Factsheet for AT4G16200.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG32223	Sorghum	nucleus, plastid	11.81	17.8
AT5G06890.1	Thale cress	cytosol	3.82	16.67
AT5G12280.1	Thale cress	cytosol	13.54	9.31
AT1G14650.1	Thale cress	cytosol	22.92	8.41
Solyc04g005690.2.1	Tomato	cytosol, nucleus	21.18	7.94
Solyc02g081960.2.1	Tomato	cytosol, nucleus	21.18	7.93
GSMUA_Achr3P03970_001	Banana	cytosol	21.53	7.92
KRH35776	Soybean	cytosol	21.88	7.87
VIT_01s0011g02040.t01	Wine grape	cytosol	22.22	7.86
KRH36511	Soybean	cytosol	21.88	7.82
KRG90981	Soybean	nucleus	21.53	7.77
KRH12470	Soybean	cytosol, endoplasmic reticulum, nucleus	20.14	7.72
GSMUA_Achr9P12650_001	Banana	cytosol	21.53	7.68
PGSC0003DMT400018892	Potato	cytosol	21.18	7.61
PGSC0003DMT400007349	Potato	cytosol	21.18	7.6
AT3G27600.1	Thale cress	cytosol	7.99	7.35
Os02t0245000-01	Rice	cytosol	20.14	7.32
TraesCS3B01G211900.1	Wheat	cytosol	19.44	7.3
Zm00001d008293_P001	Maize	cytosol	19.79	7.07
TraesCS3A01G503600.1	Wheat	cytosol	19.1	6.95
Zm00001d040343_P003	Maize	cytosol	19.44	6.94
TraesCS3D01G510100.1	Wheat	cytosol	19.1	6.93
EES00535	Sorghum	cytosol	19.1	6.85
TraesCS3B01G566900.1	Wheat	cytosol	19.1	6.64
HORVU3Hr1G110920.1	Barley	cytosol	18.75	6.59
AT1G14640.1	Thale cress	cytosol	15.97	6.26
AT3G49130.1	Thale cress	cytosol	4.17	3.91
TraesCS3B01G212000.1	Wheat	cytosol	7.64	3.81
AT5G06520.1	Thale cress	cytosol	7.29	3.09
AT1G18050.1	Thale cress	nucleus	2.08	2.68

Protein Annotations

Gene3D:1.10.10.790	MapMan:35.1	EntrezGene:827313	ProteinID:AEE83715.1	ArrayExpress:AT4G16200	EnsemblPlantsGene:AT4G16200
RefSeq:AT4G16200	TAIR:AT4G16200	RefSeq:AT4G16200-TAIR-G	EnsemblPlants:AT4G16200.1	TAIR:AT4G16200.1	Unigene:At.50346
ProteinID:CAB10399.1	ProteinID:CAB78662.1	GO:GO:0000381	GO:GO:0000389	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005686	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016043	GO:GO:0071004	GO:GO:0071013	InterPro:IPR000061	InterPro:IPR035967	RefSeq:NP_193355.1
UniProt:O23467	PFAM:PF01805	PFscan:PS50128	PANTHER:PTHR15316	PANTHER:PTHR15316:SF1	SMART:SM00648
SUPFAM:SSF109905	InterPro:SWAP/Surp_sf	InterPro:Surp	UniParc:UPI00000A8531	:	:

Description

SWAP (Suppressor-of-White-APricot)/surp domain-containing protein [Source:UniProtKB/TrEMBL;Acc:O23467]

Coordinates

chr4:+:9175649..9176565

Molecular Weight (calculated)

33213.2 Da

IEP (calculated)

4.887

GRAVY (calculated)

-0.463

Length

288 amino acids

Sequence
(BLAST)

001: MSTSTLQSEQ SMEIITPPAD IGTRTLVDKA AQFVSKKGLE FETKIIDSYP TDAKFNFLRS TADPCHTYYK HKLAEYSSQN QDGATDESDI KIFHAPPNVT
101: TTAIVETTSC LVSQFGSEFE MMVKDSNTDD ARFNFLKSSE DPYNVLYKQK LDEYSLDPRD AYYQHKLAES ISKYHREATP KLVLPNLLQF RLVKEMTFEE
201: LDTVKVTAQF VAWYGDDFRG FLMERVMTEP QFEFMKATDY RFSFYNEFVV AYSQVLNPPK YLKDKLRGRA AYTVIGHLLI TMSEEEIS

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.