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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 2
  • mitochondrion 1
  • nucleus 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d040343_P003 Maize cytosol 95.16 95.04
EES00535 Sorghum cytosol 92.56 92.9
Os02t0245000-01 Rice cytosol 79.28 80.68
TraesCS3B01G212000.1 Wheat cytosol 56.95 79.41
TraesCS3D01G510100.1 Wheat cytosol 76.05 77.2
TraesCS3B01G211900.1 Wheat cytosol 73.45 77.18
TraesCS3A01G503600.1 Wheat cytosol 75.56 76.99
HORVU3Hr1G110920.1 Barley cytosol 75.81 74.6
TraesCS3B01G566900.1 Wheat cytosol 75.68 73.67
GSMUA_Achr3P03970_001 Banana cytosol 61.54 63.35
GSMUA_Achr9P12650_001 Banana cytosol 63.03 62.95
KRH35776 Soybean cytosol 61.29 61.67
KRH12470 Soybean cytosol, endoplasmic reticulum, nucleus 57.44 61.65
Solyc02g081960.2.1 Tomato cytosol, nucleus 58.81 61.64
Solyc04g005690.2.1 Tomato cytosol, nucleus 58.68 61.59
KRH36511 Soybean cytosol 61.29 61.29
KRG90981 Soybean nucleus 60.42 61.03
VIT_01s0011g02040.t01 Wine grape cytosol 61.54 60.93
PGSC0003DMT400007349 Potato cytosol 60.3 60.52
PGSC0003DMT400018892 Potato cytosol 59.31 59.6
CDX84020 Canola nucleus 15.76 59.35
Bra016688.1-P Field mustard cytosol 50.74 59.1
CDY41093 Canola cytosol 55.83 58.29
AT1G14650.1 Thale cress cytosol 56.2 57.71
Bra026198.1-P Field mustard cytosol, plastid 12.28 53.8
CDY52037 Canola cytosol 19.48 52.68
CDY45277 Canola cytosol, plastid 12.03 52.43
CDY45276 Canola cytosol 18.73 52.43
CDY52036 Canola cytosol, plastid 12.03 52.15
AT1G14640.1 Thale cress cytosol 47.15 51.7
CDX84019 Canola cytosol 11.54 49.73
AT5G06890.1 Thale cress cytosol 3.85 46.97
CDY21434 Canola cytosol 3.6 40.85
Bra000608.1-P Field mustard cytosol 3.6 40.85
CDY62788 Canola cytosol 5.58 38.14
CDX89545 Canola cytosol 7.69 36.9
CDX89548 Canola cytosol 7.69 36.9
CDY38929 Canola cytosol 7.57 36.09
CDY71524 Canola cytosol 11.41 32.51
Bra032181.1-P Field mustard cytosol 8.56 31.94
CDX83169 Canola plasma membrane 4.09 31.43
AT5G12280.1 Thale cress cytosol 15.76 30.31
CDY65449 Canola cytosol 14.52 29.55
CDY21696 Canola cytosol 11.17 26.39
CDY09657 Canola cytosol, nucleus, plastid 14.27 25.22
Bra023557.1-P Field mustard mitochondrion 7.44 25.21
AT3G49130.1 Thale cress cytosol 9.31 24.43
Bra031050.1-P Field mustard cytosol 12.03 24.37
AT3G27600.1 Thale cress cytosol 9.31 23.96
CDY09653 Canola nucleus 14.14 23.31
CDY38128 Canola cytosol 11.04 22.25
CDY69291 Canola cytosol, golgi 4.47 21.69
CDX81896 Canola cytosol 6.08 21.21
CDY58992 Canola cytosol 6.08 21.12
AT4G16200.1 Thale cress nucleus 7.07 19.79
CDX71843 Canola cytosol 5.33 19.72
CDY72308 Canola cytosol 15.38 18.99
CDY58090 Canola cytosol 11.79 18.2
Bra007503.1-P Field mustard cytosol 11.66 17.97
CDY44531 Canola cytosol 12.03 17.41
CDX71844 Canola cytosol, golgi, plasma membrane 4.09 16.34
CDY38126 Canola cytosol 16.38 16.02
AT5G06520.1 Thale cress cytosol 13.03 15.46
AT1G18050.1 Thale cress nucleus 2.73 9.82
Protein Annotations
Gene3D:1.10.10.790MapMan:16.4.1.2.3.1Gene3D:3.10.20.90ProteinID:AQK89403.1ProteinID:AQK89404.1ProteinID:AQK89405.1
ProteinID:AQK89406.1ProteinID:AQK89407.1ProteinID:AQK89408.1ncoils:CoilGO:GO:0003674GO:GO:0003676
GO:GO:0003723GO:GO:0005488GO:GO:0005515GO:GO:0006139GO:GO:0006396GO:GO:0008150
GO:GO:0008152GO:GO:0009987InterPro:IPR000061InterPro:IPR000626InterPro:IPR035967UniProt:K7USZ5
PFAM:PF00240PFAM:PF01805PFAM:PF12230PFscan:PS50053PFscan:PS50128PANTHER:PTHR15316
PANTHER:PTHR15316:SF1InterPro:SF3A1SMART:SM00213SMART:SM00648SUPFAM:SSF109905SUPFAM:SSF54236
InterPro:SWAP/Surp_sfInterPro:SurpUniParc:UPI000220A8A8InterPro:Ubiquitin-like_domsfInterPro:Ubiquitin_domEnsemblPlantsGene:Zm00001d008293
EnsemblPlants:Zm00001d008293_P001EnsemblPlants:Zm00001d008293_T001SEG:seg:::
Description
Probable splicing factor 3A subunit 1
Coordinates
chr8:-:4309481..4314254
Molecular Weight (calculated)
88149.2 Da
IEP (calculated)
4.867
GRAVY (calculated)
-0.574
Length
806 amino acids
Sequence
(BLAST)
001: MAAAMGNPIL TLPAPEGNGT GGGDADQQLQ QAPPKPPPPG AKTDPPATVA THTRTIGIIH PPPDIRVIIE KTATFVAKNG PEFERRIISL NQGNAKFNFL
101: QPSDPYHAYY QHRVSEIAAA PPGADGPSGA DTGAAPDESP ASAPADGAAA APVDGAAADA KADHSAPFRV GPPPKVLVPP KAELYTVRLP EGITGEELDI
201: IKLTAQFVAR NGKNFLTSLA QRESNNMQFH FIRPTHSMFP FFTALTDAYS RVLRPAEGVP ALLKELREGS KDLTTVLERC LNRLEWDRSQ EQARQQAEDE
301: VEQERMQMSM IDWHDFVVVE TIEFADDEYE GLPVPLTLEE LKRQKRMENL GEEEAMDLTE PSKEVEMEMD EEEMQLVEEG MRAARLEEND GAAQVSLPGD
401: DEAPMRIVKN YKRPEERIPA ERDPTKFVVS PITGELIPIS EMEEHMRISL IDPKYKEQKE RMLAKIKETT LAPDDEISRN IVGLARTRPD IFGTTEEEVS
501: NAVKAEIEKK KDEQPKQVIW DGHSGSIGRT ATHALSQPQG GEEQFDATNV DGRPVPGPAP LVRPGMPLPR PPQPLPLVNV PRFIAPPAPY SVPPPGSHMP
601: GVPHMMPHMH LPPQQIPGQP PMVRMPGQMV HMPTSIPPPP GQTQFMPGPP RTFAMPPSSH MPPMINPIGI PQPPAPPLPP QPPAEEQPPP PDEPEPKRQR
701: TDDASLIPAE QYLVQHPGPA SISVSVPNLD EGNLRGQILQ IPVQSLSDTV GSLKEQIAGE LQLPANKQKL SVRTSFLKDN LTLAYYNVGP GVVINLTLRE
801: RGGRKK
Best Arabidopsis Sequence Match ( AT1G14640.1 )
(BLAST)
001: MFNSMKILPL EAPPADGNLG PLPPSQLTDE EIKENEFQGE QNNSIQTPIA VATHTNPIGI IYPPPEIRKI VETTAQFVSQ NGLAFGNKVK TEKANNANFS
101: FLKSDNPYHG FYRYKVTEYS CHIRDGAQGT DVDDTEDPKL DDESDAKPDL QAQFRAPRKI LEAPEPEKYT VRLPEGIMEA ELDIIKHTAQ FVARNGQSFL
201: RELMRREVNN SQFQFMKPTH SMFTFFTSLV DAYSEVLMPP RDLKEKLRKS VADLTTVLER CLNRLEWDRF QEEEKNKEED EKEKERVQMV MIDWKDFAVV
301: ESIDFADEED KDLPMPMTLE EVIRRSKVSA MEEDEIVEPG KEVEMDMDEE EVKLVAEGMR AANLEEYVGS VEIEEEAPMR IVKNWKRPED RFLTERDSSK
401: VVISRITGEL IPITEMSEHM RISLIDPKFK EQKDRMFAKI RETTLAQDDE IAKNIVGLAR LRPDIFGTTE EEVSNAVKAD IEKKDEQPKQ VIWDGHTGSI
501: GRTANQALTQ NSNGEQGDGV YGDPNSFPGP AAFPPPRPGV PTVRPLPPPQ NLALNLPRPP PSVQYPGAPR PLGVPMMQPM YQQHQLSMSG PHGHPSMMMS
601: RPPQMQPVMR VPPPPGSQFS HMQVPQPYGQ LPPLSMGMMQ PPPMAEMPPP PPPGEAPPPL PEEPEPKRQK LDESALVPED QFLAQHPGPA TIRVSKPNEN
701: DGQVMEITVQ SLSENVGSLK EKIAGEMQIP ANKQK
Arabidopsis Description
SWAP (Suppressor-of-White-APricot)/surp domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4HW92]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.