Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G06890.1 | Thale cress | cytosol | 11.93 | 75.76 |
| AT1G14650.1 | Thale cress | cytosol | 35.8 | 19.11 |
| AT3G27600.1 | Thale cress | cytosol | 14.08 | 18.85 |
| Solyc04g005690.2.1 | Tomato | cytosol, nucleus | 34.13 | 18.62 |
| Solyc02g081960.2.1 | Tomato | cytosol, nucleus | 34.13 | 18.6 |
| VIT_01s0011g02040.t01 | Wine grape | cytosol | 35.8 | 18.43 |
| KRG90981 | Soybean | nucleus | 35.08 | 18.42 |
| PGSC0003DMT400007349 | Potato | cytosol | 35.08 | 18.31 |
| KRH36511 | Soybean | cytosol | 35.08 | 18.24 |
| KRH35776 | Soybean | cytosol | 34.84 | 18.23 |
| PGSC0003DMT400018892 | Potato | cytosol | 34.61 | 18.08 |
| GSMUA_Achr3P03970_001 | Banana | cytosol | 32.94 | 17.62 |
| KRH12470 | Soybean | cytosol, endoplasmic reticulum, nucleus | 31.5 | 17.58 |
| CDY69291 | Canola | cytosol, golgi | 6.92 | 17.47 |
| AT3G49130.1 | Thale cress | cytosol | 12.65 | 17.26 |
| GSMUA_Achr9P12650_001 | Banana | cytosol | 32.94 | 17.1 |
| CDX71843 | Canola | cytosol | 8.83 | 16.97 |
| AT1G14640.1 | Thale cress | cytosol | 29.12 | 16.6 |
| TraesCS3B01G212000.1 | Wheat | cytosol | 22.43 | 16.26 |
| EES00535 | Sorghum | cytosol | 31.03 | 16.19 |
| Zm00001d040343_P003 | Maize | cytosol | 30.79 | 15.99 |
| Os02t0245000-01 | Rice | cytosol | 30.07 | 15.91 |
| Zm00001d008293_P001 | Maize | cytosol | 30.31 | 15.76 |
| TraesCS3B01G211900.1 | Wheat | cytosol | 28.4 | 15.52 |
| TraesCS3D01G510100.1 | Wheat | cytosol | 29.12 | 15.37 |
| TraesCS3A01G503600.1 | Wheat | cytosol | 28.88 | 15.3 |
| KXG32223 | Sorghum | nucleus, plastid | 6.92 | 15.18 |
| TraesCS3B01G566900.1 | Wheat | cytosol | 29.83 | 15.1 |
| HORVU3Hr1G110920.1 | Barley | cytosol | 29.36 | 15.02 |
| AT4G16200.1 | Thale cress | nucleus | 9.31 | 13.54 |
| AT5G06520.1 | Thale cress | cytosol | 17.9 | 11.05 |
| AT1G18050.1 | Thale cress | nucleus | 3.82 | 7.14 |
Protein Annotations
| Gene3D:1.10.10.790 | Gene3D:3.10.20.90 | MapMan:35.1 | EntrezGene:831103 | ProteinID:AED91786.1 | ArrayExpress:AT5G12280 |
| EnsemblPlantsGene:AT5G12280 | RefSeq:AT5G12280 | TAIR:AT5G12280 | RefSeq:AT5G12280-TAIR-G | EnsemblPlants:AT5G12280.1 | TAIR:AT5G12280.1 |
| ProteinID:CAC42889.1 | GO:GO:0000381 | GO:GO:0000389 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005686 | GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0071004 | GO:GO:0071013 | InterPro:IPR000061 | InterPro:IPR000626 | InterPro:IPR035967 |
| RefSeq:NP_568261.1 | PFAM:PF00240 | PFAM:PF01805 | PO:PO:0000293 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 | PO:PO:0025022 |
| PO:PO:0025281 | PFscan:PS50053 | PFscan:PS50128 | PANTHER:PTHR15316 | PANTHER:PTHR15316:SF1 | UniProt:Q94CL4 |
| SMART:SM00213 | SMART:SM00648 | SUPFAM:SSF109905 | SUPFAM:SSF54236 | InterPro:SWAP/Surp_sf | InterPro:Surp |
| UniParc:UPI000009DDE0 | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_dom | : | : | : |
Description
SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q94CL4]
Coordinates
chr5:-:3972014..3973636
Molecular Weight (calculated)
47284.6 Da
IEP (calculated)
6.338
GRAVY (calculated)
-0.418
Length
419 amino acids
Sequence
(BLAST)
(BLAST)
001: MVGTLSPDTP DTQFISLCYK LQIVEVVRSP LFSTSRPGGS RGRAMRSRLR LHKPIILGQM KFGESDFDVS YDLIFMLEKD NSNEAPAEPP REMRIHMDKI
101: ARVVARKGLR IERKIMNVSE YLAKNQDEGA QEPEAPATLK GDAQHYRRPF LLSDPAPKFP DYVLPEGYTI EDVDTIFLTA QIVGRYGEEF WLDLIKEVDN
201: KPQFEFLKPA DSKFDYFNRL SVVASEGLKR SEKLTSSRMA IVSKAFFYHL RRQNEKRELT HKEGAAKACT LFGALYAFVG PDGCFADIKD EDLPLLQHPS
301: AIKNILTKLQ PRMPPLGGES EEPEFDESVL VPEDQFLAQH PGSSTIMVSV PDPDDWKVVK ITVQSLSENV ASLKEKISGE IQFPTNKQKL RGKAGFLKDN
401: TSLAHYNVGA GEILTLSWW
101: ARVVARKGLR IERKIMNVSE YLAKNQDEGA QEPEAPATLK GDAQHYRRPF LLSDPAPKFP DYVLPEGYTI EDVDTIFLTA QIVGRYGEEF WLDLIKEVDN
201: KPQFEFLKPA DSKFDYFNRL SVVASEGLKR SEKLTSSRMA IVSKAFFYHL RRQNEKRELT HKEGAAKACT LFGALYAFVG PDGCFADIKD EDLPLLQHPS
301: AIKNILTKLQ PRMPPLGGES EEPEFDESVL VPEDQFLAQH PGSSTIMVSV PDPDDWKVVK ITVQSLSENV ASLKEKISGE IQFPTNKQKL RGKAGFLKDN
401: TSLAHYNVGA GEILTLSWW
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.