Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Zm00001d040343_P003 | Maize | cytosol | 95.16 | 95.04 |
EES00535 | Sorghum | cytosol | 92.56 | 92.9 |
Os02t0245000-01 | Rice | cytosol | 79.28 | 80.68 |
TraesCS3B01G212000.1 | Wheat | cytosol | 56.95 | 79.41 |
TraesCS3D01G510100.1 | Wheat | cytosol | 76.05 | 77.2 |
TraesCS3B01G211900.1 | Wheat | cytosol | 73.45 | 77.18 |
TraesCS3A01G503600.1 | Wheat | cytosol | 75.56 | 76.99 |
HORVU3Hr1G110920.1 | Barley | cytosol | 75.81 | 74.6 |
TraesCS3B01G566900.1 | Wheat | cytosol | 75.68 | 73.67 |
GSMUA_Achr3P03970_001 | Banana | cytosol | 61.54 | 63.35 |
GSMUA_Achr9P12650_001 | Banana | cytosol | 63.03 | 62.95 |
KRH35776 | Soybean | cytosol | 61.29 | 61.67 |
KRH12470 | Soybean | cytosol, endoplasmic reticulum, nucleus | 57.44 | 61.65 |
Solyc02g081960.2.1 | Tomato | cytosol, nucleus | 58.81 | 61.64 |
Solyc04g005690.2.1 | Tomato | cytosol, nucleus | 58.68 | 61.59 |
KRH36511 | Soybean | cytosol | 61.29 | 61.29 |
KRG90981 | Soybean | nucleus | 60.42 | 61.03 |
VIT_01s0011g02040.t01 | Wine grape | cytosol | 61.54 | 60.93 |
PGSC0003DMT400007349 | Potato | cytosol | 60.3 | 60.52 |
PGSC0003DMT400018892 | Potato | cytosol | 59.31 | 59.6 |
CDX84020 | Canola | nucleus | 15.76 | 59.35 |
Bra016688.1-P | Field mustard | cytosol | 50.74 | 59.1 |
CDY41093 | Canola | cytosol | 55.83 | 58.29 |
AT1G14650.1 | Thale cress | cytosol | 56.2 | 57.71 |
Bra026198.1-P | Field mustard | cytosol, plastid | 12.28 | 53.8 |
CDY52037 | Canola | cytosol | 19.48 | 52.68 |
CDY45277 | Canola | cytosol, plastid | 12.03 | 52.43 |
CDY45276 | Canola | cytosol | 18.73 | 52.43 |
CDY52036 | Canola | cytosol, plastid | 12.03 | 52.15 |
AT1G14640.1 | Thale cress | cytosol | 47.15 | 51.7 |
CDX84019 | Canola | cytosol | 11.54 | 49.73 |
AT5G06890.1 | Thale cress | cytosol | 3.85 | 46.97 |
CDY21434 | Canola | cytosol | 3.6 | 40.85 |
Bra000608.1-P | Field mustard | cytosol | 3.6 | 40.85 |
CDY62788 | Canola | cytosol | 5.58 | 38.14 |
CDX89545 | Canola | cytosol | 7.69 | 36.9 |
CDX89548 | Canola | cytosol | 7.69 | 36.9 |
CDY38929 | Canola | cytosol | 7.57 | 36.09 |
CDY71524 | Canola | cytosol | 11.41 | 32.51 |
Bra032181.1-P | Field mustard | cytosol | 8.56 | 31.94 |
CDX83169 | Canola | plasma membrane | 4.09 | 31.43 |
AT5G12280.1 | Thale cress | cytosol | 15.76 | 30.31 |
CDY65449 | Canola | cytosol | 14.52 | 29.55 |
CDY21696 | Canola | cytosol | 11.17 | 26.39 |
CDY09657 | Canola | cytosol, nucleus, plastid | 14.27 | 25.22 |
Bra023557.1-P | Field mustard | mitochondrion | 7.44 | 25.21 |
AT3G49130.1 | Thale cress | cytosol | 9.31 | 24.43 |
Bra031050.1-P | Field mustard | cytosol | 12.03 | 24.37 |
AT3G27600.1 | Thale cress | cytosol | 9.31 | 23.96 |
CDY09653 | Canola | nucleus | 14.14 | 23.31 |
CDY38128 | Canola | cytosol | 11.04 | 22.25 |
CDY69291 | Canola | cytosol, golgi | 4.47 | 21.69 |
CDX81896 | Canola | cytosol | 6.08 | 21.21 |
CDY58992 | Canola | cytosol | 6.08 | 21.12 |
AT4G16200.1 | Thale cress | nucleus | 7.07 | 19.79 |
CDX71843 | Canola | cytosol | 5.33 | 19.72 |
CDY72308 | Canola | cytosol | 15.38 | 18.99 |
CDY58090 | Canola | cytosol | 11.79 | 18.2 |
Bra007503.1-P | Field mustard | cytosol | 11.66 | 17.97 |
CDY44531 | Canola | cytosol | 12.03 | 17.41 |
CDX71844 | Canola | cytosol, golgi, plasma membrane | 4.09 | 16.34 |
CDY38126 | Canola | cytosol | 16.38 | 16.02 |
AT5G06520.1 | Thale cress | cytosol | 13.03 | 15.46 |
AT1G18050.1 | Thale cress | nucleus | 2.73 | 9.82 |
Protein Annotations
Gene3D:1.10.10.790 | MapMan:16.4.1.2.3.1 | Gene3D:3.10.20.90 | ProteinID:AQK89403.1 | ProteinID:AQK89404.1 | ProteinID:AQK89405.1 |
ProteinID:AQK89406.1 | ProteinID:AQK89407.1 | ProteinID:AQK89408.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 |
GO:GO:0008152 | GO:GO:0009987 | InterPro:IPR000061 | InterPro:IPR000626 | InterPro:IPR035967 | UniProt:K7USZ5 |
PFAM:PF00240 | PFAM:PF01805 | PFAM:PF12230 | PFscan:PS50053 | PFscan:PS50128 | PANTHER:PTHR15316 |
PANTHER:PTHR15316:SF1 | InterPro:SF3A1 | SMART:SM00213 | SMART:SM00648 | SUPFAM:SSF109905 | SUPFAM:SSF54236 |
InterPro:SWAP/Surp_sf | InterPro:Surp | UniParc:UPI000220A8A8 | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_dom | EnsemblPlantsGene:Zm00001d008293 |
EnsemblPlants:Zm00001d008293_P001 | EnsemblPlants:Zm00001d008293_T001 | SEG:seg | : | : | : |
Description
Probable splicing factor 3A subunit 1
Coordinates
chr8:-:4309481..4314254
Molecular Weight (calculated)
88149.2 Da
IEP (calculated)
4.867
GRAVY (calculated)
-0.574
Length
806 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAMGNPIL TLPAPEGNGT GGGDADQQLQ QAPPKPPPPG AKTDPPATVA THTRTIGIIH PPPDIRVIIE KTATFVAKNG PEFERRIISL NQGNAKFNFL
101: QPSDPYHAYY QHRVSEIAAA PPGADGPSGA DTGAAPDESP ASAPADGAAA APVDGAAADA KADHSAPFRV GPPPKVLVPP KAELYTVRLP EGITGEELDI
201: IKLTAQFVAR NGKNFLTSLA QRESNNMQFH FIRPTHSMFP FFTALTDAYS RVLRPAEGVP ALLKELREGS KDLTTVLERC LNRLEWDRSQ EQARQQAEDE
301: VEQERMQMSM IDWHDFVVVE TIEFADDEYE GLPVPLTLEE LKRQKRMENL GEEEAMDLTE PSKEVEMEMD EEEMQLVEEG MRAARLEEND GAAQVSLPGD
401: DEAPMRIVKN YKRPEERIPA ERDPTKFVVS PITGELIPIS EMEEHMRISL IDPKYKEQKE RMLAKIKETT LAPDDEISRN IVGLARTRPD IFGTTEEEVS
501: NAVKAEIEKK KDEQPKQVIW DGHSGSIGRT ATHALSQPQG GEEQFDATNV DGRPVPGPAP LVRPGMPLPR PPQPLPLVNV PRFIAPPAPY SVPPPGSHMP
601: GVPHMMPHMH LPPQQIPGQP PMVRMPGQMV HMPTSIPPPP GQTQFMPGPP RTFAMPPSSH MPPMINPIGI PQPPAPPLPP QPPAEEQPPP PDEPEPKRQR
701: TDDASLIPAE QYLVQHPGPA SISVSVPNLD EGNLRGQILQ IPVQSLSDTV GSLKEQIAGE LQLPANKQKL SVRTSFLKDN LTLAYYNVGP GVVINLTLRE
801: RGGRKK
101: QPSDPYHAYY QHRVSEIAAA PPGADGPSGA DTGAAPDESP ASAPADGAAA APVDGAAADA KADHSAPFRV GPPPKVLVPP KAELYTVRLP EGITGEELDI
201: IKLTAQFVAR NGKNFLTSLA QRESNNMQFH FIRPTHSMFP FFTALTDAYS RVLRPAEGVP ALLKELREGS KDLTTVLERC LNRLEWDRSQ EQARQQAEDE
301: VEQERMQMSM IDWHDFVVVE TIEFADDEYE GLPVPLTLEE LKRQKRMENL GEEEAMDLTE PSKEVEMEMD EEEMQLVEEG MRAARLEEND GAAQVSLPGD
401: DEAPMRIVKN YKRPEERIPA ERDPTKFVVS PITGELIPIS EMEEHMRISL IDPKYKEQKE RMLAKIKETT LAPDDEISRN IVGLARTRPD IFGTTEEEVS
501: NAVKAEIEKK KDEQPKQVIW DGHSGSIGRT ATHALSQPQG GEEQFDATNV DGRPVPGPAP LVRPGMPLPR PPQPLPLVNV PRFIAPPAPY SVPPPGSHMP
601: GVPHMMPHMH LPPQQIPGQP PMVRMPGQMV HMPTSIPPPP GQTQFMPGPP RTFAMPPSSH MPPMINPIGI PQPPAPPLPP QPPAEEQPPP PDEPEPKRQR
701: TDDASLIPAE QYLVQHPGPA SISVSVPNLD EGNLRGQILQ IPVQSLSDTV GSLKEQIAGE LQLPANKQKL SVRTSFLKDN LTLAYYNVGP GVVINLTLRE
801: RGGRKK
001: MFNSMKILPL EAPPADGNLG PLPPSQLTDE EIKENEFQGE QNNSIQTPIA VATHTNPIGI IYPPPEIRKI VETTAQFVSQ NGLAFGNKVK TEKANNANFS
101: FLKSDNPYHG FYRYKVTEYS CHIRDGAQGT DVDDTEDPKL DDESDAKPDL QAQFRAPRKI LEAPEPEKYT VRLPEGIMEA ELDIIKHTAQ FVARNGQSFL
201: RELMRREVNN SQFQFMKPTH SMFTFFTSLV DAYSEVLMPP RDLKEKLRKS VADLTTVLER CLNRLEWDRF QEEEKNKEED EKEKERVQMV MIDWKDFAVV
301: ESIDFADEED KDLPMPMTLE EVIRRSKVSA MEEDEIVEPG KEVEMDMDEE EVKLVAEGMR AANLEEYVGS VEIEEEAPMR IVKNWKRPED RFLTERDSSK
401: VVISRITGEL IPITEMSEHM RISLIDPKFK EQKDRMFAKI RETTLAQDDE IAKNIVGLAR LRPDIFGTTE EEVSNAVKAD IEKKDEQPKQ VIWDGHTGSI
501: GRTANQALTQ NSNGEQGDGV YGDPNSFPGP AAFPPPRPGV PTVRPLPPPQ NLALNLPRPP PSVQYPGAPR PLGVPMMQPM YQQHQLSMSG PHGHPSMMMS
601: RPPQMQPVMR VPPPPGSQFS HMQVPQPYGQ LPPLSMGMMQ PPPMAEMPPP PPPGEAPPPL PEEPEPKRQK LDESALVPED QFLAQHPGPA TIRVSKPNEN
701: DGQVMEITVQ SLSENVGSLK EKIAGEMQIP ANKQK
101: FLKSDNPYHG FYRYKVTEYS CHIRDGAQGT DVDDTEDPKL DDESDAKPDL QAQFRAPRKI LEAPEPEKYT VRLPEGIMEA ELDIIKHTAQ FVARNGQSFL
201: RELMRREVNN SQFQFMKPTH SMFTFFTSLV DAYSEVLMPP RDLKEKLRKS VADLTTVLER CLNRLEWDRF QEEEKNKEED EKEKERVQMV MIDWKDFAVV
301: ESIDFADEED KDLPMPMTLE EVIRRSKVSA MEEDEIVEPG KEVEMDMDEE EVKLVAEGMR AANLEEYVGS VEIEEEAPMR IVKNWKRPED RFLTERDSSK
401: VVISRITGEL IPITEMSEHM RISLIDPKFK EQKDRMFAKI RETTLAQDDE IAKNIVGLAR LRPDIFGTTE EEVSNAVKAD IEKKDEQPKQ VIWDGHTGSI
501: GRTANQALTQ NSNGEQGDGV YGDPNSFPGP AAFPPPRPGV PTVRPLPPPQ NLALNLPRPP PSVQYPGAPR PLGVPMMQPM YQQHQLSMSG PHGHPSMMMS
601: RPPQMQPVMR VPPPPGSQFS HMQVPQPYGQ LPPLSMGMMQ PPPMAEMPPP PPPGEAPPPL PEEPEPKRQK LDESALVPED QFLAQHPGPA TIRVSKPNEN
701: DGQVMEITVQ SLSENVGSLK EKIAGEMQIP ANKQK
Arabidopsis Description
SWAP (Suppressor-of-White-APricot)/surp domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4HW92]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.