.1	ncoils:Coil	ProteinID:EAZ22394.1	GO:GO:0000381	GO:GO:0000389	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005686	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0071004	GO:GO:0071013	InterPro:IPR000061
InterPro:IPR000626	InterPro:IPR035967	EnsemblPlantsGene:Os02g0245000	EnsemblPlants:Os02t0245000-01	PFAM:PF00240	PFAM:PF01805
PFAM:PF12230	PFscan:PS50053	PFscan:PS50128	PANTHER:PTHR15316	PANTHER:PTHR15316:SF1	UniProt:Q6EUD5
InterPro:SF3A1	SMART:SM00213	SMART:SM00648	SUPFAM:SSF109905	SUPFAM:SSF54236	InterPro:SWAP/Surp_sf
InterPro:Surp	UniParc:UPI00003CE4D1	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	RefSeq:XP_015624653.1	RefSeq:XP_015624654.1
RefSeq:XP_015624655.1	RefSeq:XP_015624656.1	RefSeq:XP_015624657.1	SEG:seg	:	:

Description

Ubiquitin domain containing protein. (Os02t0245000-01);Similar to predicted protein. (Os02t0245000-02)

Coordinates

chr2:+:8197017..8199726

Molecular Weight (calculated)

86967.0 Da

IEP (calculated)

4.841

GRAVY (calculated)

-0.599

Length

792 amino acids

Sequence
(BLAST)

001: MGAAILPLPA PDGDGDSHPQ QPPPPPPGGG AKPEPPPTVA THTRPLGIIH PPPDIRVIIE KTATFVSKNG PEFERRIISH NAGNAKFNFL QPSDPYHAYY
101: QHRVSELAAA PPSAAASAAD AAPEPDESGA APPPADSAAA PTVDGEAAKA DHSAPFRVPP PTKVLVPPKA ELYTVHLPEG ITGEELDIIK LTAQFVARNG
201: KSFLTSLAQR ESTNPQFHFI RPTHSMFTFF TKLTDTYSRV LNPVEGMPAL LKDLQDGAKD LTTVLERCLN RLEWDRSQEQ ARQQAEDEIE QERMQMQMID
301: WHDFVVVETI EFADDECEGL PVPLTLEELK RRKRIEDLGE EEAAMELAEP AKDVEMEMDE EEIQLVEEGM RAARLEENEG GVQVKLAGDE EPPMRIVKNY
401: KRPEERIPAE RDPTKFVVSP ITGELIPISE MEEHMRISLI DPKYKEQKER MLAKIKETTL APDDEISRNI VGLARTRPDI FGTTEEEVSN AVKAEIEKKK
501: DEQPKQVIWD GHSGSIGRTA TQALSMGGEE QVDASNVPGP APLPRPPMPL LRPPQPLPLV NVPRFQPSAM PYPPHQQPHL MQGVPHMMPT MHPPPPPPIP
601: GQPQVIRMPG SMGPMPTNIP PPPPGQNPYM PGPPRPYSMP PPPHMPTMAT MVNPIGIPQP PPPLPPQPPA EEQPPQPDEP EPKRLRTDDA SLIPAEQFLA
701: QHPGPAHISV SVPNLDEGNL RGQVLEIGVQ SLSDTVGSLK EQIAGELQLP ANKQKLSVRT SFLKDNLTLA YYNIGPGVVI NLTLRERGGR KK

Best Arabidopsis Sequence Match ( AT1G14650.1 )
(BLAST)

001: MFSSMQILPL EAPPTDGKLG PLPPSQLTDQ EVEERELQAE QNNSNLAPPA AVATHTRTIG IIHPPPDIRT IVEKTAQFVS KNGLEFEKRI IVSNEKNAKF
101: NFLKSSDPYH AFYQHKLTEY RAQNKDGAQG TDDSDGTTDP QLDTGAADES EAGDTQPDLQ AQFRIPSKPL EAPEPEKYTV RLPEGITGEE LDIIKLTAQF
201: VARNGKSFLT GLSNRENNNP QFHFMKPTHS MFTFFTSLVD AYSEVLMPPK DLKEKLRKSA ADLTTVLERC LHRLEWDRSQ EQQKKKEEDE KELERVQMAM
301: IDWHDFVVVE SIDFADEEDE ELPPPMTLDE VIRRSKASAM EEDEIVEPGK EVEMEMDEEE VKLVAEGMRA ANLEENVKIE NVHDEEAPMR IVKNWKRPED
401: RIPTERDPTK VVISPITGEL IPINEMSEHM RISLIDPKFK EQKDRMFAKI RETTLAQDDE IAKNIVGLAR LRPDIFGTTE EEVSNAVKAE IEKKKDEQPK
501: QVIWDGHTGS IGRTANQALS QNANGEEQGD GVYGDPNSFP GPAALPPPRP GVPIVRPLPP PPNLALNLPR PPPSAQYPGA PRPLGVPMMQ PMHQQHQLTM
601: PGPPGHPQMM MNRPPQMQPG MHVPPPPGSQ FAHHMQIPRP YGQLPPSAMG MMQPPPMPGM APPPPPEEAP PPLPEEPEAK RQKFDESALV PEDQFLAQHP
701: GPATIRVSKP NENDGQFMEI TVQSLSENVG SLKEKIAGEI QIPANKQKLS GKAGFLKDNM SLAHYNVGAG EILTLSLRER GGRKR

Arabidopsis Description

Probable splicing factor 3A subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXF1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.