Factsheet for Bra000608.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21434	Canola	cytosol	100.0	100.0
CDX83169	Canola	plasma membrane	87.32	59.05
Bra032181.1-P	Field mustard	cytosol	25.35	8.33
Bra016688.1-P	Field mustard	cytosol	43.66	4.48
Solyc04g005690.2.1	Tomato	cytosol, nucleus	46.48	4.3
Bra031050.1-P	Field mustard	cytosol	23.94	4.27
VIT_01s0011g02040.t01	Wine grape	cytosol	47.89	4.18
Solyc02g081960.2.1	Tomato	cytosol, nucleus	45.07	4.16
TraesCS3B01G212000.1	Wheat	cytosol	33.8	4.15
PGSC0003DMT400007349	Potato	cytosol	46.48	4.11
AT1G14650.1	Thale cress	cytosol	45.07	4.08
KRG90981	Soybean	nucleus	45.07	4.01
KRH35776	Soybean	cytosol	45.07	4.0
KRH36511	Soybean	cytosol	45.07	3.97
GSMUA_Achr3P03970_001	Banana	cytosol	42.25	3.83
PGSC0003DMT400018892	Potato	cytosol	42.25	3.74
GSMUA_Achr9P12650_001	Banana	cytosol	42.25	3.72
Os02t0245000-01	Rice	cytosol	40.85	3.66
EES00535	Sorghum	cytosol	40.85	3.61
Zm00001d008293_P001	Maize	cytosol	40.85	3.6
Zm00001d040343_P003	Maize	cytosol	40.85	3.59
TraesCS3A01G503600.1	Wheat	cytosol	39.44	3.54
TraesCS3D01G510100.1	Wheat	cytosol	39.44	3.53
TraesCS3B01G211900.1	Wheat	cytosol	38.03	3.52
HORVU3Hr1G110920.1	Barley	cytosol	39.44	3.42
TraesCS3B01G566900.1	Wheat	cytosol	39.44	3.38
Bra023557.1-P	Field mustard	mitochondrion	11.27	3.36
Bra007503.1-P	Field mustard	cytosol	23.94	3.25
KRH12470	Soybean	cytosol, endoplasmic reticulum, nucleus	29.58	2.8
Bra026198.1-P	Field mustard	cytosol, plastid	5.63	2.17
KXG32223	Sorghum	nucleus, plastid	4.23	1.57

Protein Annotations

EnsemblPlants:Bra000608.1	EnsemblPlants:Bra000608.1-P	EnsemblPlantsGene:Bra000608	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
InterPro:IPR035967	InterPro:SWAP/Surp_sf	SUPFAM:SSF109905	UniParc:UPI0002540199	UniProt:M4C8T0	MapMan:35.2

Description

AT1G14650 (E=6e-009) | SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein

Coordinates

chrA03:+:12029298..12029615

Molecular Weight (calculated)

8036.8 Da

IEP (calculated)

4.629

GRAVY (calculated)

-0.031

Length

71 amino acids

Sequence
(BLAST)

1: MTPPEEDYTV ILPDGITDED LDTVNLTVRV VARKGKSFLV ELTRGEINNY PQSYSKNLIH ITLGVILLFK M

Best Arabidopsis Sequence Match ( AT1G14650.1 )
(BLAST)

001: MFSSMQILPL EAPPTDGKLG PLPPSQLTDQ EVEERELQAE QNNSNLAPPA AVATHTRTIG IIHPPPDIRT IVEKTAQFVS KNGLEFEKRI IVSNEKNAKF
101: NFLKSSDPYH AFYQHKLTEY RAQNKDGAQG TDDSDGTTDP QLDTGAADES EAGDTQPDLQ AQFRIPSKPL EAPEPEKYTV RLPEGITGEE LDIIKLTAQF
201: VARNGKSFLT GLSNRENNNP QFHFMKPTHS MFTFFTSLVD AYSEVLMPPK DLKEKLRKSA ADLTTVLERC LHRLEWDRSQ EQQKKKEEDE KELERVQMAM
301: IDWHDFVVVE SIDFADEEDE ELPPPMTLDE VIRRSKASAM EEDEIVEPGK EVEMEMDEEE VKLVAEGMRA ANLEENVKIE NVHDEEAPMR IVKNWKRPED
401: RIPTERDPTK VVISPITGEL IPINEMSEHM RISLIDPKFK EQKDRMFAKI RETTLAQDDE IAKNIVGLAR LRPDIFGTTE EEVSNAVKAE IEKKKDEQPK
501: QVIWDGHTGS IGRTANQALS QNANGEEQGD GVYGDPNSFP GPAALPPPRP GVPIVRPLPP PPNLALNLPR PPPSAQYPGA PRPLGVPMMQ PMHQQHQLTM
601: PGPPGHPQMM MNRPPQMQPG MHVPPPPGSQ FAHHMQIPRP YGQLPPSAMG MMQPPPMPGM APPPPPEEAP PPLPEEPEAK RQKFDESALV PEDQFLAQHP
701: GPATIRVSKP NENDGQFMEI TVQSLSENVG SLKEKIAGEI QIPANKQKLS GKAGFLKDNM SLAHYNVGAG EILTLSLRER GGRKR

Arabidopsis Description

Probable splicing factor 3A subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXF1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.