Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P03970_001 | Banana | cytosol | 78.56 | 80.97 |
| VIT_01s0011g02040.t01 | Wine grape | cytosol | 70.76 | 70.15 |
| Solyc02g081960.2.1 | Tomato | cytosol, nucleus | 66.67 | 69.96 |
| KRH35776 | Soybean | cytosol | 69.39 | 69.91 |
| KRH12470 | Soybean | cytosol, endoplasmic reticulum, nucleus | 64.81 | 69.64 |
| Solyc04g005690.2.1 | Tomato | cytosol, nucleus | 66.17 | 69.53 |
| KRH36511 | Soybean | cytosol | 69.27 | 69.35 |
| PGSC0003DMT400007349 | Potato | cytosol | 68.77 | 69.12 |
| PGSC0003DMT400018892 | Potato | cytosol | 68.53 | 68.95 |
| KRG90981 | Soybean | nucleus | 67.91 | 68.67 |
| Bra016688.1-P | Field mustard | cytosol | 56.01 | 65.32 |
| CDY41093 | Canola | cytosol | 61.46 | 64.25 |
| CDY52036 | Canola | cytosol, plastid | 14.75 | 63.98 |
| TraesCS3B01G212000.1 | Wheat | cytosol | 45.6 | 63.67 |
| Os02t0245000-01 | Rice | cytosol | 62.21 | 63.38 |
| CDY45277 | Canola | cytosol, plastid | 14.5 | 63.24 |
| Zm00001d008293_P001 | Maize | cytosol | 62.95 | 63.03 |
| AT1G14650.1 | Thale cress | cytosol | 61.21 | 62.93 |
| TraesCS3D01G510100.1 | Wheat | cytosol | 61.59 | 62.59 |
| EES00535 | Sorghum | cytosol | 62.08 | 62.39 |
| Zm00001d040343_P003 | Maize | cytosol | 62.33 | 62.33 |
| TraesCS3A01G503600.1 | Wheat | cytosol | 60.97 | 62.2 |
| Bra026198.1-P | Field mustard | cytosol, plastid | 14.13 | 61.96 |
| CDX84020 | Canola | nucleus | 16.36 | 61.68 |
| CDX84019 | Canola | cytosol | 14.25 | 61.5 |
| CDY45276 | Canola | cytosol | 21.81 | 61.11 |
| TraesCS3B01G211900.1 | Wheat | cytosol | 57.87 | 60.89 |
| CDY52037 | Canola | cytosol | 22.18 | 60.07 |
| TraesCS3B01G566900.1 | Wheat | cytosol | 61.34 | 59.78 |
| HORVU3Hr1G110920.1 | Barley | cytosol | 60.59 | 59.71 |
| AT5G06890.1 | Thale cress | cytosol | 4.71 | 57.58 |
| AT1G14640.1 | Thale cress | cytosol | 51.67 | 56.73 |
| Bra000608.1-P | Field mustard | cytosol | 3.72 | 42.25 |
| CDY21434 | Canola | cytosol | 3.72 | 42.25 |
| CDY62788 | Canola | cytosol | 5.45 | 37.29 |
| KXG32223 | Sorghum | nucleus, plastid | 8.55 | 36.13 |
| CDX89548 | Canola | cytosol | 7.43 | 35.71 |
| CDX89545 | Canola | cytosol | 7.31 | 35.12 |
| CDY71524 | Canola | cytosol | 12.14 | 34.63 |
| CDY38929 | Canola | cytosol | 7.06 | 33.73 |
| CDX83169 | Canola | plasma membrane | 4.34 | 33.33 |
| AT5G12280.1 | Thale cress | cytosol | 17.1 | 32.94 |
| CDY65449 | Canola | cytosol | 15.24 | 31.06 |
| Bra032181.1-P | Field mustard | cytosol | 8.18 | 30.56 |
| AT3G49130.1 | Thale cress | cytosol | 10.66 | 28.01 |
| CDY21696 | Canola | cytosol | 11.77 | 27.86 |
| Bra023557.1-P | Field mustard | mitochondrion | 7.93 | 26.89 |
| CDY09657 | Canola | cytosol, nucleus, plastid | 14.37 | 25.44 |
| AT3G27600.1 | Thale cress | cytosol | 9.79 | 25.24 |
| Bra031050.1-P | Field mustard | cytosol | 12.39 | 25.13 |
| CDY38128 | Canola | cytosol | 12.14 | 24.5 |
| CDY69291 | Canola | cytosol, golgi | 4.83 | 23.49 |
| CDY09653 | Canola | nucleus | 14.13 | 23.31 |
| CDX81896 | Canola | cytosol | 6.32 | 22.08 |
| CDY58992 | Canola | cytosol | 6.32 | 21.98 |
| AT4G16200.1 | Thale cress | nucleus | 7.68 | 21.53 |
| CDX71843 | Canola | cytosol | 5.2 | 19.27 |
| CDY72308 | Canola | cytosol | 15.37 | 18.99 |
| CDY58090 | Canola | cytosol | 12.27 | 18.97 |
| Bra007503.1-P | Field mustard | cytosol | 12.14 | 18.74 |
| CDY44531 | Canola | cytosol | 12.39 | 17.95 |
| CDY38126 | Canola | cytosol | 17.6 | 17.23 |
| CDX71844 | Canola | cytosol, golgi, plasma membrane | 4.21 | 16.83 |
| AT5G06520.1 | Thale cress | cytosol | 12.76 | 15.17 |
| AT1G18050.1 | Thale cress | nucleus | 2.73 | 9.82 |
Protein Annotations
| Gene3D:1.10.10.790 | MapMan:16.4.1.2.3.1 | Gene3D:3.10.20.90 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr9G12650_001 | EnsemblPlants:GSMUA_Achr9P12650_001 | EnsemblPlants:GSMUA_Achr9T12650_001 | InterPro:IPR000061 |
| InterPro:IPR000626 | InterPro:IPR035967 | UniProt:M0TZS4 | PFAM:PF00240 | PFAM:PF01805 | PFAM:PF12230 |
| PFscan:PS50053 | PFscan:PS50128 | PANTHER:PTHR15316 | PANTHER:PTHR15316:SF1 | InterPro:SF3A1 | SMART:SM00213 |
| SMART:SM00648 | SUPFAM:SSF109905 | SUPFAM:SSF54236 | InterPro:SWAP/Surp_sf | InterPro:Surp | UniParc:UPI00029530B1 |
| InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_dom | SEG:seg | : | : | : |
Description
Probable splicing factor 3A subunit 1 [Source:GMGC_GENE;Acc:GSMUA_Achr9G12650_001]
Coordinates
chr9:-:8229081..8233205
Molecular Weight (calculated)
88957.2 Da
IEP (calculated)
4.818
GRAVY (calculated)
-0.576
Length
807 amino acids
Sequence
(BLAST)
(BLAST)
001: MLAPILRLPA PPSDGNLGPT PPAQVSNDAP ANKPQEEKEQ PPPAPVATHT RTIGIIHPPP DIRVIIDKTA AFVAKNGPEF EKRILANNAG NNKFNFLTAL
101: DPYHAYYQHK VSEHRTLVQA ASQQPSGDSS QPLDSAPAPS DGLAAPAAAT APSDEATTKV DPGVQFRIPP NKVLEPPEAE QYTVRLPEGI TGEELDIIKL
201: TAQFVARNGK NFLTNLTSRE MSNPQFHFLK PTHSMFTFFT TLTDAYSRVL MPPTGLTEKL RKSTSDLTTV LERCLHRLEW ERSQEQARQK AEDEIEQERM
301: QMAMIDWHDF VVVETIEFVD DEDEELPVPM TLDEVIRRSK ISVLDEEEPM QTSEPGKEME MEMDEEEMQF VEEGMKAARL NENAMEAKAP GDEPEPPMRI
401: VKNWKRPEER IPAERDPTKF VISPITNELI SISEMAEHMR ISLIDPKYKE QKERMMAKIR ETTLAADDEI SKNIVGLART RPDIFGTTEE EVSNAVKAEI
501: EKKKDEQPKQ VIWDGHSGSI GRTATQALSQ SASGEEQTEA NNNDSWILPG PAPQPRPGVP LVRSLPPPPG LALNIPRFPP NTVPYSVPAA GGGLFPHPRP
601: GMISMIPSVR PAPSPILMPS SQQPVMMNQQ PLPQAISVNP PPPPGSQFTP LVLSRTFVPL PMPPPNMPMV PPPPPPQGMP PPPPPEEAPP LPDEPEPKRQ
701: RVDDVSLIPE DQFLARHPGS CRISVSVPSV DEGNLKGQLL EIAVQSLSET VGSLKEKIAA EVQLPANKQK LSGRAGFLKD NLTLAYYNIG PGETLTLALR
801: ERGGRKR
101: DPYHAYYQHK VSEHRTLVQA ASQQPSGDSS QPLDSAPAPS DGLAAPAAAT APSDEATTKV DPGVQFRIPP NKVLEPPEAE QYTVRLPEGI TGEELDIIKL
201: TAQFVARNGK NFLTNLTSRE MSNPQFHFLK PTHSMFTFFT TLTDAYSRVL MPPTGLTEKL RKSTSDLTTV LERCLHRLEW ERSQEQARQK AEDEIEQERM
301: QMAMIDWHDF VVVETIEFVD DEDEELPVPM TLDEVIRRSK ISVLDEEEPM QTSEPGKEME MEMDEEEMQF VEEGMKAARL NENAMEAKAP GDEPEPPMRI
401: VKNWKRPEER IPAERDPTKF VISPITNELI SISEMAEHMR ISLIDPKYKE QKERMMAKIR ETTLAADDEI SKNIVGLART RPDIFGTTEE EVSNAVKAEI
501: EKKKDEQPKQ VIWDGHSGSI GRTATQALSQ SASGEEQTEA NNNDSWILPG PAPQPRPGVP LVRSLPPPPG LALNIPRFPP NTVPYSVPAA GGGLFPHPRP
601: GMISMIPSVR PAPSPILMPS SQQPVMMNQQ PLPQAISVNP PPPPGSQFTP LVLSRTFVPL PMPPPNMPMV PPPPPPQGMP PPPPPEEAPP LPDEPEPKRQ
701: RVDDVSLIPE DQFLARHPGS CRISVSVPSV DEGNLKGQLL EIAVQSLSET VGSLKEKIAA EVQLPANKQK LSGRAGFLKD NLTLAYYNIG PGETLTLALR
801: ERGGRKR
001: MFSSMQILPL EAPPTDGKLG PLPPSQLTDQ EVEERELQAE QNNSNLAPPA AVATHTRTIG IIHPPPDIRT IVEKTAQFVS KNGLEFEKRI IVSNEKNAKF
101: NFLKSSDPYH AFYQHKLTEY RAQNKDGAQG TDDSDGTTDP QLDTGAADES EAGDTQPDLQ AQFRIPSKPL EAPEPEKYTV RLPEGITGEE LDIIKLTAQF
201: VARNGKSFLT GLSNRENNNP QFHFMKPTHS MFTFFTSLVD AYSEVLMPPK DLKEKLRKSA ADLTTVLERC LHRLEWDRSQ EQQKKKEEDE KELERVQMAM
301: IDWHDFVVVE SIDFADEEDE ELPPPMTLDE VIRRSKASAM EEDEIVEPGK EVEMEMDEEE VKLVAEGMRA ANLEENVKIE NVHDEEAPMR IVKNWKRPED
401: RIPTERDPTK VVISPITGEL IPINEMSEHM RISLIDPKFK EQKDRMFAKI RETTLAQDDE IAKNIVGLAR LRPDIFGTTE EEVSNAVKAE IEKKKDEQPK
501: QVIWDGHTGS IGRTANQALS QNANGEEQGD GVYGDPNSFP GPAALPPPRP GVPIVRPLPP PPNLALNLPR PPPSAQYPGA PRPLGVPMMQ PMHQQHQLTM
601: PGPPGHPQMM MNRPPQMQPG MHVPPPPGSQ FAHHMQIPRP YGQLPPSAMG MMQPPPMPGM APPPPPEEAP PPLPEEPEAK RQKFDESALV PEDQFLAQHP
701: GPATIRVSKP NENDGQFMEI TVQSLSENVG SLKEKIAGEI QIPANKQKLS GKAGFLKDNM SLAHYNVGAG EILTLSLRER GGRKR
101: NFLKSSDPYH AFYQHKLTEY RAQNKDGAQG TDDSDGTTDP QLDTGAADES EAGDTQPDLQ AQFRIPSKPL EAPEPEKYTV RLPEGITGEE LDIIKLTAQF
201: VARNGKSFLT GLSNRENNNP QFHFMKPTHS MFTFFTSLVD AYSEVLMPPK DLKEKLRKSA ADLTTVLERC LHRLEWDRSQ EQQKKKEEDE KELERVQMAM
301: IDWHDFVVVE SIDFADEEDE ELPPPMTLDE VIRRSKASAM EEDEIVEPGK EVEMEMDEEE VKLVAEGMRA ANLEENVKIE NVHDEEAPMR IVKNWKRPED
401: RIPTERDPTK VVISPITGEL IPINEMSEHM RISLIDPKFK EQKDRMFAKI RETTLAQDDE IAKNIVGLAR LRPDIFGTTE EEVSNAVKAE IEKKKDEQPK
501: QVIWDGHTGS IGRTANQALS QNANGEEQGD GVYGDPNSFP GPAALPPPRP GVPIVRPLPP PPNLALNLPR PPPSAQYPGA PRPLGVPMMQ PMHQQHQLTM
601: PGPPGHPQMM MNRPPQMQPG MHVPPPPGSQ FAHHMQIPRP YGQLPPSAMG MMQPPPMPGM APPPPPEEAP PPLPEEPEAK RQKFDESALV PEDQFLAQHP
701: GPATIRVSKP NENDGQFMEI TVQSLSENVG SLKEKIAGEI QIPANKQKLS GKAGFLKDNM SLAHYNVGAG EILTLSLRER GGRKR
Arabidopsis Description
Probable splicing factor 3A subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXF1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.